Wall clock time and date at job start Fri Apr 10 2020 17:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99904 * 2 1 4 4 H 1.48503 * 109.47369 * 274.92431 * 3 2 1 5 5 H 1.48499 * 109.47142 * 34.92376 * 3 2 1 6 6 H 1.48500 * 109.47009 * 154.92701 * 3 2 1 7 7 C 1.37875 * 120.00218 * 180.27986 * 2 1 3 8 8 H 1.08006 * 119.99696 * 357.03877 * 7 2 1 9 9 C 1.50699 * 120.00398 * 177.04519 * 7 2 1 10 10 C 1.52992 * 115.55422 * 88.23177 * 9 7 2 11 11 N 1.46903 * 109.47081 * 54.82724 * 10 9 7 12 12 C 1.47015 * 110.99814 * 52.06964 * 11 10 9 13 13 C 1.53097 * 109.29117 * 182.37258 * 12 11 10 14 14 O 1.43032 * 109.24875 * 303.16271 * 13 12 11 15 15 C 1.42979 * 113.70675 * 58.63794 * 14 13 12 16 16 C 1.52976 * 109.46871 * 61.21356 * 15 14 13 17 17 C 1.53012 * 109.46010 * 60.10081 * 16 15 14 18 18 C 1.53001 * 109.45699 * 59.97836 * 17 16 15 19 19 C 1.52996 * 109.48777 * 299.98478 * 18 17 16 20 20 C 1.52951 * 109.50721 * 181.30915 * 15 14 13 21 21 C 1.47031 * 110.99962 * 175.68956 * 11 10 9 22 22 C 1.53007 * 117.49415 * 302.56158 * 9 7 2 23 23 C 1.53002 * 117.49831 * 233.90621 * 9 7 2 24 24 H 0.97001 * 119.99918 * 4.72530 * 1 2 3 25 25 H 1.08998 * 109.47393 * 174.82779 * 10 9 7 26 26 H 1.09000 * 109.46926 * 294.83363 * 10 9 7 27 27 H 1.09004 * 109.49947 * 302.32112 * 12 11 10 28 28 H 1.08998 * 109.50173 * 62.42450 * 12 11 10 29 29 H 1.08992 * 109.50834 * 183.22456 * 13 12 11 30 30 H 1.09001 * 109.54144 * 63.11275 * 13 12 11 31 31 H 1.08996 * 109.47880 * 180.09879 * 16 15 14 32 32 H 1.08999 * 109.47240 * 300.10655 * 16 15 14 33 33 H 1.08998 * 109.47671 * 299.97961 * 17 16 15 34 34 H 1.09003 * 109.47075 * 179.97438 * 17 16 15 35 35 H 1.08999 * 109.46842 * 179.97438 * 18 17 16 36 36 H 1.08999 * 109.46494 * 59.98559 * 18 17 16 37 37 H 1.08999 * 109.46674 * 299.99970 * 19 18 17 38 38 H 1.09002 * 109.47140 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.47178 * 59.89256 * 20 15 14 40 40 H 1.08997 * 109.47949 * 179.89656 * 20 15 14 41 41 H 1.09000 * 109.51140 * 297.57497 * 21 11 10 42 42 H 1.09000 * 109.50706 * 57.67358 * 21 11 10 43 43 H 1.09000 * 117.49640 * 0.02562 * 22 9 7 44 44 H 1.08996 * 117.49450 * 145.02035 * 22 9 7 45 45 H 1.08993 * 117.49779 * 214.97658 * 23 9 7 46 46 H 1.09003 * 117.49792 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3926 2.1066 -1.3949 5 1 1.5025 2.6204 0.8015 6 1 3.5949 1.4123 0.5933 7 6 2.0046 -1.1940 -0.0058 8 1 1.4656 -2.1289 0.0379 9 6 3.5101 -1.1946 -0.0731 10 6 4.2309 -1.1234 1.2745 11 7 3.7601 -2.2132 2.1398 12 6 3.8558 -3.5097 1.4534 13 6 3.3015 -4.6071 2.3657 14 8 4.0165 -4.5963 3.6044 15 6 3.9437 -3.3489 4.2993 16 6 2.4849 -3.0400 4.6410 17 6 1.9236 -4.1509 5.5310 18 6 2.7436 -4.2345 6.8201 19 6 4.2024 -4.5437 6.4780 20 6 4.7639 -3.4332 5.5875 21 6 4.5049 -2.2388 3.4073 22 6 4.1643 -0.4884 -1.2624 23 6 4.1673 -2.0171 -1.1833 24 1 -0.4850 0.8372 -0.0692 25 1 5.3050 -1.2222 1.1177 26 1 4.0196 -0.1653 1.7494 27 1 3.2764 -3.4765 0.5306 28 1 4.8992 -3.7223 1.2210 29 1 3.4231 -5.5771 1.8836 30 1 2.2436 -4.4245 2.5545 31 1 2.4290 -2.0882 5.1692 32 1 1.9013 -2.9806 3.7224 33 1 1.9791 -5.1027 5.0027 34 1 0.8843 -3.9308 5.7750 35 1 2.3436 -5.0255 7.4544 36 1 2.6882 -3.2825 7.3481 37 1 4.2578 -5.4956 5.9499 38 1 4.7862 -4.6036 7.3965 39 1 5.8029 -3.6542 5.3430 40 1 4.7096 -2.4814 6.1160 41 1 5.5588 -2.4310 3.2064 42 1 4.3995 -1.2779 3.9108 43 1 3.5057 -0.0232 -1.9959 44 1 5.1084 0.0265 -1.0848 45 1 5.1133 -2.5072 -0.9536 46 1 3.5107 -2.5582 -1.8647 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602782412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:23 Heat of formation + Delta-G solvation = -40.858326 kcal Electronic energy + Delta-G solvation = -23939.457861 eV Core-core repulsion = 20828.589385 eV Total energy + Delta-G solvation = -3110.868476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.47209 -39.26524 -37.29615 -35.71935 -34.10489 -32.59423 -31.56793 -29.96496 -28.11751 -26.98633 -25.13557 -23.94315 -23.32673 -23.02404 -21.12597 -20.69550 -20.09705 -18.32878 -17.20294 -16.94867 -16.64380 -16.39738 -15.94115 -15.71116 -15.51523 -15.23669 -14.81331 -14.74811 -14.39247 -14.23408 -13.98523 -13.58064 -13.12746 -13.05811 -13.03154 -12.88477 -12.68095 -12.45427 -12.30155 -12.13768 -11.94764 -11.83276 -11.74245 -11.45219 -11.36779 -11.19939 -10.91679 -10.72475 -10.50213 -10.30889 -10.20856 -9.00297 -8.17715 -6.20472 1.36252 1.40286 1.51171 2.43033 2.80247 2.93061 3.16229 3.34616 3.75684 3.87864 3.89114 4.05648 4.15756 4.22733 4.27978 4.30303 4.36293 4.41349 4.43930 4.54434 4.57365 4.61107 4.66197 4.68053 4.79347 4.80212 4.83263 4.83458 4.90189 4.99902 5.03523 5.08293 5.19655 5.24125 5.32741 5.32780 5.38212 5.39520 5.48950 5.56034 5.61823 5.78054 6.21280 6.28862 6.39050 6.45221 6.84370 7.45650 8.97884 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022642 B = 0.005742 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.365518 B = 4875.407840 C = 5266.242767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.018 3.982 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.305 1.305 6 H -0.234 1.234 7 C -0.444 4.444 8 H 0.033 0.967 9 C -0.017 4.017 10 C 0.102 3.898 11 N -0.528 5.528 12 C 0.032 3.968 13 C 0.066 3.934 14 O -0.378 6.378 15 C 0.127 3.873 16 C -0.133 4.133 17 C -0.113 4.113 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.100 4.100 21 C 0.029 3.971 22 C -0.197 4.197 23 C -0.164 4.164 24 H 0.260 0.740 25 H 0.027 0.973 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.034 0.966 29 H 0.111 0.889 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.038 0.962 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.720 -7.256 11.193 17.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.232 1.232 6 H -0.157 1.157 7 C -0.482 4.482 8 H 0.051 0.949 9 C -0.018 4.018 10 C -0.026 4.026 11 N -0.252 5.252 12 C -0.096 4.096 13 C -0.011 4.011 14 O -0.297 6.297 15 C 0.087 3.913 16 C -0.171 4.171 17 C -0.151 4.151 18 C -0.151 4.151 19 C -0.147 4.147 20 C -0.138 4.138 21 C -0.099 4.099 22 C -0.235 4.235 23 C -0.201 4.201 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.052 0.948 29 H 0.129 0.871 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.056 0.944 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.188 -7.222 11.441 17.556 hybrid contribution 0.188 1.164 -0.928 1.501 sum 11.376 -6.058 10.513 16.632 Atomic orbital electron populations 1.70036 1.08180 1.27616 1.53846 1.25679 0.95067 1.02350 0.94697 0.85965 0.80467 0.79442 0.78058 1.20320 1.23233 1.15665 1.20195 0.88505 0.92238 1.47296 0.94915 1.19322 0.93236 1.02004 0.87282 1.21703 0.94214 0.93717 0.92931 1.61954 1.55443 1.03434 1.04382 1.22670 0.99216 0.89301 0.98461 1.22647 0.95506 0.98816 0.84154 1.87916 1.73573 1.34098 1.34111 1.21517 0.95120 0.82906 0.91719 1.21920 0.96161 0.99152 0.99842 1.21444 0.98911 0.98228 0.96485 1.21517 0.95205 1.02050 0.96330 1.21411 0.95828 0.98215 0.99200 1.21528 0.98705 1.00749 0.92825 1.22824 0.95346 1.00135 0.91604 1.23026 1.01834 0.95679 1.02953 1.22884 1.01364 0.92591 1.03230 0.93112 0.95505 0.92627 0.90188 0.94827 0.87121 0.93738 0.91614 0.93147 0.92660 0.92430 0.91050 0.91600 0.92337 0.90238 0.91055 0.89537 0.94425 0.90226 0.90872 0.88500 0.88553 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.01 13.95 21.45 0.30 -59.71 16 2 C 0.02 1.03 5.47 84.65 0.46 1.49 16 3 Si 0.93 44.71 24.98 68.60 1.71 46.42 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 6 H -0.23 -10.09 5.48 99.48 0.54 -9.54 16 7 C -0.44 -24.48 8.67 25.60 0.22 -24.26 16 8 H 0.03 2.04 7.88 -2.91 -0.02 2.02 16 9 C -0.02 -0.76 0.06 -52.93 0.00 -0.76 16 10 C 0.10 4.04 4.80 86.30 0.41 4.45 16 11 N -0.53 -19.91 3.89 -895.24 -3.49 -23.39 16 12 C 0.03 1.11 4.81 86.31 0.41 1.52 16 13 C 0.07 2.06 6.61 72.01 0.48 2.54 16 14 O -0.38 -11.39 8.95 -148.98 -1.33 -12.73 16 15 C 0.13 3.57 0.68 -10.80 -0.01 3.56 16 16 C -0.13 -4.03 4.26 30.59 0.13 -3.90 16 17 C -0.11 -2.89 5.78 30.60 0.18 -2.71 16 18 C -0.11 -2.25 5.92 30.59 0.18 -2.07 16 19 C -0.11 -2.11 5.78 30.60 0.18 -1.93 16 20 C -0.10 -2.17 4.95 30.58 0.15 -2.02 16 21 C 0.03 0.91 4.36 86.30 0.38 1.28 16 22 C -0.20 -7.80 7.55 30.62 0.23 -7.56 16 23 C -0.16 -6.15 8.17 30.62 0.25 -5.90 16 24 H 0.26 15.51 8.32 -92.71 -0.77 14.74 16 25 H 0.03 0.95 8.09 -2.39 -0.02 0.93 16 26 H 0.06 2.33 6.48 -2.39 -0.02 2.32 16 27 H 0.08 3.18 5.39 -2.38 -0.01 3.17 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.04 1.56 6.49 -2.39 -0.02 1.55 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.91 6.11 -2.39 -0.01 1.90 16 33 H 0.05 1.50 7.68 -2.39 -0.02 1.48 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.28 7.69 -2.39 -0.02 1.26 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.07 3.12 7.21 -2.39 -0.02 3.10 16 44 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 45 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 46 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -63.86 334.66 1.61 -62.25 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.76 Total: 23.43 kcal Atomic # 6 Polarization: -39.92 SS G_CDS: 3.65 Total: -36.27 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -3.19 Total: -83.10 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -1.33 Total: -12.73 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.71 Total: 46.42 kcal Total: -63.86 1.61 -62.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602782412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.388 kcal (2) G-P(sol) polarization free energy of solvation -63.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds