Wall clock time and date at job start Fri Apr 10 2020 17:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47620 * 2 1 4 4 C 1.53002 * 109.47062 * 240.00143 * 2 1 3 5 5 C 1.53000 * 109.47062 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47237 * 60.00389 * 5 4 2 7 7 C 1.53002 * 109.46777 * 299.99786 * 6 5 4 8 8 C 1.52996 * 109.47237 * 120.00531 * 2 1 3 9 9 H 1.08999 * 109.47791 * 59.99775 * 8 2 1 10 10 C 1.50703 * 109.46860 * 299.99823 * 8 2 1 11 11 O 1.21286 * 119.99917 * 336.92471 * 10 8 2 12 12 N 1.34780 * 119.99918 * 156.93027 * 10 8 2 13 13 C 1.46925 * 120.62707 * 175.05894 * 12 10 8 14 14 C 1.53194 * 108.77697 * 126.37003 * 13 12 10 15 15 C 1.53038 * 109.31312 * 54.62711 * 14 13 12 16 16 C 1.50697 * 109.45640 * 178.62866 * 15 14 13 17 17 H 1.07999 * 120.00545 * 0.03254 * 16 15 14 18 18 C 1.37879 * 119.99801 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00190 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99984 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47043 * 90.00120 * 20 18 16 22 22 H 1.48508 * 109.46937 * 210.00177 * 20 18 16 23 23 H 1.48497 * 109.47331 * 329.99826 * 20 18 16 24 24 C 1.53040 * 109.54105 * 298.63673 * 15 14 13 25 25 C 1.46918 * 120.63234 * 355.02732 * 12 10 8 26 26 H 1.08996 * 109.47246 * 299.99725 * 1 2 3 27 27 H 1.09000 * 109.46972 * 59.99753 * 1 2 3 28 28 H 1.09003 * 109.47119 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47142 * 60.00208 * 4 2 1 30 30 H 1.09003 * 109.47439 * 300.00154 * 4 2 1 31 31 H 1.09005 * 109.47283 * 299.99832 * 5 4 2 32 32 H 1.09010 * 109.47390 * 179.97438 * 5 4 2 33 33 H 1.08999 * 109.47517 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.47791 * 59.99775 * 6 5 4 35 35 H 1.09003 * 109.47439 * 299.99953 * 7 6 5 36 36 H 1.09004 * 109.47159 * 180.02562 * 7 6 5 37 37 H 1.08995 * 109.59265 * 6.57852 * 13 12 10 38 38 H 1.09005 * 109.58382 * 246.15502 * 13 12 10 39 39 H 1.09000 * 109.49092 * 294.68004 * 14 13 12 40 40 H 1.08995 * 109.49795 * 174.58383 * 14 13 12 41 41 H 1.09000 * 109.45706 * 58.66252 * 15 14 13 42 42 H 0.97004 * 120.00281 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.49411 * 181.31411 * 24 15 14 44 44 H 1.08992 * 109.49526 * 301.41663 * 24 15 14 45 45 H 1.09007 * 109.58720 * 353.42646 * 25 12 10 46 46 H 1.09004 * 109.58514 * 113.84265 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4435 0.0002 7 6 3.5695 -0.7223 1.2495 8 6 2.0400 -0.7213 1.2491 9 1 1.6767 -1.7490 1.2492 10 6 1.5377 -0.0110 2.4796 11 8 1.2162 1.1568 2.4169 12 7 1.4458 -0.6734 3.6499 13 6 1.0615 0.0312 4.8806 14 6 -0.1261 -0.6985 5.5161 15 6 0.2358 -2.1712 5.7216 16 6 -0.9180 -2.8849 6.3776 17 1 -1.8193 -2.3428 6.6227 18 6 -0.8232 -4.2301 6.6646 19 7 0.2745 -4.8904 6.3664 20 14 -2.2537 -5.1150 7.4770 21 1 -3.1594 -5.6556 6.4316 22 1 -1.7370 -6.2309 8.3097 23 1 -3.0020 -4.1621 8.3356 24 6 0.5324 -2.8193 4.3673 25 6 1.7275 -2.1136 3.7189 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6767 -0.2074 -2.1392 30 1 1.6767 -1.7489 -1.2494 31 1 3.9338 0.3058 -1.2487 32 1 3.9334 -1.2360 -2.1388 33 1 5.1695 -1.4435 0.0007 34 1 3.7158 -2.4710 0.0000 35 1 3.9332 0.3053 1.2498 36 1 3.9328 -1.2362 2.1395 37 1 0.7755 1.0553 4.6413 38 1 1.9012 0.0370 5.5756 39 1 -0.9923 -0.6252 4.8584 40 1 -0.3599 -0.2436 6.4785 41 1 1.1169 -2.2430 6.3593 42 1 0.3411 -5.8369 6.5680 43 1 0.7673 -3.8738 4.5123 44 1 -0.3400 -2.7259 3.7206 45 1 1.8810 -2.5046 2.7130 46 1 2.6215 -2.2828 4.3192 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335600764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:22 Heat of formation + Delta-G solvation = -75.036379 kcal Electronic energy + Delta-G solvation = -23333.370464 eV Core-core repulsion = 20221.019917 eV Total energy + Delta-G solvation = -3112.350547 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.33619 -38.03579 -36.56720 -33.54505 -32.51748 -31.79842 -30.59086 -29.91294 -26.74518 -25.98465 -23.78497 -22.61259 -22.23708 -21.31918 -20.24290 -19.33491 -18.20241 -16.93544 -16.13090 -15.67789 -14.96301 -14.64260 -14.55142 -14.40595 -14.15463 -13.64313 -13.30125 -13.08616 -12.85982 -12.61154 -12.53480 -12.32795 -12.04008 -11.84854 -11.60811 -11.49343 -11.29308 -11.19733 -10.95224 -10.88560 -10.65337 -10.47630 -10.45114 -10.30878 -10.10594 -10.05919 -9.63748 -9.19306 -9.15423 -8.88775 -8.39017 -7.95684 -6.04391 -4.10388 3.04196 3.27338 3.34451 3.38002 3.51695 4.39945 4.59307 4.64048 4.70885 5.07513 5.10489 5.17022 5.24773 5.33571 5.39426 5.45962 5.48822 5.66000 5.71156 5.76787 5.83004 5.91699 5.94899 5.97625 6.01645 6.04886 6.09753 6.12124 6.16918 6.20752 6.23660 6.35128 6.45052 6.47508 6.51925 6.66758 6.91438 7.04471 7.16235 7.27917 7.65661 7.91068 7.98203 8.03387 8.39350 8.64075 8.93032 9.54796 11.01116 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024859 B = 0.004402 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.065241 B = 6359.493244 C = 6628.449681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.070 4.070 3 H 0.078 0.922 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.107 4.107 8 C -0.103 4.103 9 H 0.094 0.906 10 C 0.517 3.483 11 O -0.558 6.558 12 N -0.600 5.600 13 C 0.111 3.889 14 C -0.123 4.123 15 C 0.049 3.951 16 C -0.512 4.512 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.124 4.124 25 C 0.102 3.898 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.027 0.973 42 H 0.260 0.740 43 H 0.104 0.896 44 H 0.038 0.962 45 H 0.069 0.931 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.879 5.427 -12.828 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.089 4.089 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.145 4.145 8 C -0.125 4.125 9 H 0.112 0.888 10 C 0.306 3.694 11 O -0.438 6.438 12 N -0.332 5.332 13 C -0.011 4.011 14 C -0.161 4.161 15 C 0.030 3.970 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.163 4.163 25 C -0.020 4.020 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.122 0.878 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.785 5.848 -12.815 15.636 hybrid contribution -0.808 -0.748 0.568 1.239 sum 5.977 5.101 -12.248 14.551 Atomic orbital electron populations 1.21885 0.95011 1.01582 1.02387 1.20913 0.95831 0.99733 0.92452 0.90392 1.21621 0.95335 1.00780 0.97450 1.21554 0.95852 1.00723 0.97644 1.21525 1.00177 0.99534 0.94209 1.21444 0.92996 1.01484 0.98585 1.21412 0.96913 1.00935 0.93201 0.88840 1.20520 0.77588 0.86943 0.84388 1.90609 1.50771 1.17176 1.85246 1.48256 1.66682 1.10210 1.08016 1.21677 0.98022 0.96495 0.84951 1.21996 0.96022 0.99001 0.99069 1.18629 0.96929 0.88709 0.92699 1.21215 1.00971 0.94112 1.38691 0.92728 1.24951 0.95734 0.97576 0.95644 1.69834 1.26264 1.09071 1.47960 0.86625 0.82688 0.79382 0.79499 1.20735 1.21239 1.19956 1.22020 0.93973 1.02830 0.97437 1.22089 1.00337 0.78883 1.00711 0.91547 0.92939 0.93054 0.91898 0.91885 0.92026 0.92133 0.91812 0.91663 0.91546 0.91318 0.90436 0.92370 0.93017 0.92264 0.95495 0.92991 0.87788 0.94305 0.91277 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.90 37.16 0.33 -1.69 16 2 C -0.07 -0.89 1.88 -90.62 -0.17 -1.06 16 3 H 0.08 1.08 7.88 -51.93 -0.41 0.67 16 4 C -0.11 -1.15 5.20 -26.73 -0.14 -1.29 16 5 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 6 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 7 C -0.11 -1.26 5.18 -26.76 -0.14 -1.40 16 8 C -0.10 -1.41 1.26 -91.80 -0.12 -1.53 16 9 H 0.09 1.26 6.14 -51.93 -0.32 0.95 16 10 C 0.52 8.97 6.06 -10.98 -0.07 8.90 16 11 O -0.56 -11.13 14.30 5.55 0.08 -11.05 16 12 N -0.60 -10.79 2.97 -172.77 -0.51 -11.30 16 13 C 0.11 2.06 6.44 -3.71 -0.02 2.03 16 14 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 15 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 16 C -0.51 -13.63 8.56 -34.44 -0.29 -13.93 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 19 N -0.89 -24.31 11.31 55.43 0.63 -23.68 16 20 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.12 -2.72 5.15 -26.61 -0.14 -2.86 16 25 C 0.10 1.81 6.10 -3.72 -0.02 1.78 16 26 H 0.07 1.07 6.39 -51.93 -0.33 0.74 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.82 7.93 -51.93 -0.41 0.41 16 37 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 43 H 0.10 2.53 6.03 -51.93 -0.31 2.21 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 1.06 5.41 -51.93 -0.28 0.78 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 343.64 15.07 5.18 5.18 Total: -1.00 -28.26 343.64 -9.48 -37.74 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.31 Total: 1.07 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -1.52 Total: -13.73 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.11 Total: -34.98 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.26 -9.48 -37.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335600764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.295 kcal (2) G-P(sol) polarization free energy of solvation -28.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds