Wall clock time and date at job start Fri Apr 10 2020 17:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46852 * 2 1 4 4 C 1.52997 * 109.47072 * 119.99908 * 2 1 3 5 5 C 1.53003 * 109.47072 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.46786 * 299.99959 * 5 4 2 7 7 C 1.52997 * 109.47282 * 60.00170 * 6 5 4 8 8 C 1.53003 * 109.47072 * 299.99655 * 7 6 5 9 9 H 1.08998 * 109.47062 * 300.00642 * 8 7 6 10 10 C 1.50694 * 109.47329 * 180.02562 * 8 7 6 11 11 O 1.21290 * 119.99963 * 266.94753 * 10 8 7 12 12 N 1.34772 * 120.00313 * 86.95013 * 10 8 7 13 13 C 1.46922 * 120.63730 * 174.75242 * 12 10 8 14 14 C 1.53187 * 108.77894 * 233.58691 * 13 12 10 15 15 C 1.53042 * 109.31493 * 305.36423 * 14 13 12 16 16 C 1.50699 * 109.46106 * 181.38251 * 15 14 13 17 17 H 1.08001 * 120.00110 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99556 * 179.72212 * 16 15 14 19 19 N 1.31513 * 120.00245 * 0.27761 * 18 16 15 20 20 Si 1.86805 * 119.99709 * 180.27475 * 18 16 15 21 21 H 1.48509 * 109.46980 * 90.00270 * 20 18 16 22 22 H 1.48501 * 109.47031 * 210.00029 * 20 18 16 23 23 H 1.48500 * 109.47366 * 330.00360 * 20 18 16 24 24 C 1.53043 * 109.53624 * 61.35978 * 15 14 13 25 25 C 1.46933 * 120.62533 * 354.72963 * 12 10 8 26 26 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46925 * 299.99915 * 1 2 3 28 28 H 1.08997 * 109.47706 * 59.99826 * 1 2 3 29 29 H 1.08997 * 109.47051 * 299.99615 * 4 2 1 30 30 H 1.08993 * 109.47350 * 60.00049 * 4 2 1 31 31 H 1.09007 * 109.46920 * 59.99619 * 5 4 2 32 32 H 1.08991 * 109.47304 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.46519 * 179.97438 * 6 5 4 34 34 H 1.08993 * 109.47249 * 299.99715 * 6 5 4 35 35 H 1.08997 * 109.47051 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47207 * 59.99346 * 7 6 5 37 37 H 1.09000 * 109.58888 * 113.79534 * 13 12 10 38 38 H 1.09002 * 109.58418 * 353.37188 * 13 12 10 39 39 H 1.09003 * 109.50213 * 185.40957 * 14 13 12 40 40 H 1.09007 * 109.52521 * 65.33135 * 14 13 12 41 41 H 1.08992 * 109.45463 * 301.35761 * 15 14 13 42 42 H 0.97002 * 120.00073 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.49390 * 58.59346 * 24 15 14 44 44 H 1.08994 * 109.49244 * 178.68380 * 24 15 14 45 45 H 1.09001 * 109.58721 * 246.19647 * 25 12 10 46 46 H 1.08991 * 109.58952 * 6.48676 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0003 7 6 3.5705 -0.7204 -1.2490 8 6 2.0405 -0.7209 -1.2493 9 1 1.6775 -1.7487 -1.2494 10 6 1.5381 -0.0111 -2.4800 11 8 1.2828 1.1737 -2.4350 12 7 1.3725 -0.6928 -3.6307 13 6 0.7764 -0.0438 -4.8063 14 6 -0.4005 -0.8939 -5.2952 15 6 0.0783 -2.3262 -5.5433 16 6 -1.0692 -3.1573 -6.0568 17 1 -2.0424 -2.7091 -6.1922 18 6 -0.8752 -4.4885 -6.3586 19 7 0.3098 -5.0344 -6.1932 20 14 -2.2957 -5.5168 -7.0024 21 1 -2.3289 -5.4418 -8.4852 22 1 -2.1144 -6.9295 -6.5821 23 1 -3.5729 -4.9966 -6.4517 24 6 0.5970 -2.9264 -4.2345 25 6 1.7852 -2.0993 -3.7336 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6767 -0.2073 2.1392 30 1 1.6767 -1.7488 1.2493 31 1 3.9330 0.3072 1.2497 32 1 3.9334 -1.2340 2.1397 33 1 5.1705 -1.4408 0.0003 34 1 3.7176 -2.4693 0.0001 35 1 3.9338 -1.2343 -2.1389 36 1 3.9334 0.3074 -1.2487 37 1 1.5224 0.0366 -5.5970 38 1 0.4210 0.9500 -4.5340 39 1 -0.7914 -0.4752 -6.2226 40 1 -1.1855 -0.8986 -4.5389 41 1 0.8799 -2.3182 -6.2817 42 1 0.4462 -5.9711 -6.4052 43 1 -0.1970 -2.9118 -3.4879 44 1 0.9160 -3.9542 -4.4070 45 1 2.6134 -2.1866 -4.4368 46 1 2.0977 -2.4610 -2.7541 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335600761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:17 Heat of formation + Delta-G solvation = -89.088360 kcal Electronic energy + Delta-G solvation = -23363.735916 eV Core-core repulsion = 20250.776029 eV Total energy + Delta-G solvation = -3112.959887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.63795 -39.26501 -38.05802 -35.34442 -33.47653 -33.32891 -32.08351 -31.32113 -28.19016 -27.36415 -25.19635 -24.11177 -23.66522 -22.34314 -21.48197 -20.58119 -19.68641 -18.60177 -17.88543 -17.00725 -16.49972 -16.25764 -15.65834 -15.40761 -15.15080 -14.93228 -14.87108 -14.65178 -14.32599 -14.20790 -13.68419 -13.56042 -13.32467 -13.19058 -13.04378 -12.83791 -12.72328 -12.45849 -12.44974 -12.20744 -12.09755 -11.97363 -11.75488 -11.49843 -11.39833 -11.31285 -11.02338 -10.96801 -10.86618 -10.47280 -10.34824 -9.52807 -8.08099 -6.21318 1.41163 1.43406 1.52191 1.66148 2.11559 2.44049 3.18534 3.48914 3.66495 3.79598 3.99241 4.15702 4.23090 4.23471 4.31775 4.36104 4.45471 4.47563 4.50882 4.55110 4.58420 4.60204 4.71574 4.75919 4.85183 4.89589 4.96990 5.00843 5.06669 5.16947 5.18934 5.20133 5.25173 5.33045 5.35835 5.37274 5.41519 5.44458 5.56057 5.61378 5.66092 5.97979 6.13027 6.38912 6.54743 6.87769 7.22363 7.46479 8.95440 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023811 B = 0.004497 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.631686 B = 6225.524397 C = 6526.183701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.068 4.068 3 H 0.064 0.936 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.106 4.106 8 C -0.099 4.099 9 H 0.097 0.903 10 C 0.515 3.485 11 O -0.587 6.587 12 N -0.605 5.605 13 C 0.116 3.884 14 C -0.112 4.112 15 C 0.046 3.954 16 C -0.536 4.536 17 H 0.046 0.954 18 C 0.020 3.980 19 N -0.911 5.911 20 Si 0.948 3.052 21 H -0.278 1.278 22 H -0.281 1.281 23 H -0.274 1.274 24 C -0.114 4.114 25 C 0.114 3.886 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.003 0.997 42 H 0.262 0.738 43 H 0.028 0.972 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.448 5.315 13.924 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 H 0.082 0.918 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.144 4.144 8 C -0.120 4.120 9 H 0.115 0.885 10 C 0.306 3.694 11 O -0.468 6.468 12 N -0.337 5.337 13 C -0.006 4.006 14 C -0.150 4.150 15 C 0.028 3.972 16 C -0.574 4.574 17 H 0.064 0.936 18 C -0.179 4.179 19 N -0.550 5.550 20 Si 0.774 3.226 21 H -0.204 1.204 22 H -0.206 1.206 23 H -0.199 1.199 24 C -0.153 4.153 25 C -0.008 4.008 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.021 0.979 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.404 5.752 13.907 16.772 hybrid contribution -1.065 -0.619 -1.031 1.606 sum 6.339 5.133 12.876 15.242 Atomic orbital electron populations 1.21854 0.95748 1.01557 1.01470 1.20920 0.95155 0.99299 0.93351 0.91751 1.21591 0.96165 1.00739 0.96168 1.21560 0.94912 1.00943 0.98179 1.21529 1.01093 0.99430 0.93042 1.21491 0.91297 1.01561 1.00020 1.21481 0.98356 1.00509 0.91654 0.88472 1.21206 0.76582 0.86853 0.84798 1.90595 1.53823 1.17017 1.85356 1.48323 1.60375 1.13065 1.11890 1.21552 0.95509 0.96355 0.87217 1.21845 0.96490 0.97034 0.99676 1.18598 0.94748 0.90670 0.93232 1.21533 0.96723 0.95617 1.43549 0.93590 1.25604 0.97770 0.98842 0.95678 1.69940 1.22800 1.13155 1.49135 0.85721 0.80138 0.78144 0.78613 1.20364 1.20650 1.19866 1.21782 0.95531 1.00987 0.96986 1.21946 0.97405 0.79189 1.02287 0.92635 0.91216 0.95007 0.90663 0.91339 0.92131 0.90186 0.90301 0.91106 0.91413 0.92186 0.91487 0.90465 0.91939 0.94087 0.97920 0.92868 0.95331 0.90123 0.91673 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 8.91 71.98 0.64 -3.22 16 2 C -0.07 -1.64 1.89 -10.79 -0.02 -1.66 16 3 H 0.06 1.73 7.86 -2.39 -0.02 1.72 16 4 C -0.11 -1.90 5.20 30.59 0.16 -1.75 16 5 C -0.12 -1.79 5.92 30.60 0.18 -1.61 16 6 C -0.11 -1.84 5.92 30.59 0.18 -1.66 16 7 C -0.11 -2.29 5.04 30.59 0.15 -2.14 16 8 C -0.10 -2.58 1.20 -11.54 -0.01 -2.60 16 9 H 0.10 2.47 6.38 -2.39 -0.02 2.46 16 10 C 0.52 17.64 5.93 87.66 0.52 18.16 16 11 O -0.59 -23.44 14.59 -3.06 -0.04 -23.48 16 12 N -0.61 -21.54 2.97 -818.92 -2.43 -23.98 16 13 C 0.12 4.33 6.42 86.36 0.55 4.88 16 14 C -0.11 -4.69 5.30 30.67 0.16 -4.53 16 15 C 0.05 2.22 2.06 -11.51 -0.02 2.20 16 16 C -0.54 -28.95 8.56 25.60 0.22 -28.73 16 17 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 18 C 0.02 1.08 5.30 84.65 0.45 1.53 16 19 N -0.91 -49.89 11.31 21.45 0.24 -49.65 16 20 Si 0.95 42.62 29.54 68.60 2.03 44.65 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 24 C -0.11 -5.01 5.16 30.67 0.16 -4.86 16 25 C 0.11 3.94 5.97 86.36 0.52 4.46 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.03 1.01 6.53 -2.39 -0.02 1.00 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.48 7.57 -2.39 -0.02 1.46 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.08 2.88 7.04 -2.39 -0.02 2.87 16 39 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 3.95 6.04 -2.39 -0.01 3.93 16 45 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.10 2.85 5.15 -2.39 -0.01 2.84 16 Total: -1.00 -60.84 343.27 4.55 -56.29 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.93 Total: 17.69 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 3.84 Total: -21.52 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -2.19 Total: -73.63 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.04 Total: -23.48 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -60.84 4.55 -56.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335600761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.799 kcal (2) G-P(sol) polarization free energy of solvation -60.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds