Wall clock time and date at job start Fri Apr 10 2020 17:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46852 * 2 1 4 4 C 1.52997 * 109.47072 * 119.99908 * 2 1 3 5 5 C 1.53003 * 109.47072 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.46786 * 299.99959 * 5 4 2 7 7 C 1.52997 * 109.47282 * 60.00170 * 6 5 4 8 8 C 1.53003 * 109.47072 * 299.99655 * 7 6 5 9 9 H 1.08998 * 109.47062 * 300.00642 * 8 7 6 10 10 C 1.50694 * 109.47329 * 180.02562 * 8 7 6 11 11 O 1.21290 * 119.99963 * 266.94753 * 10 8 7 12 12 N 1.34772 * 120.00313 * 86.95013 * 10 8 7 13 13 C 1.46922 * 120.63730 * 174.75242 * 12 10 8 14 14 C 1.53187 * 108.77894 * 233.58691 * 13 12 10 15 15 C 1.53042 * 109.31493 * 305.36423 * 14 13 12 16 16 C 1.50699 * 109.46106 * 181.38251 * 15 14 13 17 17 H 1.08001 * 120.00110 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99556 * 179.72212 * 16 15 14 19 19 N 1.31513 * 120.00245 * 0.27761 * 18 16 15 20 20 Si 1.86805 * 119.99709 * 180.27475 * 18 16 15 21 21 H 1.48509 * 109.46980 * 90.00270 * 20 18 16 22 22 H 1.48501 * 109.47031 * 210.00029 * 20 18 16 23 23 H 1.48500 * 109.47366 * 330.00360 * 20 18 16 24 24 C 1.53043 * 109.53624 * 61.35978 * 15 14 13 25 25 C 1.46933 * 120.62533 * 354.72963 * 12 10 8 26 26 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46925 * 299.99915 * 1 2 3 28 28 H 1.08997 * 109.47706 * 59.99826 * 1 2 3 29 29 H 1.08997 * 109.47051 * 299.99615 * 4 2 1 30 30 H 1.08993 * 109.47350 * 60.00049 * 4 2 1 31 31 H 1.09007 * 109.46920 * 59.99619 * 5 4 2 32 32 H 1.08991 * 109.47304 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.46519 * 179.97438 * 6 5 4 34 34 H 1.08993 * 109.47249 * 299.99715 * 6 5 4 35 35 H 1.08997 * 109.47051 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47207 * 59.99346 * 7 6 5 37 37 H 1.09000 * 109.58888 * 113.79534 * 13 12 10 38 38 H 1.09002 * 109.58418 * 353.37188 * 13 12 10 39 39 H 1.09003 * 109.50213 * 185.40957 * 14 13 12 40 40 H 1.09007 * 109.52521 * 65.33135 * 14 13 12 41 41 H 1.08992 * 109.45463 * 301.35761 * 15 14 13 42 42 H 0.97002 * 120.00073 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.49390 * 58.59346 * 24 15 14 44 44 H 1.08994 * 109.49244 * 178.68380 * 24 15 14 45 45 H 1.09001 * 109.58721 * 246.19647 * 25 12 10 46 46 H 1.08991 * 109.58952 * 6.48676 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0003 7 6 3.5705 -0.7204 -1.2490 8 6 2.0405 -0.7209 -1.2493 9 1 1.6775 -1.7487 -1.2494 10 6 1.5381 -0.0111 -2.4800 11 8 1.2828 1.1737 -2.4350 12 7 1.3725 -0.6928 -3.6307 13 6 0.7764 -0.0438 -4.8063 14 6 -0.4005 -0.8939 -5.2952 15 6 0.0783 -2.3262 -5.5433 16 6 -1.0692 -3.1573 -6.0568 17 1 -2.0424 -2.7091 -6.1922 18 6 -0.8752 -4.4885 -6.3586 19 7 0.3098 -5.0344 -6.1932 20 14 -2.2957 -5.5168 -7.0024 21 1 -2.3289 -5.4418 -8.4852 22 1 -2.1144 -6.9295 -6.5821 23 1 -3.5729 -4.9966 -6.4517 24 6 0.5970 -2.9264 -4.2345 25 6 1.7852 -2.0993 -3.7336 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6767 -0.2073 2.1392 30 1 1.6767 -1.7488 1.2493 31 1 3.9330 0.3072 1.2497 32 1 3.9334 -1.2340 2.1397 33 1 5.1705 -1.4408 0.0003 34 1 3.7176 -2.4693 0.0001 35 1 3.9338 -1.2343 -2.1389 36 1 3.9334 0.3074 -1.2487 37 1 1.5224 0.0366 -5.5970 38 1 0.4210 0.9500 -4.5340 39 1 -0.7914 -0.4752 -6.2226 40 1 -1.1855 -0.8986 -4.5389 41 1 0.8799 -2.3182 -6.2817 42 1 0.4462 -5.9711 -6.4052 43 1 -0.1970 -2.9118 -3.4879 44 1 0.9160 -3.9542 -4.4070 45 1 2.6134 -2.1866 -4.4368 46 1 2.0977 -2.4610 -2.7541 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335600761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:18 Heat of formation + Delta-G solvation = -75.755155 kcal Electronic energy + Delta-G solvation = -23363.157745 eV Core-core repulsion = 20250.776029 eV Total energy + Delta-G solvation = -3112.381716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.33476 -38.02837 -36.57414 -33.53621 -32.52643 -31.79763 -30.60776 -29.89790 -26.74173 -25.99765 -23.79149 -22.57537 -22.26242 -21.31954 -20.24218 -19.30998 -18.22477 -16.93313 -16.13497 -15.68169 -14.96052 -14.62922 -14.55418 -14.40204 -14.14724 -13.65283 -13.30342 -13.08578 -12.83980 -12.61622 -12.51534 -12.33837 -12.02109 -11.87975 -11.59573 -11.49341 -11.28864 -11.21927 -10.96211 -10.87931 -10.64793 -10.47380 -10.45154 -10.31629 -10.10026 -10.06569 -9.64322 -9.19955 -9.17563 -8.88528 -8.39110 -7.96211 -6.04660 -4.10742 3.04079 3.27056 3.34192 3.37742 3.51998 4.39630 4.59749 4.64137 4.71634 5.07422 5.10725 5.18202 5.24862 5.35402 5.40540 5.46352 5.49962 5.65507 5.71486 5.76102 5.82936 5.91734 5.95016 5.96973 6.02244 6.05247 6.10010 6.12405 6.16304 6.21387 6.22978 6.35010 6.43041 6.46691 6.51961 6.66354 6.90356 7.04101 7.15629 7.27517 7.65354 7.90686 7.98065 8.03127 8.38917 8.63814 8.92726 9.54510 11.00861 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023811 B = 0.004497 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.631686 B = 6225.524397 C = 6526.183701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.071 4.071 3 H 0.078 0.922 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.108 4.108 8 C -0.103 4.103 9 H 0.093 0.907 10 C 0.518 3.482 11 O -0.559 6.559 12 N -0.600 5.600 13 C 0.111 3.889 14 C -0.123 4.123 15 C 0.049 3.951 16 C -0.512 4.512 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.124 4.124 25 C 0.101 3.899 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.027 0.973 42 H 0.260 0.740 43 H 0.038 0.962 44 H 0.104 0.896 45 H 0.061 0.939 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.666 5.831 12.342 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.090 4.090 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.146 4.146 8 C -0.124 4.124 9 H 0.111 0.889 10 C 0.306 3.694 11 O -0.439 6.439 12 N -0.332 5.332 13 C -0.011 4.011 14 C -0.161 4.161 15 C 0.030 3.970 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.162 4.162 25 C -0.021 4.021 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.616 6.267 12.320 15.324 hybrid contribution -0.788 -0.819 -0.506 1.244 sum 5.828 5.448 11.813 14.255 Atomic orbital electron populations 1.21873 0.95029 1.01650 1.02250 1.20921 0.95785 0.99771 0.92477 0.90353 1.21615 0.95350 1.00799 0.97405 1.21552 0.95838 1.00730 0.97644 1.21525 1.00173 0.99553 0.94210 1.21476 0.93038 1.01521 0.98572 1.21411 0.96916 1.00915 0.93178 0.88863 1.20518 0.77511 0.87059 0.84282 1.90611 1.52736 1.15604 1.84954 1.48261 1.60215 1.13012 1.11687 1.21672 0.96035 0.96841 0.86521 1.22004 0.95999 0.98335 0.99765 1.18627 0.96193 0.89140 0.93004 1.21210 0.96222 0.94742 1.42828 0.92728 1.24949 0.95582 0.97890 0.95474 1.69835 1.21514 1.12911 1.48851 0.86628 0.82856 0.79520 0.79201 1.20710 1.21245 1.19977 1.22015 0.94385 1.01669 0.98173 1.22086 0.99322 0.79939 1.00740 0.92943 0.92885 0.91788 0.91895 0.91849 0.92029 0.92125 0.91812 0.91646 0.91349 0.91476 0.92389 0.90505 0.92227 0.93031 0.95507 0.92987 0.94280 0.87831 0.92046 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.91 37.16 0.33 -1.69 16 2 C -0.07 -0.90 1.89 -90.62 -0.17 -1.07 16 3 H 0.08 1.09 7.86 -51.93 -0.41 0.68 16 4 C -0.11 -1.16 5.20 -26.73 -0.14 -1.30 16 5 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 6 C -0.12 -1.14 5.92 -26.73 -0.16 -1.29 16 7 C -0.11 -1.29 5.04 -26.73 -0.13 -1.42 16 8 C -0.10 -1.42 1.20 -91.77 -0.11 -1.53 16 9 H 0.09 1.28 6.38 -51.93 -0.33 0.95 16 10 C 0.52 9.00 5.93 -10.99 -0.07 8.94 16 11 O -0.56 -11.16 14.59 5.55 0.08 -11.07 16 12 N -0.60 -10.82 2.97 -172.77 -0.51 -11.33 16 13 C 0.11 2.07 6.42 -3.72 -0.02 2.05 16 14 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 15 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 16 C -0.51 -13.58 8.56 -34.44 -0.29 -13.88 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 19 N -0.89 -24.27 11.31 55.43 0.63 -23.64 16 20 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.12 -2.70 5.16 -26.61 -0.14 -2.84 16 25 C 0.10 1.80 5.97 -3.71 -0.02 1.77 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 1.02 6.53 -51.93 -0.34 0.68 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.82 7.57 -51.93 -0.39 0.43 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.43 7.04 -51.93 -0.37 1.06 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.10 2.51 6.04 -51.93 -0.31 2.19 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.07 1.07 5.15 -51.93 -0.27 0.80 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -28.20 343.27 -9.46 -37.67 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.30 Total: 1.14 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -1.51 Total: -13.67 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.11 Total: -34.97 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.20 -9.46 -37.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335600761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.089 kcal (2) G-P(sol) polarization free energy of solvation -28.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds