Wall clock time and date at job start Fri Apr 10 2020 17:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47110 * 2 1 4 4 C 1.53000 * 109.47044 * 239.99988 * 2 1 3 5 5 C 1.52999 * 109.47332 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.46760 * 60.00341 * 5 4 2 7 7 C 1.53000 * 109.46920 * 299.99912 * 6 5 4 8 8 C 1.52995 * 109.47581 * 120.00241 * 2 1 3 9 9 H 1.09008 * 109.47137 * 299.99787 * 8 2 1 10 10 C 1.50702 * 109.47213 * 59.99704 * 8 2 1 11 11 O 1.21277 * 119.99857 * 34.85757 * 10 8 2 12 12 N 1.34779 * 119.99858 * 214.85703 * 10 8 2 13 13 C 1.46930 * 120.62942 * 174.58204 * 12 10 8 14 14 C 1.53191 * 108.77389 * 233.62916 * 13 12 10 15 15 C 1.53043 * 109.31061 * 305.36330 * 14 13 12 16 16 C 1.50699 * 109.45468 * 181.38897 * 15 14 13 17 17 H 1.07998 * 120.00425 * 359.97290 * 16 15 14 18 18 C 1.37881 * 119.99583 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00440 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99649 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47399 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47186 * 119.99767 * 20 18 16 23 23 H 1.48500 * 109.47134 * 239.99491 * 20 18 16 24 24 C 1.53039 * 109.52518 * 61.37509 * 15 14 13 25 25 C 1.46925 * 120.63495 * 354.59886 * 12 10 8 26 26 H 1.09001 * 109.47019 * 299.99461 * 1 2 3 27 27 H 1.08995 * 109.47587 * 60.00336 * 1 2 3 28 28 H 1.09010 * 109.46820 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47177 * 299.99971 * 4 2 1 30 30 H 1.09005 * 109.47090 * 59.99435 * 4 2 1 31 31 H 1.09000 * 109.47568 * 180.02562 * 5 4 2 32 32 H 1.08997 * 109.47325 * 300.00320 * 5 4 2 33 33 H 1.08997 * 109.47218 * 59.99914 * 6 5 4 34 34 H 1.09004 * 109.46457 * 180.02562 * 6 5 4 35 35 H 1.09010 * 109.47234 * 300.00347 * 7 6 5 36 36 H 1.08995 * 109.47193 * 180.02562 * 7 6 5 37 37 H 1.09005 * 109.58424 * 113.84019 * 13 12 10 38 38 H 1.08993 * 109.70242 * 353.48581 * 13 12 10 39 39 H 1.08997 * 109.49538 * 185.41202 * 14 13 12 40 40 H 1.08992 * 109.52323 * 65.33292 * 14 13 12 41 41 H 1.08995 * 109.45967 * 301.35454 * 15 14 13 42 42 H 0.97000 * 120.00596 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.49595 * 58.58233 * 24 15 14 44 44 H 1.09006 * 109.49077 * 178.67288 * 24 15 14 45 45 H 1.08993 * 109.59321 * 246.16344 * 25 12 10 46 46 H 1.09007 * 109.58509 * 6.44363 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5699 -0.7207 -1.2496 6 6 4.0804 -1.4417 -0.0004 7 6 3.5704 -0.7205 1.2489 8 6 2.0400 -0.7213 1.2491 9 1 1.6768 -0.2074 2.1392 10 6 1.5377 -2.1421 1.2492 11 8 1.4194 -2.7434 0.2026 12 7 1.2200 -2.7445 2.4122 13 6 0.6183 -4.0849 2.4211 14 6 -0.6755 -4.0391 3.2402 15 6 -0.3742 -3.4761 4.6310 16 6 -1.6384 -3.4614 5.4512 17 1 -2.5639 -3.8174 5.0233 18 6 -1.6135 -2.9934 6.7479 19 7 -0.4864 -2.5604 7.2692 20 14 -3.1807 -2.9746 7.7643 21 1 -4.3034 -3.5095 6.9529 22 1 -2.9971 -3.8178 8.9729 23 1 -3.4875 -1.5809 8.1751 24 6 0.1651 -2.0499 4.4998 25 6 1.4685 -2.0732 3.6953 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 1.6766 -1.7489 -1.2492 30 1 1.6765 -0.2075 -2.1393 31 1 3.9333 -1.2342 -2.1398 32 1 3.9329 0.3070 -1.2498 33 1 3.7174 -2.4695 -0.0002 34 1 5.1705 -1.4409 -0.0005 35 1 3.9334 0.3074 1.2487 36 1 3.9344 -1.2338 2.1388 37 1 1.3120 -4.7939 2.8730 38 1 0.3937 -4.3936 1.4002 39 1 -1.0816 -5.0461 3.3354 40 1 -1.4018 -3.3999 2.7384 41 1 0.3703 -4.1021 5.1227 42 1 -0.4688 -2.2315 8.1816 43 1 -0.5690 -1.4293 3.9859 44 1 0.3572 -1.6410 5.4918 45 1 2.2315 -2.6181 4.2511 46 1 1.8070 -1.0530 3.5145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335600762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:19 Heat of formation + Delta-G solvation = -76.060724 kcal Electronic energy + Delta-G solvation = -23648.421543 eV Core-core repulsion = 20536.026577 eV Total energy + Delta-G solvation = -3112.394966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.85632 -39.27361 -37.55529 -35.34085 -33.51894 -33.34513 -31.95872 -31.34834 -28.12167 -27.36839 -25.19844 -24.09754 -23.56129 -22.24312 -21.80011 -20.81457 -19.41010 -18.51689 -17.85082 -16.60439 -16.55414 -16.38098 -16.01086 -15.23986 -14.96464 -14.87089 -14.79130 -14.47113 -14.30696 -14.10511 -13.85978 -13.54297 -13.42519 -13.15293 -12.88598 -12.83577 -12.73195 -12.44644 -12.37092 -12.29569 -12.14775 -11.90210 -11.81161 -11.70757 -11.43379 -11.00259 -10.97802 -10.92163 -10.71574 -10.41501 -9.96108 -9.46857 -8.08108 -6.21333 1.39791 1.43300 1.53101 1.75045 2.16280 2.43937 3.18425 3.55079 3.72983 3.84461 3.97854 4.16501 4.25845 4.26048 4.32974 4.38243 4.48111 4.52205 4.56838 4.58766 4.63882 4.66984 4.78858 4.81965 4.86604 4.91717 4.99349 5.02259 5.07333 5.15166 5.18729 5.22706 5.26917 5.37599 5.39999 5.42876 5.44096 5.48894 5.58685 5.64840 5.84919 5.98751 6.14902 6.39390 6.63405 6.88199 7.35480 7.46534 8.95449 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.030942 B = 0.004376 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.701039 B = 6396.886653 C = 6409.208382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.067 4.067 3 H 0.096 0.904 4 C -0.142 4.142 5 C -0.107 4.107 6 C -0.123 4.123 7 C -0.103 4.103 8 C -0.107 4.107 9 H 0.097 0.903 10 C 0.521 3.479 11 O -0.567 6.567 12 N -0.607 5.607 13 C 0.118 3.882 14 C -0.112 4.112 15 C 0.046 3.954 16 C -0.535 4.535 17 H 0.045 0.955 18 C 0.020 3.980 19 N -0.911 5.911 20 Si 0.947 3.053 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.279 1.279 24 C -0.114 4.114 25 C 0.113 3.887 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.030 0.970 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.040 0.960 41 H 0.002 0.998 42 H 0.262 0.738 43 H 0.028 0.972 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.658 6.820 -12.184 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.085 4.085 3 H 0.114 0.886 4 C -0.179 4.179 5 C -0.144 4.144 6 C -0.160 4.160 7 C -0.141 4.141 8 C -0.128 4.128 9 H 0.115 0.885 10 C 0.312 3.688 11 O -0.448 6.448 12 N -0.339 5.339 13 C -0.004 4.004 14 C -0.150 4.150 15 C 0.028 3.972 16 C -0.573 4.573 17 H 0.064 0.936 18 C -0.179 4.179 19 N -0.551 5.551 20 Si 0.774 3.226 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.205 1.205 24 C -0.153 4.153 25 C -0.009 4.009 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.020 0.980 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.660 6.564 -12.552 16.602 hybrid contribution -1.190 -0.368 1.050 1.629 sum 7.471 6.195 -11.501 15.049 Atomic orbital electron populations 1.21865 0.95981 1.00745 1.02103 1.20960 0.94863 0.99443 0.93261 0.88632 1.22075 0.96179 1.03335 0.96293 1.21407 0.95256 1.00636 0.97149 1.21560 1.00420 0.99039 0.94986 1.21487 0.91224 1.02914 0.98473 1.21547 0.98467 0.91600 1.01195 0.88483 1.21064 0.76077 0.89382 0.82326 1.90441 1.56094 1.67120 1.31126 1.48364 1.60775 1.17949 1.06774 1.21504 0.94566 0.83818 1.00550 1.21838 0.95913 1.00414 0.96878 1.18597 0.94825 0.92976 0.90850 1.21570 0.95735 1.41847 0.98153 0.93620 1.25607 0.98721 0.94960 0.98648 1.69946 1.26643 1.43321 1.15161 0.85670 0.80503 0.77731 0.78714 1.19783 1.20659 1.20507 1.21774 0.94520 0.99195 0.99786 1.21939 0.98021 0.97986 0.83003 0.92706 0.91328 0.95116 0.89751 0.92410 0.92412 0.90898 0.94071 0.90782 0.88398 0.91701 0.91804 0.90289 0.92121 0.94080 0.98033 0.92896 0.95322 0.90276 0.91891 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 8.93 71.98 0.64 -3.14 16 2 C -0.07 -1.53 2.46 -10.80 -0.03 -1.55 16 3 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 4 C -0.14 -3.41 4.90 30.59 0.15 -3.26 16 5 C -0.11 -2.17 5.92 30.60 0.18 -1.99 16 6 C -0.12 -2.68 5.64 30.60 0.17 -2.51 16 7 C -0.10 -2.13 5.44 30.61 0.17 -1.96 16 8 C -0.11 -2.67 1.86 -11.53 -0.02 -2.69 16 9 H 0.10 2.33 5.94 -2.38 -0.01 2.32 16 10 C 0.52 16.85 4.98 87.66 0.44 17.29 16 11 O -0.57 -20.73 10.93 -3.02 -0.03 -20.76 16 12 N -0.61 -21.03 2.97 -818.91 -2.43 -23.46 16 13 C 0.12 4.32 6.41 86.36 0.55 4.87 16 14 C -0.11 -4.66 5.30 30.67 0.16 -4.50 16 15 C 0.05 2.22 2.06 -11.51 -0.02 2.19 16 16 C -0.53 -28.89 8.56 25.60 0.22 -28.67 16 17 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 18 C 0.02 1.05 5.30 84.66 0.45 1.50 16 19 N -0.91 -49.99 11.31 21.45 0.24 -49.75 16 20 Si 0.95 42.68 29.54 68.60 2.03 44.71 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 C -0.11 -4.99 5.15 30.67 0.16 -4.83 16 25 C 0.11 3.87 6.31 86.36 0.54 4.41 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.03 0.95 6.82 -2.38 -0.02 0.93 16 29 H 0.08 2.63 4.86 -6.05 -0.03 2.60 16 30 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.04 1.15 6.47 -2.39 -0.02 1.14 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.08 2.86 7.05 -2.39 -0.02 2.84 16 39 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 3.88 6.04 -2.38 -0.01 3.87 16 45 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.10 2.83 5.34 -2.38 -0.01 2.82 16 Total: -1.00 -59.42 336.00 4.48 -54.94 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.92 Total: 19.16 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 3.77 Total: -24.84 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -2.19 Total: -73.21 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.03 Total: -20.76 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -59.42 4.48 -54.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335600762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.123 kcal (2) G-P(sol) polarization free energy of solvation -59.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds