Wall clock time and date at job start Fri Apr 10 2020 17:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53302 * 1 3 3 C 1.51575 * 110.57356 * 2 1 4 4 C 1.52524 * 114.13403 * 99.88511 * 3 2 1 5 5 H 1.09795 * 111.79079 * 173.67125 * 4 3 2 6 6 C 1.54453 * 109.59710 * 297.43409 * 4 3 2 7 7 C 1.54351 * 104.40442 * 89.40246 * 6 4 3 8 8 C 1.54412 * 104.50968 * 0.90562 * 7 6 4 9 9 H 1.09738 * 111.30773 * 145.26831 * 8 7 6 10 10 C 1.51575 * 110.62165 * 129.95734 * 2 1 3 11 11 N 1.48101 * 104.70920 * 24.94428 * 8 7 6 12 12 C 1.34683 * 128.61796 * 137.85968 * 11 8 7 13 13 O 1.21282 * 120.00129 * 180.16652 * 12 11 8 14 14 C 1.50698 * 119.99846 * 0.17633 * 12 11 8 15 15 C 1.53006 * 109.47184 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47127 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47131 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47188 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00218 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99966 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99729 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00167 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47149 * 90.00120 * 22 20 18 24 24 H 1.48501 * 109.47501 * 210.00465 * 22 20 18 25 25 H 1.48501 * 109.46930 * 330.00484 * 22 20 18 26 26 H 1.08991 * 109.46939 * 290.04403 * 1 2 3 27 27 H 1.09003 * 109.46844 * 50.04205 * 1 2 3 28 28 H 1.08996 * 109.46973 * 170.03642 * 1 2 3 29 29 H 1.11659 * 105.61209 * 244.98780 * 2 1 3 30 30 H 1.10106 * 109.16936 * 337.77887 * 3 2 1 31 31 H 1.10109 * 109.06734 * 221.88601 * 3 2 1 32 32 H 1.09211 * 110.22943 * 207.61039 * 6 4 3 33 33 H 1.08701 * 111.01332 * 329.81962 * 6 4 3 34 34 H 1.09298 * 109.96753 * 119.07991 * 7 6 4 35 35 H 1.08650 * 111.05583 * 240.96923 * 7 6 4 36 36 H 1.10053 * 109.14560 * 138.51442 * 10 2 1 37 37 H 1.10082 * 109.19286 * 22.43046 * 10 2 1 38 38 H 1.09001 * 109.47612 * 59.99850 * 14 12 11 39 39 H 1.09001 * 109.47122 * 299.99681 * 14 12 11 40 40 H 1.09001 * 109.47002 * 299.99404 * 15 14 12 41 41 H 1.08993 * 109.46955 * 59.99842 * 15 14 12 42 42 H 1.09001 * 109.47289 * 299.99953 * 16 15 14 43 43 H 1.09004 * 109.47261 * 59.99697 * 16 15 14 44 44 H 1.09001 * 109.46997 * 299.99574 * 17 16 15 45 45 H 1.08992 * 109.47534 * 59.99520 * 17 16 15 46 46 H 0.96996 * 119.99717 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5330 0.0000 0.0000 3 6 2.0657 1.4191 0.0000 4 6 2.5085 1.9190 1.3713 5 1 2.9889 2.9044 1.3102 6 6 1.2969 1.9465 2.3287 7 6 1.2835 0.5433 2.9715 8 6 2.5013 -0.1771 2.3533 9 1 2.9727 -0.8552 3.0759 10 6 2.0669 -0.9111 1.0874 11 7 3.4230 0.9131 1.9593 12 6 4.7607 0.9759 2.1030 13 8 5.3660 1.9559 1.7234 14 6 5.5053 -0.1716 2.7352 15 6 7.0003 0.1516 2.7769 16 6 7.7562 -1.0132 3.4193 17 6 9.2510 -0.6897 3.4616 18 6 9.9956 -1.8372 4.0938 19 1 9.4566 -2.7098 4.4321 20 6 11.3650 -1.7727 4.2413 21 7 12.0148 -2.7740 4.7936 22 14 12.2973 -0.2632 3.6570 23 1 12.3809 0.7255 4.7619 24 1 13.6672 -0.6577 3.2409 25 1 11.5849 0.3427 2.5034 26 1 -0.3633 0.3522 0.9654 27 1 -0.3633 0.6600 -0.7878 28 1 -0.3633 -1.0121 -0.1778 29 1 1.8335 -0.4547 -0.9745 30 1 1.2914 2.0959 -0.3933 31 1 2.9174 1.4836 -0.6948 32 1 1.4398 2.7097 3.0968 33 1 0.3745 2.1333 1.7848 34 1 1.4062 0.6276 4.0543 35 1 0.3600 0.0183 2.7435 36 1 2.9229 -1.4798 0.6938 37 1 1.2949 -1.6500 1.3517 38 1 5.3458 -1.0759 2.1480 39 1 5.1386 -0.3278 3.7497 40 1 7.3667 0.3074 1.7622 41 1 7.1602 1.0559 3.3639 42 1 7.3897 -1.1686 4.4340 43 1 7.5962 -1.9178 2.8327 44 1 9.6178 -0.5340 2.4470 45 1 9.4106 0.2148 4.0484 46 1 12.9781 -2.7288 4.8970 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598445003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:07 Heat of formation + Delta-G solvation = -86.245205 kcal Electronic energy + Delta-G solvation = -22251.562019 eV Core-core repulsion = 19138.725421 eV Total energy + Delta-G solvation = -3112.836598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.89886 -39.60295 -36.68658 -35.10419 -34.62720 -32.92139 -32.31967 -31.54984 -28.62458 -27.53632 -25.36617 -24.52613 -23.24885 -21.82453 -21.63744 -21.09766 -18.89017 -18.80397 -18.15952 -16.86551 -16.79049 -16.49668 -16.19038 -15.68654 -14.87175 -14.82968 -14.59937 -14.53966 -14.34664 -14.22345 -13.91371 -13.75663 -13.65385 -13.39756 -13.28467 -12.86730 -12.54818 -12.51970 -12.35456 -12.12117 -12.02727 -11.76839 -11.55934 -11.45233 -11.38969 -11.34308 -11.28052 -11.23588 -11.06963 -10.77728 -10.76808 -9.65533 -8.30766 -6.33734 1.33758 1.35199 1.48270 1.61107 1.94609 2.35033 3.04577 3.40283 3.56583 3.76818 3.82358 3.97269 4.01098 4.05345 4.10584 4.18943 4.28006 4.29592 4.41187 4.48321 4.60014 4.62238 4.70652 4.80479 4.83011 4.84545 4.86255 4.96910 5.04851 5.08562 5.10536 5.10949 5.16634 5.23794 5.25058 5.27158 5.38123 5.40979 5.50631 5.54196 5.57255 5.63153 5.67096 6.28438 6.61505 6.73954 7.16142 7.31074 8.85882 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035464 B = 0.003012 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.335223 B = 9293.056167 C = 9527.135991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.114 4.114 4 C 0.125 3.875 5 H 0.068 0.932 6 C -0.122 4.122 7 C -0.124 4.124 8 C 0.123 3.877 9 H 0.107 0.893 10 C -0.121 4.121 11 N -0.619 5.619 12 C 0.530 3.470 13 O -0.593 6.593 14 C -0.124 4.124 15 C -0.096 4.096 16 C -0.092 4.092 17 C -0.016 4.016 18 C -0.530 4.530 19 H 0.038 0.962 20 C 0.005 3.995 21 N -0.950 5.950 22 Si 0.947 3.053 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.254 1.254 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.033 0.967 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.050 0.950 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.013 0.987 45 H 0.013 0.987 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.260 6.973 -8.100 33.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 C -0.152 4.152 4 C 0.021 3.979 5 H 0.086 0.914 6 C -0.160 4.160 7 C -0.162 4.162 8 C 0.020 3.980 9 H 0.125 0.875 10 C -0.159 4.159 11 N -0.352 5.352 12 C 0.321 3.679 13 O -0.474 6.474 14 C -0.164 4.164 15 C -0.134 4.134 16 C -0.130 4.130 17 C -0.054 4.054 18 C -0.568 4.568 19 H 0.056 0.944 20 C -0.192 4.192 21 N -0.591 5.591 22 Si 0.771 3.229 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.178 1.178 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.069 0.931 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.031 0.969 45 H 0.031 0.969 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -30.655 7.416 -8.263 32.604 hybrid contribution 1.307 0.426 -0.225 1.393 sum -29.349 7.841 -8.488 31.542 Atomic orbital electron populations 1.22120 0.93004 1.02320 1.02717 1.20639 0.97076 0.93718 0.98372 1.21693 1.00794 0.97547 0.95177 1.22080 0.89886 0.91935 0.93957 0.91359 1.22523 0.97361 0.97926 0.98162 1.22585 0.98042 0.95236 1.00312 1.22377 0.89736 0.89163 0.96685 0.87468 1.21768 1.01874 0.97859 0.94419 1.49231 1.04728 1.21294 1.59901 1.20770 0.80760 0.88431 0.77907 1.90671 1.67861 1.36057 1.52800 1.21627 0.94660 0.96738 1.03326 1.21278 0.93393 0.98154 1.00590 1.21325 0.94336 0.97162 1.00130 1.19566 0.94705 0.95299 0.95810 1.21533 0.92705 1.03518 1.39079 0.94374 1.25979 0.98921 0.99409 0.94887 1.70058 1.08951 1.33795 1.46299 0.85703 0.77705 0.79618 0.79922 1.19158 1.20616 1.17775 0.91146 0.92469 0.91945 0.93077 0.89238 0.94806 0.91719 0.88019 0.90782 0.87566 0.93111 0.88269 0.87273 0.86894 0.93237 0.92979 0.92315 0.92472 0.96900 0.96906 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.62 72.08 0.62 -0.39 16 2 C -0.08 -0.95 2.38 -11.63 -0.03 -0.98 16 3 C -0.11 -1.77 4.94 29.97 0.15 -1.62 16 4 C 0.12 2.31 3.87 45.02 0.17 2.48 16 5 H 0.07 1.61 7.97 -1.96 -0.02 1.60 16 6 C -0.12 -1.40 5.93 31.55 0.19 -1.21 16 7 C -0.12 -1.15 5.90 31.53 0.19 -0.97 16 8 C 0.12 1.66 3.76 45.04 0.17 1.83 16 9 H 0.11 1.27 7.45 -1.99 -0.01 1.25 16 10 C -0.12 -1.42 4.94 30.01 0.15 -1.27 16 11 N -0.62 -13.33 2.77 -760.75 -2.11 -15.44 16 12 C 0.53 15.55 7.93 87.67 0.70 16.25 16 13 O -0.59 -23.01 16.30 -3.04 -0.05 -23.06 16 14 C -0.12 -3.24 4.71 29.85 0.14 -3.10 16 15 C -0.10 -3.34 4.50 30.60 0.14 -3.20 16 16 C -0.09 -3.66 5.15 30.59 0.16 -3.50 16 17 C -0.02 -0.82 4.04 29.85 0.12 -0.69 16 18 C -0.53 -31.70 9.66 25.60 0.25 -31.45 16 19 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 20 C 0.00 0.29 5.47 84.66 0.46 0.75 16 21 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 22 Si 0.95 46.63 27.47 68.60 1.88 48.52 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.25 -11.98 6.54 99.48 0.65 -11.33 16 26 H 0.07 0.35 5.00 -2.39 -0.01 0.34 16 27 H 0.06 0.39 7.91 -2.39 -0.02 0.37 16 28 H 0.06 0.37 8.14 -2.39 -0.02 0.36 16 29 H 0.05 0.70 8.30 -0.94 -0.01 0.69 16 30 H 0.09 1.04 7.67 -1.80 -0.01 1.02 16 31 H 0.03 0.69 8.23 -1.79 -0.01 0.68 16 32 H 0.06 0.82 8.16 -2.28 -0.02 0.80 16 33 H 0.10 0.74 6.92 -2.54 -0.02 0.72 16 34 H 0.07 0.68 8.17 -2.23 -0.02 0.67 16 35 H 0.11 0.52 6.49 -2.57 -0.02 0.50 16 36 H 0.05 0.74 8.23 -1.82 -0.02 0.72 16 37 H 0.10 0.71 7.83 -1.81 -0.01 0.69 16 38 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.11 2.44 8.03 -2.39 -0.02 2.42 16 40 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 41 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 42 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 43 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 44 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 45 H 0.01 0.62 7.57 -2.39 -0.02 0.61 16 46 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -75.95 349.24 4.50 -71.45 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 0.90 Total: 6.32 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 3.57 Total: -27.07 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -1.81 Total: -76.16 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.05 Total: -23.06 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.88 Total: 48.52 kcal Total: -75.95 4.50 -71.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598445003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.797 kcal (2) G-P(sol) polarization free energy of solvation -75.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds