Wall clock time and date at job start Fri Apr 10 2020 17:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.54058 * 2 1 4 4 C 1.54899 * 110.48300 * 237.39321 * 2 1 3 5 5 C 1.54967 * 102.77508 * 203.40621 * 4 2 1 6 6 C 1.54269 * 104.16061 * 37.88607 * 5 4 2 7 7 H 1.08999 * 110.02619 * 95.75455 * 6 5 4 8 8 C 1.50698 * 110.03403 * 217.13597 * 6 5 4 9 9 O 1.21280 * 119.99912 * 117.90932 * 8 6 5 10 10 N 1.34777 * 119.99915 * 297.91050 * 8 6 5 11 11 C 1.46928 * 120.63052 * 179.97438 * 10 8 6 12 12 C 1.53187 * 108.77623 * 126.36901 * 11 10 8 13 13 C 1.53036 * 109.33909 * 54.61900 * 12 11 10 14 14 C 1.52999 * 109.46209 * 178.63045 * 13 12 11 15 15 C 1.50708 * 109.47341 * 185.00160 * 14 13 12 16 16 H 1.07993 * 119.99846 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99603 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99389 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00547 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47056 * 89.99629 * 19 17 15 21 21 H 1.48504 * 109.47148 * 210.00126 * 19 17 15 22 22 H 1.48503 * 109.46903 * 330.00062 * 19 17 15 23 23 C 1.53042 * 109.54058 * 298.68652 * 13 12 11 24 24 C 1.46927 * 120.63332 * 359.97438 * 10 8 6 25 25 C 1.53875 * 106.63784 * 336.44859 * 6 5 4 26 26 H 1.08995 * 109.47423 * 297.38383 * 1 2 3 27 27 H 1.09005 * 109.47374 * 57.38256 * 1 2 3 28 28 H 1.09003 * 109.47210 * 177.38199 * 1 2 3 29 29 H 1.08995 * 110.75911 * 321.69267 * 4 2 1 30 30 H 1.09001 * 110.75517 * 84.88079 * 4 2 1 31 31 H 1.09002 * 110.47594 * 279.23560 * 5 4 2 32 32 H 1.08998 * 110.53077 * 156.57096 * 5 4 2 33 33 H 1.09000 * 109.58414 * 6.58067 * 11 10 8 34 34 H 1.08999 * 109.58551 * 246.15992 * 11 10 8 35 35 H 1.09002 * 109.49796 * 174.58834 * 12 11 10 36 36 H 1.09000 * 109.49812 * 294.65558 * 12 11 10 37 37 H 1.08998 * 109.46343 * 58.67009 * 13 12 11 38 38 H 1.09000 * 109.47164 * 304.99969 * 14 13 12 39 39 H 1.09003 * 109.47042 * 65.00149 * 14 13 12 40 40 H 0.96998 * 119.99936 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.46473 * 301.36154 * 23 13 12 42 42 H 1.09000 * 109.52301 * 181.30261 * 23 13 12 43 43 H 1.08999 * 109.58621 * 353.42243 * 24 10 8 44 44 H 1.09005 * 109.58884 * 113.83819 * 24 10 8 45 45 H 1.08999 * 110.03155 * 119.26475 * 25 6 5 46 46 H 1.09007 * 110.02905 * 240.68470 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0206 0.0000 4 6 2.0720 -0.7819 -1.2224 5 6 3.4912 -1.1991 -0.7604 6 6 3.3165 -1.5406 0.7338 7 1 3.1695 -2.6137 0.8568 8 6 4.5280 -1.0936 1.5106 9 8 4.4155 -0.2558 2.3803 10 7 5.7365 -1.6248 1.2389 11 6 6.9270 -1.1987 1.9872 12 6 7.6170 -2.4389 2.5638 13 6 7.9063 -3.4293 1.4336 14 6 8.6261 -4.6543 2.0012 15 6 9.0202 -5.5728 0.8732 16 1 8.7807 -5.3094 -0.1464 17 6 9.6864 -6.7494 1.1431 18 7 10.0299 -7.5512 0.1588 19 14 10.1000 -7.2053 2.9067 20 1 8.9842 -7.9936 3.4888 21 1 11.3438 -8.0163 2.9296 22 1 10.3007 -5.9684 3.7036 23 6 6.5901 -3.8653 0.7857 24 6 5.8886 -2.6410 0.1887 25 6 2.0699 -0.7790 1.2170 26 1 -0.3634 0.4726 0.9125 27 1 -0.3634 0.5540 -0.8656 28 1 -0.3634 -1.0266 -0.0469 29 1 1.4580 -1.6600 -1.4225 30 1 2.1220 -0.1389 -2.1010 31 1 4.1907 -0.3723 -0.8835 32 1 3.8318 -2.0738 -1.3144 33 1 6.6299 -0.5351 2.7993 34 1 7.6117 -0.6772 1.3184 35 1 8.5530 -2.1463 3.0396 36 1 6.9653 -2.9082 3.3008 37 1 8.5382 -2.9516 0.6849 38 1 9.5192 -4.3345 2.5381 39 1 7.9610 -5.1825 2.6843 40 1 10.4989 -8.3788 0.3485 41 1 5.9479 -4.3215 1.5391 42 1 6.7948 -4.5883 -0.0039 43 1 4.9064 -2.9290 -0.1861 44 1 6.4888 -2.2370 -0.6266 45 1 1.3176 -1.4824 1.5739 46 1 2.3412 -0.0860 2.0135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335500912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:13 Heat of formation + Delta-G solvation = -71.047440 kcal Electronic energy + Delta-G solvation = -22625.579503 eV Core-core repulsion = 19513.401929 eV Total energy + Delta-G solvation = -3112.177574 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51938 -38.19308 -37.04114 -34.12816 -32.42202 -31.70560 -30.53508 -29.05953 -28.51681 -25.72755 -24.54649 -22.87144 -22.15448 -20.78673 -20.25944 -19.48143 -18.52576 -17.35498 -16.72551 -15.91903 -15.57944 -15.01935 -14.56493 -14.27976 -13.96687 -13.77125 -13.63178 -13.34014 -13.30592 -13.02648 -12.77676 -12.33342 -12.18638 -12.03121 -11.78063 -11.47459 -11.38835 -11.16848 -11.00102 -10.95355 -10.81671 -10.78765 -10.67441 -10.57053 -10.31458 -9.89155 -9.76645 -9.54543 -9.45604 -9.08052 -8.55833 -8.39816 -6.06822 -4.04230 2.73448 3.13951 3.28841 3.36877 3.40555 4.31862 4.35455 4.43360 4.52414 4.79204 5.04401 5.09025 5.17825 5.26463 5.27339 5.31027 5.37197 5.39025 5.42790 5.45914 5.47676 5.60394 5.62217 5.67033 5.72334 5.81649 5.85581 5.91794 5.96621 6.00462 6.03375 6.20552 6.25643 6.27701 6.31741 6.42025 6.62750 6.78414 6.83827 6.95122 7.24908 7.40633 7.57639 7.77664 8.29348 8.50978 8.97540 9.56507 11.06379 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.030631 B = 0.003617 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.899484 B = 7740.084201 C = 8167.299132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.113 4.113 7 H 0.098 0.902 8 C 0.519 3.481 9 O -0.552 6.552 10 N -0.604 5.604 11 C 0.112 3.888 12 C -0.132 4.132 13 C -0.072 4.072 14 C -0.009 4.009 15 C -0.516 4.516 16 H 0.073 0.927 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.121 4.121 24 C 0.100 3.900 25 C -0.114 4.114 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.016 0.984 39 H 0.010 0.990 40 H 0.262 0.738 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.555 13.500 -1.475 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.157 4.157 5 C -0.154 4.154 6 C -0.134 4.134 7 H 0.116 0.884 8 C 0.307 3.693 9 O -0.431 6.431 10 N -0.336 5.336 11 C -0.010 4.010 12 C -0.170 4.170 13 C -0.090 4.090 14 C -0.047 4.047 15 C -0.554 4.554 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.159 4.159 24 C -0.023 4.023 25 C -0.152 4.152 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.034 0.966 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.508 13.768 -1.050 20.764 hybrid contribution 0.465 -0.614 0.868 1.160 sum -15.043 13.154 -0.182 19.984 Atomic orbital electron populations 1.21793 0.95012 1.01739 1.01510 1.21971 0.95385 0.99447 0.94771 0.90847 1.22603 0.95654 0.99928 0.97516 1.22489 0.97877 1.01877 0.93131 1.21911 0.93708 1.01932 0.95867 0.88406 1.20570 0.84367 0.81138 0.83182 1.90617 1.85262 1.33629 1.33581 1.48140 1.07477 1.40861 1.37161 1.21633 0.85966 0.97242 0.96192 1.22056 1.00099 0.95750 0.99101 1.21000 0.95770 0.96285 0.95991 1.19620 0.95023 0.93137 0.96887 1.21131 1.36572 1.03576 0.94091 0.90848 1.25026 0.95352 0.96314 0.96822 1.69912 1.40768 1.12253 1.31401 0.86810 0.77964 0.78759 0.85929 1.20404 1.21480 1.19070 1.21931 0.96552 0.96029 1.01432 1.22102 1.01519 0.88980 0.89656 1.22235 0.94855 0.99355 0.98717 0.92714 0.92824 0.92600 0.91136 0.91450 0.91188 0.90355 0.89707 0.91809 0.91186 0.92144 0.91744 0.96614 0.97155 0.92792 0.92393 0.89188 0.89824 0.91409 0.91472 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.12 37.16 0.34 -0.73 16 2 C -0.10 -0.87 3.46 -88.96 -0.31 -1.17 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.12 -0.97 6.33 -24.69 -0.16 -1.13 16 5 C -0.12 -1.09 5.13 -25.03 -0.13 -1.22 16 6 C -0.11 -1.26 2.41 -90.65 -0.22 -1.48 16 7 H 0.10 1.02 7.67 -51.93 -0.40 0.62 16 8 C 0.52 7.53 6.94 -10.99 -0.08 7.46 16 9 O -0.55 -9.69 14.62 5.56 0.08 -9.61 16 10 N -0.60 -8.58 2.97 -172.75 -0.51 -9.09 16 11 C 0.11 1.63 6.43 -3.71 -0.02 1.60 16 12 C -0.13 -2.10 5.36 -26.62 -0.14 -2.24 16 13 C -0.07 -1.32 2.10 -90.58 -0.19 -1.51 16 14 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 15 C -0.52 -13.97 8.94 -34.44 -0.31 -14.27 16 16 H 0.07 2.11 7.30 -52.49 -0.38 1.72 16 17 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 18 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 19 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 23 C -0.12 -2.01 5.19 -26.60 -0.14 -2.15 16 24 C 0.10 1.31 5.62 -3.70 -0.02 1.29 16 25 C -0.11 -1.21 5.97 -25.62 -0.15 -1.36 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.07 0.53 8.04 -51.93 -0.42 0.11 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 32 H 0.08 0.66 6.65 -51.93 -0.35 0.31 16 33 H 0.08 1.28 7.00 -51.93 -0.36 0.92 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 39 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 1.65 6.91 -51.93 -0.36 1.29 16 43 H 0.08 0.92 4.31 -51.93 -0.22 0.70 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.64 7.84 -51.93 -0.41 0.24 16 46 H 0.09 1.14 6.39 -51.92 -0.33 0.81 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -30.80 344.35 -9.08 -39.88 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.22 Total: -1.23 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -1.72 Total: -15.45 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.26 Total: -35.58 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.80 -9.08 -39.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.166 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds