Wall clock time and date at job start Fri Apr 10 2020 17:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.54058 * 2 1 4 4 C 1.54899 * 110.48300 * 237.39321 * 2 1 3 5 5 C 1.54967 * 102.77508 * 203.40621 * 4 2 1 6 6 C 1.54269 * 104.16061 * 37.88607 * 5 4 2 7 7 H 1.08999 * 110.02619 * 95.75455 * 6 5 4 8 8 C 1.50698 * 110.03403 * 217.13597 * 6 5 4 9 9 O 1.21280 * 119.99912 * 117.90932 * 8 6 5 10 10 N 1.34777 * 119.99915 * 297.91050 * 8 6 5 11 11 C 1.46928 * 120.63052 * 179.97438 * 10 8 6 12 12 C 1.53187 * 108.77623 * 126.36901 * 11 10 8 13 13 C 1.53036 * 109.33909 * 54.61900 * 12 11 10 14 14 C 1.52999 * 109.46209 * 178.63045 * 13 12 11 15 15 C 1.50708 * 109.47341 * 185.00160 * 14 13 12 16 16 H 1.07993 * 119.99846 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99603 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99389 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00547 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47056 * 89.99629 * 19 17 15 21 21 H 1.48504 * 109.47148 * 210.00126 * 19 17 15 22 22 H 1.48503 * 109.46903 * 330.00062 * 19 17 15 23 23 C 1.53042 * 109.54058 * 298.68652 * 13 12 11 24 24 C 1.46927 * 120.63332 * 359.97438 * 10 8 6 25 25 C 1.53875 * 106.63784 * 336.44859 * 6 5 4 26 26 H 1.08995 * 109.47423 * 297.38383 * 1 2 3 27 27 H 1.09005 * 109.47374 * 57.38256 * 1 2 3 28 28 H 1.09003 * 109.47210 * 177.38199 * 1 2 3 29 29 H 1.08995 * 110.75911 * 321.69267 * 4 2 1 30 30 H 1.09001 * 110.75517 * 84.88079 * 4 2 1 31 31 H 1.09002 * 110.47594 * 279.23560 * 5 4 2 32 32 H 1.08998 * 110.53077 * 156.57096 * 5 4 2 33 33 H 1.09000 * 109.58414 * 6.58067 * 11 10 8 34 34 H 1.08999 * 109.58551 * 246.15992 * 11 10 8 35 35 H 1.09002 * 109.49796 * 174.58834 * 12 11 10 36 36 H 1.09000 * 109.49812 * 294.65558 * 12 11 10 37 37 H 1.08998 * 109.46343 * 58.67009 * 13 12 11 38 38 H 1.09000 * 109.47164 * 304.99969 * 14 13 12 39 39 H 1.09003 * 109.47042 * 65.00149 * 14 13 12 40 40 H 0.96998 * 119.99936 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.46473 * 301.36154 * 23 13 12 42 42 H 1.09000 * 109.52301 * 181.30261 * 23 13 12 43 43 H 1.08999 * 109.58621 * 353.42243 * 24 10 8 44 44 H 1.09005 * 109.58884 * 113.83819 * 24 10 8 45 45 H 1.08999 * 110.03155 * 119.26475 * 25 6 5 46 46 H 1.09007 * 110.02905 * 240.68470 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0206 0.0000 4 6 2.0720 -0.7819 -1.2224 5 6 3.4912 -1.1991 -0.7604 6 6 3.3165 -1.5406 0.7338 7 1 3.1695 -2.6137 0.8568 8 6 4.5280 -1.0936 1.5106 9 8 4.4155 -0.2558 2.3803 10 7 5.7365 -1.6248 1.2389 11 6 6.9270 -1.1987 1.9872 12 6 7.6170 -2.4389 2.5638 13 6 7.9063 -3.4293 1.4336 14 6 8.6261 -4.6543 2.0012 15 6 9.0202 -5.5728 0.8732 16 1 8.7807 -5.3094 -0.1464 17 6 9.6864 -6.7494 1.1431 18 7 10.0299 -7.5512 0.1588 19 14 10.1000 -7.2053 2.9067 20 1 8.9842 -7.9936 3.4888 21 1 11.3438 -8.0163 2.9296 22 1 10.3007 -5.9684 3.7036 23 6 6.5901 -3.8653 0.7857 24 6 5.8886 -2.6410 0.1887 25 6 2.0699 -0.7790 1.2170 26 1 -0.3634 0.4726 0.9125 27 1 -0.3634 0.5540 -0.8656 28 1 -0.3634 -1.0266 -0.0469 29 1 1.4580 -1.6600 -1.4225 30 1 2.1220 -0.1389 -2.1010 31 1 4.1907 -0.3723 -0.8835 32 1 3.8318 -2.0738 -1.3144 33 1 6.6299 -0.5351 2.7993 34 1 7.6117 -0.6772 1.3184 35 1 8.5530 -2.1463 3.0396 36 1 6.9653 -2.9082 3.3008 37 1 8.5382 -2.9516 0.6849 38 1 9.5192 -4.3345 2.5381 39 1 7.9610 -5.1825 2.6843 40 1 10.4989 -8.3788 0.3485 41 1 5.9479 -4.3215 1.5391 42 1 6.7948 -4.5883 -0.0039 43 1 4.9064 -2.9290 -0.1861 44 1 6.4888 -2.2370 -0.6266 45 1 1.3176 -1.4824 1.5739 46 1 2.3412 -0.0860 2.0135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335500912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:13 Heat of formation + Delta-G solvation = -87.485706 kcal Electronic energy + Delta-G solvation = -22626.292320 eV Core-core repulsion = 19513.401929 eV Total energy + Delta-G solvation = -3112.890390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.60442 -39.25978 -38.16336 -35.71448 -34.15920 -32.83053 -31.60320 -30.30870 -29.73365 -26.78875 -25.81730 -24.12516 -23.51937 -21.97813 -21.18833 -20.68743 -19.63089 -18.85886 -18.35188 -17.01039 -16.59048 -16.38392 -15.87900 -15.53178 -15.22297 -15.00225 -14.83289 -14.54938 -14.47655 -14.16953 -14.02997 -13.75761 -13.50833 -13.10596 -12.90599 -12.74650 -12.61788 -12.41759 -12.21994 -12.10797 -11.97897 -11.75097 -11.66490 -11.64601 -11.47922 -11.40151 -11.34240 -11.05542 -10.92835 -10.72437 -10.64866 -9.61534 -8.25338 -6.26537 1.35171 1.37496 1.48111 1.61640 2.03622 2.37595 3.10413 3.43544 3.59447 3.72323 3.86072 3.98870 4.03770 4.13945 4.21818 4.35639 4.38404 4.42853 4.53635 4.56558 4.61314 4.65479 4.73037 4.76011 4.80983 4.86762 4.93036 4.98626 5.05847 5.06627 5.12300 5.15837 5.17538 5.24713 5.28005 5.35527 5.37421 5.39805 5.47284 5.57910 5.62834 5.72610 5.74442 6.34480 6.44994 6.80857 7.16375 7.37387 8.90756 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.030631 B = 0.003617 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.899484 B = 7740.084201 C = 8167.299132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.062 0.938 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.112 4.112 7 H 0.110 0.890 8 C 0.515 3.485 9 O -0.587 6.587 10 N -0.605 5.605 11 C 0.115 3.885 12 C -0.122 4.122 13 C -0.069 4.069 14 C -0.007 4.007 15 C -0.514 4.514 16 H 0.044 0.956 17 C 0.005 3.995 18 N -0.951 5.951 19 Si 0.940 3.060 20 H -0.271 1.271 21 H -0.287 1.287 22 H -0.251 1.251 23 C -0.117 4.117 24 C 0.109 3.891 25 C -0.114 4.114 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.014 0.986 39 H 0.010 0.990 40 H 0.264 0.736 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.815 14.115 -1.317 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.081 0.919 4 C -0.151 4.151 5 C -0.152 4.152 6 C -0.133 4.133 7 H 0.128 0.872 8 C 0.305 3.695 9 O -0.468 6.468 10 N -0.337 5.337 11 C -0.008 4.008 12 C -0.160 4.160 13 C -0.088 4.088 14 C -0.045 4.045 15 C -0.552 4.552 16 H 0.063 0.937 17 C -0.191 4.191 18 N -0.592 5.592 19 Si 0.765 3.235 20 H -0.196 1.196 21 H -0.213 1.213 22 H -0.175 1.175 23 C -0.156 4.156 24 C -0.012 4.012 25 C -0.151 4.151 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.128 0.872 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.775 14.395 -0.897 22.123 hybrid contribution 0.862 -0.783 0.779 1.401 sum -15.913 13.612 -0.118 20.941 Atomic orbital electron populations 1.21771 0.93779 1.02353 1.01869 1.21956 0.96406 0.98723 0.94409 0.91937 1.22596 0.94747 1.00432 0.97297 1.22508 0.98681 1.02179 0.91811 1.22002 0.92158 1.02516 0.96586 0.87182 1.21177 0.85077 0.80473 0.82794 1.90605 1.85788 1.35239 1.35178 1.48220 1.07451 1.40835 1.37197 1.21576 0.86315 0.96429 0.96475 1.21934 1.00613 0.95544 0.97929 1.20917 0.96162 0.95012 0.96709 1.19585 0.95345 0.94124 0.95430 1.21450 1.35467 1.04072 0.94211 0.93749 1.25899 0.95662 0.96535 1.01051 1.70052 1.42376 1.13023 1.33757 0.85804 0.77803 0.78988 0.80914 1.19633 1.21345 1.17463 1.21823 0.95942 0.97183 1.00615 1.22081 1.02771 0.87186 0.89203 1.22222 0.95019 0.99174 0.98732 0.92992 0.91839 0.91890 0.89876 0.90395 0.92120 0.88884 0.90188 0.90484 0.90304 0.92774 0.92222 0.96772 0.97153 0.92756 0.92820 0.91347 0.87167 0.90291 0.90430 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.12 71.98 0.66 -1.13 16 2 C -0.10 -1.54 3.46 -9.72 -0.03 -1.58 16 3 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.11 -1.52 6.33 31.92 0.20 -1.31 16 5 C -0.11 -1.84 5.13 31.70 0.16 -1.68 16 6 C -0.11 -2.27 2.41 -10.82 -0.03 -2.30 16 7 H 0.11 1.99 7.67 -2.39 -0.02 1.97 16 8 C 0.51 14.31 6.94 87.66 0.61 14.92 16 9 O -0.59 -20.45 14.62 -3.03 -0.04 -20.49 16 10 N -0.61 -16.20 2.97 -818.86 -2.43 -18.63 16 11 C 0.11 3.16 6.43 86.36 0.56 3.72 16 12 C -0.12 -3.71 5.36 30.67 0.16 -3.54 16 13 C -0.07 -2.49 2.10 -10.77 -0.02 -2.51 16 14 C -0.01 -0.34 3.52 29.85 0.11 -0.23 16 15 C -0.51 -28.15 8.94 25.60 0.23 -27.92 16 16 H 0.04 2.62 7.30 -2.91 -0.02 2.60 16 17 C 0.00 0.28 5.47 84.65 0.46 0.75 16 18 N -0.95 -58.42 13.96 21.45 0.30 -58.12 16 19 Si 0.94 44.02 27.47 68.60 1.88 45.91 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 23 C -0.12 -3.79 5.19 30.68 0.16 -3.63 16 24 C 0.11 2.66 5.62 86.37 0.49 3.14 16 25 C -0.11 -2.27 5.97 31.32 0.19 -2.08 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.06 0.72 8.12 -2.39 -0.02 0.70 16 29 H 0.08 0.94 8.04 -2.39 -0.02 0.92 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.11 7.85 -2.39 -0.02 1.09 16 32 H 0.09 1.23 6.65 -2.39 -0.02 1.22 16 33 H 0.08 2.33 7.00 -2.39 -0.02 2.31 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.01 0.63 7.20 -2.39 -0.02 0.62 16 39 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 40 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 2.51 6.91 -2.39 -0.02 2.50 16 43 H 0.11 2.10 4.31 -2.39 -0.01 2.09 16 44 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 45 H 0.08 1.36 7.84 -2.39 -0.02 1.34 16 46 H 0.06 1.58 6.39 -2.38 -0.02 1.57 16 Total: -1.00 -67.06 344.35 4.48 -62.59 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.87 Total: 14.14 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 3.90 Total: -25.39 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -2.13 Total: -76.75 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.04 Total: -20.49 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.91 kcal Total: -67.06 4.48 -62.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.899 kcal (2) G-P(sol) polarization free energy of solvation -67.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds