Wall clock time and date at job start Fri Apr 10 2020 17:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99705 * 2 1 4 4 H 1.48502 * 109.46986 * 185.00015 * 3 2 1 5 5 H 1.48497 * 109.47188 * 305.00031 * 3 2 1 6 6 H 1.48502 * 109.47074 * 64.99730 * 3 2 1 7 7 C 1.37874 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00359 * 162.99447 * 7 2 1 9 9 C 1.50702 * 119.99779 * 342.99067 * 7 2 1 10 10 C 1.52999 * 115.55036 * 325.88460 * 9 7 2 11 11 N 1.46895 * 109.47485 * 282.90813 * 10 9 7 12 12 C 1.46849 * 111.00372 * 184.42099 * 11 10 9 13 13 C 1.53043 * 109.52457 * 185.83586 * 12 11 10 14 14 C 1.53120 * 109.27660 * 300.81990 * 13 12 11 15 15 C 1.53002 * 109.51842 * 177.55994 * 14 13 12 16 16 H 1.09007 * 110.98845 * 302.74207 * 15 14 13 17 17 C 1.55451 * 111.14716 * 66.91719 * 15 14 13 18 18 C 1.54384 * 102.18485 * 151.99046 * 17 15 14 19 19 O 1.43241 * 107.66340 * 338.74570 * 18 17 15 20 20 C 1.43647 * 109.97560 * 358.23932 * 19 18 17 21 21 C 1.53120 * 109.15845 * 57.65675 * 14 13 12 22 22 C 1.46853 * 110.99879 * 308.62960 * 11 10 9 23 23 C 1.52998 * 117.51788 * 111.58531 * 9 7 2 24 24 C 1.52995 * 117.49681 * 180.21665 * 9 7 2 25 25 H 0.96999 * 120.00472 * 5.01479 * 1 2 3 26 26 H 1.08998 * 109.47089 * 162.90172 * 10 9 7 27 27 H 1.09004 * 109.47015 * 42.90755 * 10 9 7 28 28 H 1.09001 * 109.46224 * 65.82142 * 12 11 10 29 29 H 1.08999 * 109.44949 * 305.84682 * 12 11 10 30 30 H 1.09000 * 109.49971 * 180.87501 * 13 12 11 31 31 H 1.08996 * 109.53087 * 60.78292 * 13 12 11 32 32 H 1.08994 * 109.52099 * 297.68466 * 14 13 12 33 33 H 1.09004 * 110.83218 * 33.84596 * 17 15 14 34 34 H 1.08992 * 110.92490 * 270.17718 * 17 15 14 35 35 H 1.09000 * 109.83329 * 219.18429 * 18 17 15 36 36 H 1.08999 * 109.83188 * 98.29968 * 18 17 15 37 37 H 1.08991 * 110.31111 * 143.34516 * 20 19 18 38 38 H 1.09005 * 110.30797 * 265.41837 * 20 19 18 39 39 H 1.08990 * 109.50788 * 62.28900 * 21 14 13 40 40 H 1.09010 * 109.49748 * 182.40395 * 21 14 13 41 41 H 1.08997 * 109.45902 * 294.17804 * 22 11 10 42 42 H 1.08995 * 109.46092 * 54.15250 * 22 11 10 43 43 H 1.08995 * 117.50151 * 214.96846 * 23 9 7 44 44 H 1.09000 * 117.50103 * 359.97438 * 23 9 7 45 45 H 1.08997 * 117.50183 * 359.97438 * 24 9 7 46 46 H 1.09005 * 117.49718 * 144.97801 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7045 1.3492 -0.1220 5 1 1.8011 2.4480 -1.1468 6 1 1.9840 2.3424 1.2689 7 6 2.0046 -1.1940 -0.0005 8 1 3.0491 -1.2143 -0.2741 9 6 1.3005 -2.4707 0.3807 10 6 0.2203 -2.3331 1.4554 11 7 0.8548 -2.2090 2.7744 12 6 -0.1527 -2.1800 3.8425 13 6 0.5314 -1.9047 5.1835 14 6 1.5632 -3.0020 5.4593 15 6 2.2933 -2.6995 6.7694 16 1 2.7689 -1.7193 6.7341 17 6 1.3321 -2.8116 7.9859 18 6 2.2954 -3.2017 9.1275 19 8 3.4696 -3.7657 8.5318 20 6 3.3232 -3.8080 7.1034 21 6 2.5726 -3.0432 4.3086 22 6 1.8294 -3.2855 2.9930 23 6 1.0735 -3.5087 -0.7202 24 6 2.1214 -3.7617 0.3655 25 1 -0.4851 0.8368 -0.0734 26 1 -0.4202 -3.2149 1.4418 27 1 -0.3797 -1.4452 1.2558 28 1 -0.6635 -3.1418 3.8860 29 1 -0.8777 -1.3926 3.6362 30 1 -0.2147 -1.8987 5.9781 31 1 1.0308 -0.9366 5.1460 32 1 1.0587 -3.9650 5.5373 33 1 0.5887 -3.5918 7.8220 34 1 0.8528 -1.8548 8.1927 35 1 1.8206 -3.9370 9.7770 36 1 2.5625 -2.3164 9.7047 37 1 4.2765 -3.5972 6.6190 38 1 2.9476 -4.7822 6.7903 39 1 3.1043 -2.0932 4.2566 40 1 3.2849 -3.8508 4.4782 41 1 1.3092 -4.2421 3.0405 42 1 2.5438 -3.3011 2.1700 43 1 0.1547 -4.0934 -0.6789 44 1 1.4330 -3.2680 -1.7207 45 1 3.1706 -3.6877 0.0794 46 1 1.8921 -4.5129 1.1214 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602804087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:41 Heat of formation + Delta-G solvation = -32.945978 kcal Electronic energy + Delta-G solvation = -23178.708165 eV Core-core repulsion = 20068.182794 eV Total energy + Delta-G solvation = -3110.525370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.94752 -39.85800 -37.90629 -34.97556 -34.19780 -32.06508 -31.48851 -29.96879 -27.79885 -26.82749 -24.64017 -24.01264 -22.97216 -22.46060 -21.35661 -20.87211 -20.59554 -18.11281 -17.52218 -17.02080 -16.67243 -16.17940 -15.84771 -15.75205 -15.42510 -15.33342 -14.61735 -14.40944 -14.38152 -14.15103 -13.96650 -13.51161 -13.20624 -12.96929 -12.82654 -12.76251 -12.48561 -12.33035 -12.22559 -12.11773 -12.04484 -11.86962 -11.77638 -11.46321 -11.30484 -11.06032 -10.97685 -10.90390 -10.45240 -10.18983 -9.88008 -8.83673 -8.00826 -6.06132 1.42267 1.47794 1.56253 2.46732 2.97351 2.99138 3.28548 3.48947 3.72146 3.75522 3.89497 4.05259 4.18435 4.23319 4.33078 4.35005 4.39462 4.44155 4.54997 4.58662 4.60200 4.70902 4.74099 4.83571 4.85046 4.87297 4.89617 4.90611 4.96287 5.00812 5.06302 5.13786 5.14487 5.16763 5.27949 5.28052 5.35149 5.49210 5.55719 5.59683 5.67618 6.07189 6.18049 6.41204 6.59503 6.68989 6.90927 7.53171 8.98667 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.021250 B = 0.004653 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.357561 B = 6016.546855 C = 6441.539339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.494 4.494 8 H 0.045 0.955 9 C 0.036 3.964 10 C 0.091 3.909 11 N -0.532 5.532 12 C 0.056 3.944 13 C -0.099 4.099 14 C -0.064 4.064 15 C -0.110 4.110 16 H 0.082 0.918 17 C -0.146 4.146 18 C 0.045 3.955 19 O -0.411 6.411 20 C 0.054 3.946 21 C -0.107 4.107 22 C 0.042 3.958 23 C -0.213 4.213 24 C -0.190 4.190 25 H 0.261 0.739 26 H -0.015 1.015 27 H 0.106 0.894 28 H 0.023 0.977 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.016 0.984 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.214 -6.038 15.501 16.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.158 4.158 3 Si 0.772 3.228 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.531 4.531 8 H 0.064 0.936 9 C 0.035 3.965 10 C -0.036 4.036 11 N -0.256 5.256 12 C -0.072 4.072 13 C -0.136 4.136 14 C -0.082 4.082 15 C -0.128 4.128 16 H 0.100 0.900 17 C -0.183 4.183 18 C -0.031 4.031 19 O -0.332 6.332 20 C -0.022 4.022 21 C -0.145 4.145 22 C -0.086 4.086 23 C -0.252 4.252 24 C -0.228 4.228 25 H 0.071 0.929 26 H 0.003 0.997 27 H 0.123 0.877 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.034 0.966 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.486 -5.523 15.697 16.707 hybrid contribution -0.389 0.161 -0.767 0.875 sum 1.097 -5.361 14.930 15.902 Atomic orbital electron populations 1.69803 1.07082 1.27008 1.49781 1.25400 0.95226 1.01349 0.93873 0.85730 0.79238 0.80482 0.77376 1.19733 1.21019 1.20690 1.20624 0.95611 0.91496 1.45386 0.93632 1.19041 0.95518 0.88069 0.93834 1.21813 0.95085 0.99796 0.86909 1.61786 1.16201 1.46102 1.01545 1.22054 0.93869 0.98952 0.92313 1.21553 0.98158 0.98798 0.95130 1.21028 0.95552 0.98777 0.92889 1.22837 0.96002 0.99515 0.94491 0.90005 1.23200 0.98104 1.03621 0.93371 1.23259 0.85372 0.98505 0.95936 1.88357 1.40326 1.84227 1.20254 1.23500 0.99838 0.98349 0.80470 1.21661 0.97657 1.01997 0.93187 1.22625 0.95988 0.90835 0.99121 1.23070 0.99426 1.07480 0.95196 1.23073 0.95924 1.02277 1.01479 0.92930 0.99691 0.87681 0.95901 0.92662 0.89791 0.92423 0.90947 0.89863 0.88868 0.90600 0.90760 0.89560 0.91679 0.92452 0.90356 0.96573 0.89429 0.91173 0.91380 0.90399 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.90 10.75 21.45 0.23 -49.67 16 2 C 0.04 2.26 5.16 84.65 0.44 2.69 16 3 Si 0.94 43.53 29.57 68.60 2.03 45.56 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.49 -26.94 9.02 25.60 0.23 -26.70 16 8 H 0.05 2.52 7.87 -2.91 -0.02 2.50 16 9 C 0.04 1.77 1.57 -52.93 -0.08 1.69 16 10 C 0.09 4.32 4.86 86.30 0.42 4.74 16 11 N -0.53 -21.75 4.77 -896.36 -4.27 -26.02 16 12 C 0.06 1.91 5.46 86.33 0.47 2.38 16 13 C -0.10 -2.60 5.20 30.65 0.16 -2.44 16 14 C -0.06 -1.49 1.76 -10.71 -0.02 -1.51 16 15 C -0.11 -2.19 2.61 -9.28 -0.02 -2.21 16 16 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 17 C -0.15 -2.35 5.77 31.91 0.18 -2.16 16 18 C 0.05 0.78 7.79 72.45 0.56 1.35 16 19 O -0.41 -9.53 11.36 -148.98 -1.69 -11.23 16 20 C 0.05 1.12 6.27 72.65 0.46 1.57 16 21 C -0.11 -3.00 5.13 30.65 0.16 -2.84 16 22 C 0.04 1.47 3.95 86.32 0.34 1.82 16 23 C -0.21 -9.72 9.88 30.59 0.30 -9.42 16 24 C -0.19 -7.97 7.24 30.59 0.22 -7.75 16 25 H 0.26 13.82 8.32 -92.71 -0.77 13.05 16 26 H -0.01 -0.69 7.97 -2.39 -0.02 -0.71 16 27 H 0.11 5.66 5.15 -2.39 -0.01 5.65 16 28 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.05 2.00 8.12 -2.39 -0.02 1.99 16 30 H 0.08 1.78 7.62 -2.39 -0.02 1.76 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.07 1.63 8.11 -2.39 -0.02 1.61 16 33 H 0.08 1.25 8.01 -2.39 -0.02 1.23 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.72 8.13 -2.39 -0.02 1.70 16 38 H 0.07 1.26 8.03 -2.38 -0.02 1.24 16 39 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.08 1.85 7.44 -2.38 -0.02 1.83 16 41 H 0.02 0.55 7.69 -2.39 -0.02 0.53 16 42 H 0.09 3.42 4.31 -2.39 -0.01 3.41 16 43 H 0.07 3.02 8.11 -2.39 -0.02 3.00 16 44 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 45 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 46 H 0.09 3.45 6.08 -2.38 -0.01 3.43 16 Total: -1.00 -59.18 343.68 1.04 -58.14 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.93 Total: 22.04 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 3.82 Total: -38.81 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -4.04 Total: -75.69 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -1.69 Total: -11.23 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -59.18 1.04 -58.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602804087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.192 kcal (2) G-P(sol) polarization free energy of solvation -59.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds