Wall clock time and date at job start Fri Apr 10 2020 17:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00004 * 2 1 4 4 H 1.48504 * 109.47051 * 264.99617 * 3 2 1 5 5 H 1.48493 * 109.47237 * 144.99379 * 3 2 1 6 6 H 1.48497 * 109.47025 * 24.99117 * 3 2 1 7 7 C 1.37877 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00031 * 187.13654 * 7 2 1 9 9 C 1.50696 * 120.00050 * 7.14050 * 7 2 1 10 10 C 1.53000 * 115.54685 * 271.28607 * 9 7 2 11 11 N 1.46896 * 109.47383 * 302.64705 * 10 9 7 12 12 C 1.47901 * 111.00080 * 77.25078 * 11 10 9 13 13 C 1.53996 * 107.05937 * 214.15498 * 12 11 10 14 14 C 1.54596 * 105.13840 * 1.22914 * 13 12 11 15 15 H 1.09002 * 110.72076 * 263.42082 * 14 13 12 16 16 C 1.53001 * 110.72375 * 140.31170 * 14 13 12 17 17 C 1.53172 * 109.54102 * 184.22738 * 16 14 13 18 18 C 1.53106 * 109.15502 * 183.24415 * 17 16 14 19 19 O 1.42904 * 109.48922 * 57.47408 * 18 17 16 20 20 C 1.42899 * 114.09736 * 298.88943 * 19 18 17 21 21 C 1.53093 * 109.41667 * 61.15770 * 20 19 18 22 22 C 1.48534 * 110.99713 * 319.85566 * 11 10 9 23 23 C 1.53001 * 117.50473 * 125.58132 * 9 7 2 24 24 C 1.53000 * 117.50082 * 56.95630 * 9 7 2 25 25 H 0.97001 * 119.99657 * 185.82114 * 1 2 3 26 26 H 1.09005 * 109.47180 * 62.64546 * 10 9 7 27 27 H 1.09004 * 109.47234 * 182.64261 * 10 9 7 28 28 H 1.08995 * 109.92168 * 333.51487 * 12 11 10 29 29 H 1.09006 * 109.91326 * 94.80410 * 12 11 10 30 30 H 1.08998 * 110.30347 * 120.14298 * 13 12 11 31 31 H 1.08998 * 110.30800 * 242.20812 * 13 12 11 32 32 H 1.08992 * 109.54476 * 304.40901 * 16 14 13 33 33 H 1.08998 * 109.52511 * 303.05671 * 17 16 14 34 34 H 1.08994 * 109.52369 * 63.25068 * 17 16 14 35 35 H 1.09000 * 109.40581 * 297.49031 * 18 17 16 36 36 H 1.08998 * 109.49347 * 177.50820 * 18 17 16 37 37 H 1.09003 * 109.48149 * 301.17735 * 20 19 18 38 38 H 1.08997 * 109.49409 * 181.14549 * 20 19 18 39 39 H 1.08998 * 109.52702 * 182.48767 * 21 20 19 40 40 H 1.09004 * 109.52307 * 62.29058 * 21 20 19 41 41 H 1.08996 * 110.66678 * 278.14964 * 22 11 10 42 42 H 1.09000 * 110.66609 * 41.28908 * 22 11 10 43 43 H 1.09005 * 117.49308 * 359.97438 * 23 9 7 44 44 H 1.08996 * 117.49978 * 145.01607 * 23 9 7 45 45 H 1.09008 * 117.49754 * 214.98229 * 24 9 7 46 46 H 1.08993 * 117.49925 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6024 1.9854 -1.3948 5 1 3.4898 1.4731 0.8031 6 1 1.3977 2.6809 0.5915 7 6 2.0046 -1.1940 -0.0005 8 1 3.0783 -1.1977 0.1157 9 6 1.2599 -2.4940 -0.1633 10 6 0.7586 -3.1340 1.1328 11 7 1.8932 -3.3607 2.0378 12 6 2.3104 -2.1009 2.6907 13 6 3.8388 -2.1678 2.8666 14 6 4.2576 -3.5210 2.2474 15 1 4.3505 -4.2857 3.0185 16 6 5.5670 -3.3780 1.4688 17 6 5.9013 -4.7049 0.7806 18 6 7.2523 -4.5767 0.0717 19 8 8.2552 -4.2066 1.0200 20 6 8.0187 -2.9505 1.6591 21 6 6.6997 -3.0140 2.4337 22 6 3.0827 -3.8423 1.2898 23 6 1.7108 -3.4308 -1.2859 24 6 0.3949 -2.6608 -1.4142 25 1 -0.4850 -0.8358 0.0852 26 1 0.0391 -2.4696 1.6115 27 1 0.2788 -4.0862 0.9060 28 1 2.0458 -1.2512 2.0615 29 1 1.8282 -2.0098 3.6641 30 1 4.3170 -1.3446 2.3358 31 1 4.0996 -2.1372 3.9245 32 1 5.4613 -2.5945 0.7185 33 1 5.9565 -5.4982 1.5261 34 1 5.1269 -4.9424 0.0514 35 1 7.1840 -3.8122 -0.7023 36 1 7.5166 -5.5315 -0.3829 37 1 7.9604 -2.1647 0.9059 38 1 8.8348 -2.7337 2.3483 39 1 6.4954 -2.0434 2.8856 40 1 6.7714 -3.7722 3.2136 41 1 3.0155 -4.9152 1.1099 42 1 3.1923 -3.2997 0.3508 43 1 2.5458 -3.1065 -1.9070 44 1 1.6504 -4.5033 -1.1011 45 1 -0.5313 -3.2269 -1.3139 46 1 0.3647 -1.8305 -2.1196 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602798118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:30 Heat of formation + Delta-G solvation = -48.601590 kcal Electronic energy + Delta-G solvation = -23908.866466 eV Core-core repulsion = 20797.662217 eV Total energy + Delta-G solvation = -3111.204249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.08052 -39.91212 -37.80258 -35.19467 -34.01697 -32.12310 -31.66116 -29.47417 -27.31751 -26.89227 -24.86756 -24.42043 -23.19561 -22.03946 -21.41901 -20.80022 -20.67640 -18.56033 -17.30617 -16.87985 -16.67078 -16.19387 -15.97326 -15.63031 -15.62059 -14.91663 -14.85543 -14.66882 -14.57521 -14.28086 -13.76088 -13.53959 -13.26508 -12.90752 -12.69524 -12.43738 -12.36606 -12.25849 -12.19173 -12.17141 -12.03392 -11.99607 -11.80519 -11.49222 -11.20785 -11.08181 -11.03723 -10.57269 -10.39788 -10.36915 -10.15900 -9.03224 -8.47462 -6.14414 1.51502 1.56188 1.73302 2.55887 2.99452 3.17874 3.23668 3.48527 3.63898 3.83042 3.90472 4.08975 4.11115 4.19089 4.21429 4.35341 4.39537 4.42031 4.48061 4.48720 4.60633 4.66573 4.73974 4.81402 4.83004 4.84830 4.90989 4.92592 4.99360 5.01136 5.04003 5.05475 5.15593 5.21895 5.28786 5.32357 5.38062 5.40912 5.45225 5.61134 5.67540 6.13974 6.19979 6.28079 6.33320 6.38568 6.74073 7.55994 8.90388 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017262 B = 0.006250 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.646052 B = 4479.115454 C = 4923.603031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 1.092 2.908 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.291 1.291 7 C -0.547 4.547 8 H 0.046 0.954 9 C -0.019 4.019 10 C 0.089 3.911 11 N -0.509 5.509 12 C 0.013 3.987 13 C -0.109 4.109 14 C -0.071 4.071 15 H 0.079 0.921 16 C -0.075 4.075 17 C -0.144 4.144 18 C 0.059 3.941 19 O -0.400 6.400 20 C 0.058 3.942 21 C -0.144 4.144 22 C 0.037 3.963 23 C -0.167 4.167 24 C -0.186 4.186 25 H 0.265 0.735 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.107 0.893 37 H 0.048 0.952 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.930 -7.440 3.410 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.215 4.215 3 Si 0.917 3.083 4 H -0.209 1.209 5 H -0.192 1.192 6 H -0.217 1.217 7 C -0.585 4.585 8 H 0.064 0.936 9 C -0.021 4.021 10 C -0.041 4.041 11 N -0.231 5.231 12 C -0.115 4.115 13 C -0.147 4.147 14 C -0.090 4.090 15 H 0.097 0.903 16 C -0.094 4.094 17 C -0.182 4.182 18 C -0.017 4.017 19 O -0.320 6.320 20 C -0.018 4.018 21 C -0.181 4.181 22 C -0.091 4.091 23 C -0.204 4.204 24 C -0.225 4.225 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.066 0.934 38 H 0.127 0.873 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.703 -6.299 3.784 14.676 hybrid contribution -0.616 -0.605 -0.839 1.204 sum 12.088 -6.904 2.945 14.229 Atomic orbital electron populations 1.70784 1.07790 1.30938 1.47327 1.26658 0.96519 1.04859 0.93508 0.83251 0.74750 0.73031 0.77312 1.20859 1.19247 1.21726 1.21259 0.93596 0.90682 1.52967 0.93574 1.19793 0.99116 0.95657 0.87542 1.21679 0.93246 0.96889 0.92248 1.65078 1.05738 1.25736 1.26577 1.23140 0.95686 0.94361 0.98273 1.22280 0.94415 0.97329 1.00724 1.21985 0.93276 0.96786 0.96940 0.90295 1.21125 0.93839 0.97397 0.97024 1.22179 0.97792 0.97538 1.00674 1.22666 0.87359 1.01209 0.90462 1.87870 1.47654 1.38845 1.57596 1.22692 0.97729 0.85259 0.96149 1.22192 0.94514 1.02867 0.98574 1.23404 0.89138 0.99222 0.97303 1.22873 0.96849 0.96388 1.04339 1.22645 0.93954 1.01771 1.04097 0.92438 0.94580 0.92694 0.91162 0.93137 0.92756 0.90676 0.92830 0.90841 0.90928 0.93459 0.87482 0.93389 0.87328 0.90490 0.90777 0.91573 0.91724 0.90637 0.89334 0.90564 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.55 13.39 21.45 0.29 -53.26 16 2 C -0.01 -0.79 4.98 84.65 0.42 -0.36 16 3 Si 1.09 48.20 29.91 68.60 2.05 50.25 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.55 -27.38 4.98 25.60 0.13 -27.25 16 8 H 0.05 2.34 7.35 -2.91 -0.02 2.32 16 9 C -0.02 -0.88 0.19 -52.93 -0.01 -0.89 16 10 C 0.09 3.85 5.58 86.30 0.48 4.33 16 11 N -0.51 -20.07 5.54 -883.00 -4.89 -24.96 16 12 C 0.01 0.53 6.01 86.45 0.52 1.05 16 13 C -0.11 -3.55 5.65 31.47 0.18 -3.37 16 14 C -0.07 -2.08 2.60 -9.59 -0.02 -2.10 16 15 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 16 C -0.07 -1.94 1.67 -10.67 -0.02 -1.95 16 17 C -0.14 -3.31 5.17 30.69 0.16 -3.15 16 18 C 0.06 1.27 6.84 72.02 0.49 1.77 16 19 O -0.40 -9.54 10.77 -148.98 -1.60 -11.14 16 20 C 0.06 1.20 6.84 72.01 0.49 1.70 16 21 C -0.14 -3.15 5.20 30.69 0.16 -2.99 16 22 C 0.04 1.28 4.12 86.65 0.36 1.63 16 23 C -0.17 -6.72 7.81 30.59 0.24 -6.48 16 24 C -0.19 -8.39 8.64 30.59 0.26 -8.12 16 25 H 0.27 15.38 6.33 -92.71 -0.59 14.79 16 26 H 0.04 1.74 7.63 -2.38 -0.02 1.72 16 27 H 0.05 2.23 8.11 -2.38 -0.02 2.21 16 28 H 0.07 3.33 4.54 -2.39 -0.01 3.32 16 29 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.05 1.85 7.76 -2.39 -0.02 1.83 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 1.62 8.12 -2.39 -0.02 1.60 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.71 7.45 -2.39 -0.02 1.70 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.08 1.64 7.50 -2.39 -0.02 1.63 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 2.15 8.11 -2.39 -0.02 2.13 16 42 H 0.06 2.52 3.81 -2.39 -0.01 2.51 16 43 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 44 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 46 H 0.06 2.79 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -57.20 339.75 0.79 -56.40 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 1.11 Total: 28.92 kcal Atomic # 6 Polarization: -50.04 SS G_CDS: 3.84 Total: -46.20 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -4.60 Total: -78.22 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.60 Total: -11.14 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.05 Total: 50.25 kcal Total: -57.20 0.79 -56.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602798118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.799 kcal (2) G-P(sol) polarization free energy of solvation -57.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds