Wall clock time and date at job start Fri Apr 10 2020 17:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53302 * 1 3 3 C 1.51575 * 110.57356 * 2 1 4 4 C 1.52524 * 114.13403 * 99.88511 * 3 2 1 5 5 H 1.09795 * 111.79079 * 173.67125 * 4 3 2 6 6 C 1.54453 * 109.59710 * 297.43409 * 4 3 2 7 7 C 1.54351 * 104.40442 * 89.40246 * 6 4 3 8 8 C 1.54412 * 104.50968 * 0.90562 * 7 6 4 9 9 H 1.09738 * 111.30773 * 145.26831 * 8 7 6 10 10 C 1.51575 * 110.62165 * 129.95734 * 2 1 3 11 11 N 1.48101 * 104.70920 * 24.94428 * 8 7 6 12 12 C 1.34683 * 128.61796 * 137.85968 * 11 8 7 13 13 O 1.21282 * 120.00129 * 180.16652 * 12 11 8 14 14 C 1.50698 * 119.99846 * 0.17633 * 12 11 8 15 15 C 1.53006 * 109.47184 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47127 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47131 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47188 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00218 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99966 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99729 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00167 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47149 * 90.00120 * 22 20 18 24 24 H 1.48501 * 109.47501 * 210.00465 * 22 20 18 25 25 H 1.48501 * 109.46930 * 330.00484 * 22 20 18 26 26 H 1.08991 * 109.46939 * 290.04403 * 1 2 3 27 27 H 1.09003 * 109.46844 * 50.04205 * 1 2 3 28 28 H 1.08996 * 109.46973 * 170.03642 * 1 2 3 29 29 H 1.11659 * 105.61209 * 244.98780 * 2 1 3 30 30 H 1.10106 * 109.16936 * 337.77887 * 3 2 1 31 31 H 1.10109 * 109.06734 * 221.88601 * 3 2 1 32 32 H 1.09211 * 110.22943 * 207.61039 * 6 4 3 33 33 H 1.08701 * 111.01332 * 329.81962 * 6 4 3 34 34 H 1.09298 * 109.96753 * 119.07991 * 7 6 4 35 35 H 1.08650 * 111.05583 * 240.96923 * 7 6 4 36 36 H 1.10053 * 109.14560 * 138.51442 * 10 2 1 37 37 H 1.10082 * 109.19286 * 22.43046 * 10 2 1 38 38 H 1.09001 * 109.47612 * 59.99850 * 14 12 11 39 39 H 1.09001 * 109.47122 * 299.99681 * 14 12 11 40 40 H 1.09001 * 109.47002 * 299.99404 * 15 14 12 41 41 H 1.08993 * 109.46955 * 59.99842 * 15 14 12 42 42 H 1.09001 * 109.47289 * 299.99953 * 16 15 14 43 43 H 1.09004 * 109.47261 * 59.99697 * 16 15 14 44 44 H 1.09001 * 109.46997 * 299.99574 * 17 16 15 45 45 H 1.08992 * 109.47534 * 59.99520 * 17 16 15 46 46 H 0.96996 * 119.99717 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5330 0.0000 0.0000 3 6 2.0657 1.4191 0.0000 4 6 2.5085 1.9190 1.3713 5 1 2.9889 2.9044 1.3102 6 6 1.2969 1.9465 2.3287 7 6 1.2835 0.5433 2.9715 8 6 2.5013 -0.1771 2.3533 9 1 2.9727 -0.8552 3.0759 10 6 2.0669 -0.9111 1.0874 11 7 3.4230 0.9131 1.9593 12 6 4.7607 0.9759 2.1030 13 8 5.3660 1.9559 1.7234 14 6 5.5053 -0.1716 2.7352 15 6 7.0003 0.1516 2.7769 16 6 7.7562 -1.0132 3.4193 17 6 9.2510 -0.6897 3.4616 18 6 9.9956 -1.8372 4.0938 19 1 9.4566 -2.7098 4.4321 20 6 11.3650 -1.7727 4.2413 21 7 12.0148 -2.7740 4.7936 22 14 12.2973 -0.2632 3.6570 23 1 12.3809 0.7255 4.7619 24 1 13.6672 -0.6577 3.2409 25 1 11.5849 0.3427 2.5034 26 1 -0.3633 0.3522 0.9654 27 1 -0.3633 0.6600 -0.7878 28 1 -0.3633 -1.0121 -0.1778 29 1 1.8335 -0.4547 -0.9745 30 1 1.2914 2.0959 -0.3933 31 1 2.9174 1.4836 -0.6948 32 1 1.4398 2.7097 3.0968 33 1 0.3745 2.1333 1.7848 34 1 1.4062 0.6276 4.0543 35 1 0.3600 0.0183 2.7435 36 1 2.9229 -1.4798 0.6938 37 1 1.2949 -1.6500 1.3517 38 1 5.3458 -1.0759 2.1480 39 1 5.1386 -0.3278 3.7497 40 1 7.3667 0.3074 1.7622 41 1 7.1602 1.0559 3.3639 42 1 7.3897 -1.1686 4.4340 43 1 7.5962 -1.9178 2.8327 44 1 9.6178 -0.5340 2.4470 45 1 9.4106 0.2148 4.0484 46 1 12.9781 -2.7288 4.8970 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598445003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:07 Heat of formation + Delta-G solvation = -66.563249 kcal Electronic energy + Delta-G solvation = -22250.708545 eV Core-core repulsion = 19138.725421 eV Total energy + Delta-G solvation = -3111.983125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12729 -38.53059 -35.00423 -34.44004 -32.65721 -31.95585 -31.59434 -29.94897 -27.96449 -25.93329 -24.75615 -23.40970 -21.97937 -20.93991 -20.31353 -19.96533 -17.95630 -17.35490 -16.57803 -16.08167 -15.65281 -15.36363 -14.60475 -14.16809 -14.03345 -13.84523 -13.79200 -13.77990 -13.51523 -12.94250 -12.84236 -12.60292 -12.25323 -12.13425 -12.02850 -11.92003 -11.73850 -11.39206 -11.08515 -10.87370 -10.82842 -10.69491 -10.61783 -10.50388 -10.50066 -9.90640 -9.77068 -9.61922 -9.37783 -9.09499 -8.76944 -8.47334 -5.98736 -3.95989 2.70960 2.84261 3.37066 3.43903 3.50448 4.11663 4.18177 4.37237 4.52070 4.57757 4.59495 4.70215 4.76799 4.84921 4.95083 5.01435 5.17302 5.28235 5.29053 5.30922 5.34442 5.36913 5.41754 5.45142 5.55883 5.66350 5.73856 5.76047 5.78805 5.84251 5.92185 5.94729 5.98268 6.06794 6.14753 6.25164 6.45587 6.71675 6.85369 7.02185 7.40880 7.53759 7.55879 7.86965 8.23899 8.60475 9.06374 9.64808 11.14828 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035464 B = 0.003012 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.335223 B = 9293.056167 C = 9527.135991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.119 4.119 4 C 0.135 3.865 5 H 0.095 0.905 6 C -0.129 4.129 7 C -0.130 4.130 8 C 0.132 3.868 9 H 0.098 0.902 10 C -0.121 4.121 11 N -0.621 5.621 12 C 0.536 3.464 13 O -0.539 6.539 14 C -0.133 4.133 15 C -0.106 4.106 16 C -0.102 4.102 17 C -0.015 4.015 18 C -0.519 4.519 19 H 0.071 0.929 20 C 0.064 3.936 21 N -0.907 5.907 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.264 1.264 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.015 0.985 45 H 0.011 0.989 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.631 6.622 -7.891 30.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 C -0.157 4.157 4 C 0.031 3.969 5 H 0.113 0.887 6 C -0.167 4.167 7 C -0.168 4.168 8 C 0.028 3.972 9 H 0.116 0.884 10 C -0.160 4.160 11 N -0.356 5.356 12 C 0.327 3.673 13 O -0.415 6.415 14 C -0.173 4.173 15 C -0.144 4.144 16 C -0.139 4.139 17 C -0.053 4.053 18 C -0.557 4.557 19 H 0.089 0.911 20 C -0.136 4.136 21 N -0.546 5.546 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.189 1.189 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.034 0.966 45 H 0.029 0.971 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.960 7.087 -8.056 29.948 hybrid contribution 0.547 0.603 -0.295 0.866 sum -27.413 7.691 -8.351 29.670 Atomic orbital electron populations 1.22165 0.94984 1.01605 1.01955 1.20640 0.95502 0.94953 0.98726 1.21708 1.01272 0.96009 0.96697 1.21900 0.89285 0.93364 0.92338 0.88708 1.22543 0.98019 0.97392 0.98775 1.22564 0.97968 0.95975 1.00325 1.22034 0.89702 0.89687 0.95816 0.88416 1.21744 1.01565 0.97650 0.95003 1.49177 1.05295 1.19887 1.61226 1.20675 0.79590 0.88958 0.78082 1.90699 1.66425 1.34189 1.50218 1.21744 0.97512 0.96426 1.01611 1.21491 0.90879 0.99926 1.02101 1.21470 0.97134 0.96005 0.99335 1.19574 0.91953 0.97057 0.96693 1.21191 0.92193 1.03176 1.39111 0.91113 1.25044 0.97764 0.96097 0.94722 1.69925 1.08345 1.31507 1.44823 0.86772 0.79011 0.83612 0.79903 1.20313 1.21468 1.18886 0.92227 0.92771 0.92736 0.92265 0.91085 0.92034 0.91298 0.90231 0.91157 0.90033 0.91777 0.90784 0.89203 0.89178 0.91825 0.91815 0.92892 0.92874 0.96627 0.97054 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 8.62 37.31 0.32 -0.47 16 2 C -0.08 -0.56 2.38 -91.91 -0.22 -0.78 16 3 C -0.12 -0.97 4.94 -27.70 -0.14 -1.11 16 4 C 0.13 1.29 3.87 -66.52 -0.26 1.03 16 5 H 0.09 1.06 7.97 -51.48 -0.41 0.65 16 6 C -0.13 -0.90 5.93 -25.26 -0.15 -1.05 16 7 C -0.13 -0.84 5.90 -25.28 -0.15 -0.98 16 8 C 0.13 1.06 3.76 -66.50 -0.25 0.81 16 9 H 0.10 0.73 7.45 -51.51 -0.38 0.35 16 10 C -0.12 -0.87 4.94 -27.64 -0.14 -1.01 16 11 N -0.62 -6.96 2.77 -154.37 -0.43 -7.39 16 12 C 0.54 7.89 7.93 -11.03 -0.09 7.80 16 13 O -0.54 -10.11 16.30 5.56 0.09 -10.02 16 14 C -0.13 -1.82 4.71 -27.88 -0.13 -1.95 16 15 C -0.11 -1.86 4.50 -26.73 -0.12 -1.98 16 16 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 17 C -0.02 -0.39 4.04 -27.89 -0.11 -0.50 16 18 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 19 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 20 C 0.06 1.94 5.47 -17.81 -0.10 1.84 16 21 N -0.91 -28.66 13.96 55.43 0.77 -27.88 16 22 Si 0.88 22.63 27.47 -169.99 -4.67 17.96 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 25 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 26 H 0.06 0.29 5.00 -51.93 -0.26 0.03 16 27 H 0.05 0.27 7.91 -51.93 -0.41 -0.14 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.45 8.30 -50.39 -0.42 0.03 16 30 H 0.07 0.47 7.67 -51.30 -0.39 0.08 16 31 H 0.06 0.61 8.23 -51.30 -0.42 0.19 16 32 H 0.07 0.50 8.16 -51.81 -0.42 0.08 16 33 H 0.08 0.44 6.92 -52.10 -0.36 0.08 16 34 H 0.07 0.45 8.17 -51.76 -0.42 0.03 16 35 H 0.08 0.40 6.49 -52.13 -0.34 0.06 16 36 H 0.06 0.52 8.23 -51.33 -0.42 0.10 16 37 H 0.07 0.41 7.83 -51.31 -0.40 0.01 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.08 8.03 -51.93 -0.42 0.66 16 40 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 41 H 0.06 1.18 8.10 -51.93 -0.42 0.75 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 45 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 46 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -34.06 349.24 -9.33 -43.40 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -8.37 Total: -5.18 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -2.00 Total: -16.15 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.35 Total: -35.27 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.06 -9.33 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598445003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.166 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds