Wall clock time and date at job start Fri Apr 10 2020 17:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47357 * 2 1 4 4 C 1.53009 * 109.47160 * 239.99691 * 2 1 3 5 5 C 1.53001 * 109.47160 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47239 * 59.99900 * 5 4 2 7 7 C 1.52996 * 109.47329 * 300.00255 * 6 5 4 8 8 H 1.09000 * 109.47499 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47171 * 299.99899 * 7 6 5 10 10 O 1.21284 * 120.00043 * 109.27216 * 9 7 6 11 11 N 1.34777 * 119.99653 * 289.27220 * 9 7 6 12 12 C 1.46921 * 120.63332 * 4.10361 * 11 9 7 13 13 C 1.52758 * 109.00818 * 233.58419 * 12 11 9 14 14 C 1.53045 * 109.38419 * 305.58622 * 13 12 11 15 15 C 1.50697 * 109.46091 * 181.26073 * 14 13 12 16 16 H 1.08001 * 119.99596 * 239.92995 * 15 14 13 17 17 C 1.37876 * 119.99962 * 59.93365 * 15 14 13 18 18 N 1.31506 * 120.00229 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99560 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47205 * 90.00006 * 19 17 15 21 21 H 1.48504 * 109.46805 * 209.99586 * 19 17 15 22 22 H 1.48496 * 109.47542 * 329.99562 * 19 17 15 23 23 C 1.53041 * 109.53845 * 61.23719 * 14 13 12 24 24 C 1.46929 * 120.62913 * 184.37829 * 11 9 7 25 25 C 1.53001 * 109.47168 * 59.99701 * 7 6 5 26 26 H 1.09003 * 109.46676 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47124 * 299.99938 * 1 2 3 28 28 H 1.09000 * 109.46923 * 60.00424 * 1 2 3 29 29 H 1.09001 * 109.46576 * 60.00304 * 4 2 1 30 30 H 1.08990 * 109.47139 * 300.00224 * 4 2 1 31 31 H 1.08993 * 109.47124 * 180.02562 * 5 4 2 32 32 H 1.09003 * 109.46676 * 300.00061 * 5 4 2 33 33 H 1.08999 * 109.46612 * 59.99953 * 6 5 4 34 34 H 1.09000 * 109.46951 * 179.97438 * 6 5 4 35 35 H 1.09007 * 109.58412 * 353.41186 * 12 11 9 36 36 H 1.08998 * 109.59024 * 113.83863 * 12 11 9 37 37 H 1.08996 * 109.56671 * 185.54934 * 13 12 11 38 38 H 1.08999 * 109.36286 * 65.49566 * 13 12 11 39 39 H 1.09006 * 109.44473 * 301.22881 * 14 13 12 40 40 H 0.97006 * 119.99983 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.50026 * 178.68423 * 23 14 13 42 42 H 1.09006 * 109.49689 * 58.58579 * 23 14 13 43 43 H 1.08999 * 109.58747 * 246.15966 * 24 11 9 44 44 H 1.09004 * 109.58706 * 6.44413 * 24 11 9 45 45 H 1.08999 * 109.47357 * 59.99945 * 25 7 6 46 46 H 1.09005 * 109.47111 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 3.5701 -0.7208 -1.2496 6 6 4.0806 -1.4416 -0.0003 7 6 3.5706 -0.7204 1.2489 8 1 3.9340 -1.2341 2.1389 9 6 4.0724 0.7007 1.2486 10 8 3.3012 1.6161 1.0531 11 7 5.3782 0.9543 1.4655 12 6 6.3398 -0.1465 1.6146 13 6 7.1099 0.0391 2.9208 14 6 7.7410 1.4332 2.9447 15 6 8.5269 1.6068 4.2188 16 1 8.2674 2.3950 4.9100 17 6 9.5770 0.7594 4.5019 18 7 9.8926 -0.2006 3.6604 19 14 10.5514 0.9752 6.0810 20 1 9.9314 0.1647 7.1599 21 1 11.9499 0.5247 5.8650 22 1 10.5477 2.4074 6.4733 23 6 6.6406 2.4945 2.8757 24 6 5.8661 2.3367 1.5634 25 6 2.0406 -0.7209 1.2492 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6767 -0.2075 -2.1392 30 1 1.6767 -1.7489 -1.2492 31 1 3.9334 -1.2342 -2.1397 32 1 3.9329 0.3071 -1.2499 33 1 3.7176 -2.4694 -0.0001 34 1 5.1706 -1.4416 -0.0008 35 1 5.8065 -1.0969 1.6384 36 1 7.0380 -0.1377 0.7776 37 1 7.8926 -0.7159 2.9935 38 1 6.4247 -0.0644 3.7621 39 1 8.4072 1.5446 2.0890 40 1 10.6312 -0.7971 3.8599 41 1 7.0893 3.4870 2.9162 42 1 5.9597 2.3678 3.7174 43 1 6.5249 2.5521 0.7221 44 1 5.0205 3.0244 1.5508 45 1 1.6776 -1.7487 1.2495 46 1 1.6773 -0.2066 2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335905715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:31 Heat of formation + Delta-G solvation = -68.049546 kcal Electronic energy + Delta-G solvation = -23403.566812 eV Core-core repulsion = 20291.519237 eV Total energy + Delta-G solvation = -3112.047575 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.53270 -37.90636 -36.39618 -33.71743 -32.69254 -31.26710 -30.70595 -29.96570 -26.40672 -26.24290 -23.87916 -22.68019 -22.04295 -21.45835 -20.31155 -19.37606 -18.05143 -16.71032 -16.09562 -15.62596 -15.17906 -14.73505 -14.58201 -14.32792 -13.70882 -13.67965 -13.34239 -13.06751 -12.78546 -12.67893 -12.36714 -12.31774 -12.04667 -11.86291 -11.82161 -11.48701 -11.37167 -11.17240 -10.95421 -10.85572 -10.65227 -10.48086 -10.39884 -10.10621 -10.02054 -9.94789 -9.60785 -9.18303 -9.06420 -8.80171 -8.39296 -7.96234 -6.05024 -4.11095 3.04003 3.26832 3.34051 3.37514 3.52534 4.39364 4.67343 4.76618 4.77647 5.05718 5.20085 5.24169 5.24850 5.43411 5.45252 5.55531 5.62770 5.67944 5.72365 5.80280 5.88427 5.89660 5.92974 5.97347 6.03331 6.05199 6.08896 6.15702 6.23412 6.28670 6.34365 6.39149 6.43835 6.46761 6.64853 6.78178 6.91484 7.03675 7.16310 7.26910 7.65063 7.90177 7.98518 8.02818 8.38563 8.64979 8.92315 9.54144 11.00438 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035272 B = 0.004100 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.632337 B = 6826.996266 C = 7050.521989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 H 0.113 0.887 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.109 4.109 8 H 0.093 0.907 9 C 0.520 3.480 10 O -0.554 6.554 11 N -0.599 5.599 12 C 0.100 3.900 13 C -0.126 4.126 14 C 0.049 3.951 15 C -0.512 4.512 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.112 3.888 25 C -0.089 4.089 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.038 0.962 39 H 0.027 0.973 40 H 0.260 0.740 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.644 -3.837 -8.128 15.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 H 0.131 0.869 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.152 4.152 7 C -0.130 4.130 8 H 0.111 0.889 9 C 0.309 3.691 10 O -0.434 6.434 11 N -0.331 5.331 12 C -0.022 4.022 13 C -0.164 4.164 14 C 0.030 3.970 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.161 4.161 24 C -0.011 4.011 25 C -0.127 4.127 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.887 -3.498 -8.251 15.697 hybrid contribution 0.758 -0.094 0.993 1.253 sum -12.130 -3.592 -7.258 14.585 Atomic orbital electron populations 1.21786 0.96108 1.00804 1.01247 1.21595 0.94668 1.03361 0.93636 0.86914 1.21557 0.95199 1.00016 0.97923 1.21538 0.96060 1.00954 0.97290 1.21652 1.01232 0.99049 0.93273 1.21327 0.97504 0.93979 1.00233 0.88883 1.20484 0.81720 0.91048 0.75888 1.90488 1.54951 1.47112 1.50810 1.48248 1.07191 1.08103 1.69525 1.22060 0.91137 0.88141 1.00818 1.21958 0.98700 1.03363 0.92379 1.18629 0.91412 0.89552 0.97371 1.21212 1.13885 1.14710 1.05205 0.92734 1.24949 0.97041 0.95261 0.96668 1.69832 1.29184 1.18233 1.35850 0.86622 0.79330 0.78436 0.83781 1.20741 1.21244 1.19963 1.22002 0.98478 1.00816 0.94819 1.21670 0.98261 0.82269 0.98856 1.21345 0.92476 1.00049 0.98785 0.93533 0.92969 0.93207 0.92546 0.92648 0.92106 0.91896 0.91110 0.90741 0.90996 0.92055 0.87775 0.94345 0.95498 0.92987 0.92232 0.93043 0.92433 0.90461 0.92007 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.20 37.16 0.34 -1.19 16 2 C -0.11 -1.45 2.43 -90.61 -0.22 -1.67 16 3 H 0.11 1.77 5.14 -51.93 -0.27 1.51 16 4 C -0.11 -1.23 5.20 -26.73 -0.14 -1.37 16 5 C -0.12 -1.44 5.70 -26.73 -0.15 -1.59 16 6 C -0.11 -1.35 5.06 -26.73 -0.14 -1.49 16 7 C -0.11 -1.48 2.16 -91.77 -0.20 -1.68 16 8 H 0.09 1.23 7.31 -51.93 -0.38 0.85 16 9 C 0.52 8.76 5.59 -10.98 -0.06 8.70 16 10 O -0.55 -10.48 12.76 5.55 0.07 -10.41 16 11 N -0.60 -10.56 2.98 -173.03 -0.52 -11.08 16 12 C 0.10 1.76 5.18 -3.94 -0.02 1.73 16 13 C -0.13 -2.72 5.14 -26.83 -0.14 -2.86 16 14 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 15 C -0.51 -13.56 8.56 -34.44 -0.29 -13.85 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -24.20 11.30 55.43 0.63 -23.58 16 19 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 24 C 0.11 2.04 6.42 -3.71 -0.02 2.02 16 25 C -0.09 -1.12 4.46 -26.73 -0.12 -1.24 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.89 7.22 -51.93 -0.37 0.51 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.90 5.77 -51.93 -0.30 0.60 16 35 H 0.07 1.08 4.63 -51.92 -0.24 0.84 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 2.51 6.03 -51.93 -0.31 2.20 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.41 7.03 -51.93 -0.37 1.04 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -27.62 336.99 -9.47 -37.09 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -8.12 Total: 1.81 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -1.59 Total: -14.62 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.11 Total: -34.65 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.62 -9.47 -37.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335905715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.959 kcal (2) G-P(sol) polarization free energy of solvation -27.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds