Wall clock time and date at job start Fri Apr 10 2020 17:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00004 * 2 1 4 4 H 1.48504 * 109.47051 * 264.99617 * 3 2 1 5 5 H 1.48493 * 109.47237 * 144.99379 * 3 2 1 6 6 H 1.48497 * 109.47025 * 24.99117 * 3 2 1 7 7 C 1.37877 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00031 * 187.13654 * 7 2 1 9 9 C 1.50696 * 120.00050 * 7.14050 * 7 2 1 10 10 C 1.53000 * 115.54685 * 271.28607 * 9 7 2 11 11 N 1.46896 * 109.47383 * 302.64705 * 10 9 7 12 12 C 1.47901 * 111.00080 * 77.25078 * 11 10 9 13 13 C 1.53996 * 107.05937 * 214.15498 * 12 11 10 14 14 C 1.54596 * 105.13840 * 1.22914 * 13 12 11 15 15 H 1.09002 * 110.72076 * 263.42082 * 14 13 12 16 16 C 1.53001 * 110.72375 * 140.31170 * 14 13 12 17 17 C 1.53172 * 109.54102 * 184.22738 * 16 14 13 18 18 C 1.53106 * 109.15502 * 183.24415 * 17 16 14 19 19 O 1.42904 * 109.48922 * 57.47408 * 18 17 16 20 20 C 1.42899 * 114.09736 * 298.88943 * 19 18 17 21 21 C 1.53093 * 109.41667 * 61.15770 * 20 19 18 22 22 C 1.48534 * 110.99713 * 319.85566 * 11 10 9 23 23 C 1.53001 * 117.50473 * 125.58132 * 9 7 2 24 24 C 1.53000 * 117.50082 * 56.95630 * 9 7 2 25 25 H 0.97001 * 119.99657 * 185.82114 * 1 2 3 26 26 H 1.09005 * 109.47180 * 62.64546 * 10 9 7 27 27 H 1.09004 * 109.47234 * 182.64261 * 10 9 7 28 28 H 1.08995 * 109.92168 * 333.51487 * 12 11 10 29 29 H 1.09006 * 109.91326 * 94.80410 * 12 11 10 30 30 H 1.08998 * 110.30347 * 120.14298 * 13 12 11 31 31 H 1.08998 * 110.30800 * 242.20812 * 13 12 11 32 32 H 1.08992 * 109.54476 * 304.40901 * 16 14 13 33 33 H 1.08998 * 109.52511 * 303.05671 * 17 16 14 34 34 H 1.08994 * 109.52369 * 63.25068 * 17 16 14 35 35 H 1.09000 * 109.40581 * 297.49031 * 18 17 16 36 36 H 1.08998 * 109.49347 * 177.50820 * 18 17 16 37 37 H 1.09003 * 109.48149 * 301.17735 * 20 19 18 38 38 H 1.08997 * 109.49409 * 181.14549 * 20 19 18 39 39 H 1.08998 * 109.52702 * 182.48767 * 21 20 19 40 40 H 1.09004 * 109.52307 * 62.29058 * 21 20 19 41 41 H 1.08996 * 110.66678 * 278.14964 * 22 11 10 42 42 H 1.09000 * 110.66609 * 41.28908 * 22 11 10 43 43 H 1.09005 * 117.49308 * 359.97438 * 23 9 7 44 44 H 1.08996 * 117.49978 * 145.01607 * 23 9 7 45 45 H 1.09008 * 117.49754 * 214.98229 * 24 9 7 46 46 H 1.08993 * 117.49925 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6024 1.9854 -1.3948 5 1 3.4898 1.4731 0.8031 6 1 1.3977 2.6809 0.5915 7 6 2.0046 -1.1940 -0.0005 8 1 3.0783 -1.1977 0.1157 9 6 1.2599 -2.4940 -0.1633 10 6 0.7586 -3.1340 1.1328 11 7 1.8932 -3.3607 2.0378 12 6 2.3104 -2.1009 2.6907 13 6 3.8388 -2.1678 2.8666 14 6 4.2576 -3.5210 2.2474 15 1 4.3505 -4.2857 3.0185 16 6 5.5670 -3.3780 1.4688 17 6 5.9013 -4.7049 0.7806 18 6 7.2523 -4.5767 0.0717 19 8 8.2552 -4.2066 1.0200 20 6 8.0187 -2.9505 1.6591 21 6 6.6997 -3.0140 2.4337 22 6 3.0827 -3.8423 1.2898 23 6 1.7108 -3.4308 -1.2859 24 6 0.3949 -2.6608 -1.4142 25 1 -0.4850 -0.8358 0.0852 26 1 0.0391 -2.4696 1.6115 27 1 0.2788 -4.0862 0.9060 28 1 2.0458 -1.2512 2.0615 29 1 1.8282 -2.0098 3.6641 30 1 4.3170 -1.3446 2.3358 31 1 4.0996 -2.1372 3.9245 32 1 5.4613 -2.5945 0.7185 33 1 5.9565 -5.4982 1.5261 34 1 5.1269 -4.9424 0.0514 35 1 7.1840 -3.8122 -0.7023 36 1 7.5166 -5.5315 -0.3829 37 1 7.9604 -2.1647 0.9059 38 1 8.8348 -2.7337 2.3483 39 1 6.4954 -2.0434 2.8856 40 1 6.7714 -3.7722 3.2136 41 1 3.0155 -4.9152 1.1099 42 1 3.1923 -3.2997 0.3508 43 1 2.5458 -3.1065 -1.9070 44 1 1.6504 -4.5033 -1.1011 45 1 -0.5313 -3.2269 -1.3139 46 1 0.3647 -1.8305 -2.1196 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602798118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:31 Heat of formation + Delta-G solvation = -33.797367 kcal Electronic energy + Delta-G solvation = -23908.224507 eV Core-core repulsion = 20797.662217 eV Total energy + Delta-G solvation = -3110.562289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.78378 -38.58118 -36.25703 -33.90960 -32.04845 -31.13399 -30.28217 -28.04900 -25.66446 -25.09877 -23.64132 -23.36405 -21.46248 -20.42835 -20.23616 -19.42231 -19.02846 -16.72585 -16.18624 -15.94035 -15.31425 -14.65593 -14.58567 -14.36693 -13.81090 -13.67548 -13.48418 -13.26870 -13.00621 -12.65553 -12.33966 -12.11443 -11.88298 -11.34352 -11.28660 -11.12840 -11.05742 -10.87146 -10.68791 -10.64974 -10.44084 -10.36522 -10.21015 -10.05799 -9.95937 -9.86482 -9.51283 -9.34542 -8.61150 -8.50212 -8.37922 -7.33475 -6.41654 -4.11399 3.35360 3.36063 3.52842 3.89214 4.41444 4.72730 4.75988 4.93888 5.00728 5.06328 5.18482 5.23219 5.31796 5.42261 5.45800 5.49661 5.62125 5.69395 5.70776 5.88747 5.94604 5.96670 6.04205 6.11048 6.15956 6.17753 6.21611 6.29490 6.35234 6.39511 6.45281 6.52438 6.55019 6.61393 6.80417 6.86761 6.88050 6.97446 7.13382 7.20043 7.25170 7.39732 7.81475 7.95636 8.22224 8.31894 8.77716 9.55097 10.95579 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017262 B = 0.006250 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.646052 B = 4479.115454 C = 4923.603031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.029 3.971 3 Si 1.056 2.944 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.563 4.563 8 H 0.053 0.947 9 C -0.003 4.003 10 C 0.079 3.921 11 N -0.509 5.509 12 C 0.015 3.985 13 C -0.116 4.116 14 C -0.082 4.082 15 H 0.068 0.932 16 C -0.079 4.079 17 C -0.149 4.149 18 C 0.060 3.940 19 O -0.388 6.388 20 C 0.060 3.940 21 C -0.149 4.149 22 C 0.035 3.965 23 C -0.196 4.196 24 C -0.179 4.179 25 H 0.277 0.723 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.105 0.895 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.838 -6.201 2.864 12.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.885 3.115 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.600 4.600 8 H 0.072 0.928 9 C -0.004 4.004 10 C -0.050 4.050 11 N -0.231 5.231 12 C -0.112 4.112 13 C -0.154 4.154 14 C -0.101 4.101 15 H 0.086 0.914 16 C -0.098 4.098 17 C -0.186 4.186 18 C -0.016 4.016 19 O -0.307 6.307 20 C -0.016 4.016 21 C -0.187 4.187 22 C -0.092 4.092 23 C -0.233 4.233 24 C -0.217 4.217 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.123 0.877 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.590 -5.046 3.242 12.171 hybrid contribution 0.041 -0.945 -0.678 1.164 sum 10.631 -5.992 2.564 12.470 Atomic orbital electron populations 1.70681 1.06835 1.31612 1.44224 1.25655 0.96517 1.01901 0.93665 0.83723 0.75014 0.75894 0.76864 1.21500 1.21286 1.20962 1.21154 0.94021 0.89816 1.55039 0.92838 1.19769 0.98449 0.95486 0.86741 1.21849 0.93053 0.97249 0.92817 1.65049 1.05336 1.25954 1.26754 1.23219 0.93294 0.95708 0.99009 1.22328 0.96968 0.96815 0.99267 1.22038 0.93333 0.97480 0.97249 0.91400 1.21203 0.94126 0.97175 0.97252 1.22225 0.97389 0.98328 1.00689 1.22591 0.87989 1.00304 0.90751 1.87880 1.47218 1.38255 1.57337 1.22580 0.97413 0.85742 0.95903 1.22235 0.94938 1.02587 0.98892 1.23411 0.89027 0.99059 0.97753 1.22914 0.98285 0.95586 1.06516 1.22722 0.92455 1.01827 1.04700 0.91208 0.91836 0.93800 0.87687 0.93287 0.91893 0.92895 0.90783 0.91371 0.90567 0.93262 0.89247 0.93290 0.89289 0.90772 0.91343 0.92672 0.89816 0.90508 0.91676 0.91745 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 13.39 55.43 0.74 -24.36 16 2 C 0.03 0.76 4.98 -17.82 -0.09 0.67 16 3 Si 1.06 23.69 29.91 -169.99 -5.08 18.61 16 4 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.56 -13.94 4.98 -34.44 -0.17 -14.12 16 8 H 0.05 1.35 7.35 -52.49 -0.39 0.97 16 9 C 0.00 -0.06 0.19 -155.66 -0.03 -0.09 16 10 C 0.08 1.72 5.58 -3.83 -0.02 1.70 16 11 N -0.51 -10.26 5.54 -230.45 -1.28 -11.53 16 12 C 0.02 0.30 6.01 -2.75 -0.02 0.29 16 13 C -0.12 -1.97 5.65 -25.37 -0.14 -2.11 16 14 C -0.08 -1.29 2.60 -88.76 -0.23 -1.53 16 15 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 16 C -0.08 -1.10 1.67 -90.43 -0.15 -1.25 16 17 C -0.15 -1.89 5.17 -26.59 -0.14 -2.03 16 18 C 0.06 0.72 6.84 37.21 0.25 0.97 16 19 O -0.39 -5.14 10.77 -35.23 -0.38 -5.51 16 20 C 0.06 0.70 6.84 37.21 0.25 0.96 16 21 C -0.15 -1.83 5.20 -26.59 -0.14 -1.97 16 22 C 0.04 0.64 4.12 -1.89 -0.01 0.63 16 23 C -0.20 -4.06 7.81 -26.73 -0.21 -4.26 16 24 C -0.18 -4.01 8.64 -26.73 -0.23 -4.24 16 25 H 0.28 7.72 6.33 -40.82 -0.26 7.46 16 26 H 0.06 1.50 7.63 -51.93 -0.40 1.10 16 27 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 28 H 0.11 2.45 4.54 -51.93 -0.24 2.22 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 1.11 7.76 -51.93 -0.40 0.71 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.99 7.45 -51.93 -0.39 0.60 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.89 7.50 -51.93 -0.39 0.50 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 42 H 0.08 1.69 3.81 -51.93 -0.20 1.49 16 43 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.06 1.36 8.14 -51.92 -0.42 0.93 16 46 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -26.64 339.75 -10.15 -36.80 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -8.21 Total: 7.26 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -1.07 Total: -26.37 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.53 Total: -35.89 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.38 Total: -5.51 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -5.08 Total: 18.61 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.64 -10.15 -36.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602798118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.999 kcal (2) G-P(sol) polarization free energy of solvation -26.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds