Wall clock time and date at job start Fri Apr 10 2020 17:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99509 * 2 1 4 4 H 1.48501 * 109.46833 * 239.99470 * 3 2 1 5 5 H 1.48499 * 109.47262 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47148 * 119.99746 * 3 2 1 7 7 C 1.37873 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47114 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47404 * 180.02562 * 10 9 7 12 12 N 1.46893 * 109.47249 * 180.02562 * 11 10 9 13 13 C 1.47014 * 111.00236 * 66.36284 * 12 11 10 14 14 C 1.53102 * 109.25698 * 182.39478 * 13 12 11 15 15 O 1.43010 * 109.25737 * 303.14966 * 14 13 12 16 16 C 1.43020 * 113.74005 * 58.67257 * 15 14 13 17 17 C 1.53002 * 109.50912 * 181.39447 * 16 15 14 18 18 C 1.52993 * 117.49739 * 133.52951 * 17 16 15 19 19 C 1.53002 * 117.49770 * 64.86872 * 17 16 15 20 20 C 1.52998 * 109.50454 * 61.26538 * 16 15 14 21 21 C 1.53001 * 117.50202 * 134.43865 * 20 16 15 22 22 C 1.53000 * 117.50282 * 65.77419 * 20 16 15 23 23 C 1.47011 * 111.00132 * 189.99909 * 12 11 10 24 24 H 0.97000 * 120.00762 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47079 * 60.00199 * 9 7 2 26 26 H 1.09001 * 109.47577 * 299.99463 * 9 7 2 27 27 H 1.08999 * 109.46913 * 60.00185 * 10 9 7 28 28 H 1.09005 * 109.46972 * 300.00330 * 10 9 7 29 29 H 1.09003 * 109.47004 * 59.99604 * 11 10 9 30 30 H 1.09004 * 109.46644 * 299.99937 * 11 10 9 31 31 H 1.09000 * 109.50716 * 302.32675 * 13 12 11 32 32 H 1.09000 * 109.50556 * 62.45906 * 13 12 11 33 33 H 1.09004 * 109.50775 * 63.08811 * 14 13 12 34 34 H 1.09000 * 109.50060 * 183.17263 * 14 13 12 35 35 H 1.09001 * 115.54483 * 279.20322 * 17 16 15 36 36 H 1.09004 * 117.50192 * 359.97438 * 18 17 16 37 37 H 1.09006 * 117.49554 * 145.02536 * 18 17 16 38 38 H 1.08996 * 117.49595 * 214.97813 * 19 17 16 39 39 H 1.08998 * 117.50039 * 359.97438 * 19 17 16 40 40 H 1.09008 * 115.54710 * 280.10800 * 20 16 15 41 41 H 1.08998 * 117.49203 * 359.97438 * 21 20 16 42 42 H 1.08997 * 117.50105 * 145.01426 * 21 20 16 43 43 H 1.08997 * 117.49983 * 214.98047 * 22 20 16 44 44 H 1.09004 * 117.49384 * 359.97438 * 22 20 16 45 45 H 1.08999 * 109.50552 * 297.54472 * 23 12 11 46 46 H 1.09005 * 109.50689 * 57.67327 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 -0.0001 12 7 2.4351 -6.1036 0.0005 13 6 3.1949 -6.1465 1.2584 14 6 4.2166 -7.2848 1.1925 15 8 3.5362 -8.5147 0.9287 16 6 2.7866 -8.5082 -0.2892 17 6 2.0736 -9.8515 -0.4575 18 6 0.5981 -9.8224 -0.8607 19 6 0.9946 -10.2116 0.5656 20 6 3.7323 -8.2794 -1.4699 21 6 3.5600 -9.1764 -2.6974 22 6 4.7633 -9.3690 -1.7709 23 6 1.7504 -7.3824 -0.2384 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6042 0.8905 28 1 2.8721 -3.6042 -0.8895 29 1 0.8541 -5.0446 -0.8903 30 1 0.8536 -5.0451 0.8897 31 1 3.7143 -5.1991 1.4024 32 1 2.5119 -6.3181 2.0904 33 1 4.9320 -7.0861 0.3944 34 1 4.7435 -7.3563 2.1441 35 1 2.6867 -10.6632 -0.8494 36 1 0.1350 -8.8463 -1.0057 37 1 0.2401 -10.6153 -1.5175 38 1 0.8974 -11.2603 0.8465 39 1 0.7929 -9.4918 1.3589 40 1 4.0294 -7.2445 -1.6405 41 1 2.7732 -9.9299 -2.6634 42 1 3.7440 -8.7319 -3.6754 43 1 5.7384 -9.0511 -2.1399 44 1 4.7681 -10.2488 -1.1274 45 1 1.0443 -7.5736 0.5697 46 1 1.2154 -7.3371 -1.1870 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595821776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:24 Heat of formation + Delta-G solvation = -10.362205 kcal Electronic energy + Delta-G solvation = -22768.723278 eV Core-core repulsion = 19659.177213 eV Total energy + Delta-G solvation = -3109.546065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.65763 -38.55066 -37.22564 -36.79085 -35.48139 -33.25372 -31.57898 -29.45623 -27.26123 -25.76610 -24.48693 -23.50655 -23.08766 -22.89695 -22.63574 -21.44777 -19.26578 -18.52620 -17.59468 -17.30789 -17.15417 -16.54496 -16.37620 -16.06660 -15.49156 -15.13665 -15.00156 -14.90794 -14.44801 -14.24590 -14.01872 -13.63540 -13.16943 -13.01364 -12.69999 -12.66961 -12.47482 -12.41466 -12.38867 -12.24437 -11.97138 -11.64787 -11.41599 -11.40508 -11.28971 -11.22635 -11.16277 -11.02087 -10.82705 -10.55909 -10.43008 -9.35802 -8.20933 -6.32268 1.39389 1.42599 1.50550 2.39454 2.41907 2.79744 2.99931 3.12163 3.22889 3.61764 3.64810 3.82326 3.99691 4.01526 4.07109 4.13093 4.16204 4.23987 4.24987 4.32404 4.48895 4.50860 4.59480 4.63575 4.66512 4.78370 4.78568 4.81370 4.84802 4.94181 4.98569 5.00738 5.08993 5.12025 5.22262 5.24845 5.25148 5.32736 5.41272 5.49776 5.71025 5.83778 5.95781 6.02035 6.25041 6.26684 6.84120 7.37061 8.90869 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026761 B = 0.003477 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.063678 B = 8052.028974 C = 8286.936473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.086 4.086 11 C 0.068 3.932 12 N -0.534 5.534 13 C 0.013 3.987 14 C 0.069 3.931 15 O -0.381 6.381 16 C 0.186 3.814 17 C -0.147 4.147 18 C -0.167 4.167 19 C -0.172 4.172 20 C -0.181 4.181 21 C -0.164 4.164 22 C -0.165 4.165 23 C 0.034 3.966 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.011 1.011 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.021 0.979 31 H 0.086 0.914 32 H 0.031 0.969 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.033 0.967 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 -22.993 -1.697 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.124 4.124 11 C -0.059 4.059 12 N -0.259 5.259 13 C -0.115 4.115 14 C -0.007 4.007 15 O -0.300 6.300 16 C 0.147 3.853 17 C -0.166 4.166 18 C -0.204 4.204 19 C -0.209 4.209 20 C -0.199 4.199 21 C -0.201 4.201 22 C -0.202 4.202 23 C -0.094 4.094 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.007 0.993 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.110 0.890 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.128 0.872 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.051 0.949 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.787 -22.969 -1.955 24.030 hybrid contribution -0.592 1.504 0.664 1.747 sum 6.196 -21.465 -1.291 22.379 Atomic orbital electron populations 1.70089 1.07824 1.27866 1.51629 1.25984 0.95767 1.03373 0.94652 0.85502 0.78292 0.78044 0.79228 1.19135 1.20761 1.19139 1.21647 0.93516 0.92344 1.50662 0.92241 1.18960 0.94381 0.93107 0.94670 1.21367 0.97939 0.92435 1.00683 1.22038 0.93499 0.90482 0.99912 1.62217 1.26578 1.02865 1.34203 1.22887 0.97332 1.01030 0.90222 1.22663 0.93250 0.82365 1.02449 1.87981 1.66021 1.35358 1.40678 1.20337 0.89036 0.92441 0.83475 1.22132 0.91563 0.96874 1.06000 1.23205 0.95016 1.03859 0.98331 1.22936 1.02638 1.02643 0.92699 1.22600 1.02633 0.97055 0.97621 1.23093 1.00736 1.02261 0.94025 1.22893 0.94239 1.00078 1.02965 1.22847 0.95946 0.89264 1.01298 0.92743 0.98982 0.99303 0.93116 0.92849 0.91254 0.96027 0.89550 0.95073 0.92038 0.86817 0.85974 0.88952 0.86353 0.87216 0.90246 0.88391 0.87238 0.88574 0.88527 0.88457 0.94897 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 44.68 29.54 68.60 2.03 46.70 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.54 -31.54 9.11 25.60 0.23 -31.30 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.43 4.97 29.85 0.15 1.57 16 10 C -0.09 -3.67 5.09 30.60 0.16 -3.51 16 11 C 0.07 2.45 4.96 86.31 0.43 2.88 16 12 N -0.53 -16.21 4.08 -895.21 -3.65 -19.86 16 13 C 0.01 0.38 5.44 86.32 0.47 0.85 16 14 C 0.07 1.65 6.71 72.02 0.48 2.13 16 15 O -0.38 -9.64 10.24 -148.98 -1.53 -11.17 16 16 C 0.19 4.25 0.76 -10.76 -0.01 4.24 16 17 C -0.15 -2.71 3.71 -10.79 -0.04 -2.75 16 18 C -0.17 -2.69 9.63 30.62 0.29 -2.40 16 19 C -0.17 -3.06 9.83 30.62 0.30 -2.76 16 20 C -0.18 -3.95 3.95 -10.79 -0.04 -3.99 16 21 C -0.16 -2.84 9.64 30.62 0.30 -2.55 16 22 C -0.16 -2.94 9.80 30.62 0.30 -2.64 16 23 C 0.03 0.90 2.97 86.31 0.26 1.16 16 24 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 26 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 27 H 0.05 2.10 6.52 -2.39 -0.02 2.08 16 28 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.07 2.49 8.04 -2.39 -0.02 2.47 16 30 H 0.02 0.80 8.12 -2.39 -0.02 0.78 16 31 H 0.09 2.51 6.38 -2.39 -0.02 2.50 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.46 7.05 -2.39 -0.02 1.44 16 34 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.12 1.98 6.19 -2.39 -0.01 1.97 16 36 H 0.09 1.67 5.94 -2.39 -0.01 1.66 16 37 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.68 7.27 -2.39 -0.02 1.66 16 40 H 0.10 2.58 7.42 -2.38 -0.02 2.57 16 41 H 0.11 1.64 6.22 -2.39 -0.01 1.63 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 44 H 0.10 1.66 7.47 -2.39 -0.02 1.65 16 45 H 0.03 0.91 6.76 -2.39 -0.02 0.89 16 46 H 0.09 2.24 6.92 -2.38 -0.02 2.23 16 Total: -1.00 -64.73 350.10 1.81 -62.92 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.94 Total: 17.28 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: 3.74 Total: -38.60 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -3.37 Total: -77.13 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.53 Total: -11.17 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -64.73 1.81 -62.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595821776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.555 kcal (2) G-P(sol) polarization free energy of solvation -64.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds