Wall clock time and date at job start Fri Apr 10 2020 17:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47357 * 2 1 4 4 C 1.53009 * 109.47160 * 239.99691 * 2 1 3 5 5 C 1.53001 * 109.47160 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47239 * 59.99900 * 5 4 2 7 7 C 1.52996 * 109.47329 * 300.00255 * 6 5 4 8 8 H 1.09000 * 109.47499 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47171 * 299.99899 * 7 6 5 10 10 O 1.21284 * 120.00043 * 109.27216 * 9 7 6 11 11 N 1.34777 * 119.99653 * 289.27220 * 9 7 6 12 12 C 1.46921 * 120.63332 * 4.10361 * 11 9 7 13 13 C 1.52758 * 109.00818 * 233.58419 * 12 11 9 14 14 C 1.53045 * 109.38419 * 305.58622 * 13 12 11 15 15 C 1.50697 * 109.46091 * 181.26073 * 14 13 12 16 16 H 1.08001 * 119.99596 * 239.92995 * 15 14 13 17 17 C 1.37876 * 119.99962 * 59.93365 * 15 14 13 18 18 N 1.31506 * 120.00229 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99560 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47205 * 90.00006 * 19 17 15 21 21 H 1.48504 * 109.46805 * 209.99586 * 19 17 15 22 22 H 1.48496 * 109.47542 * 329.99562 * 19 17 15 23 23 C 1.53041 * 109.53845 * 61.23719 * 14 13 12 24 24 C 1.46929 * 120.62913 * 184.37829 * 11 9 7 25 25 C 1.53001 * 109.47168 * 59.99701 * 7 6 5 26 26 H 1.09003 * 109.46676 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47124 * 299.99938 * 1 2 3 28 28 H 1.09000 * 109.46923 * 60.00424 * 1 2 3 29 29 H 1.09001 * 109.46576 * 60.00304 * 4 2 1 30 30 H 1.08990 * 109.47139 * 300.00224 * 4 2 1 31 31 H 1.08993 * 109.47124 * 180.02562 * 5 4 2 32 32 H 1.09003 * 109.46676 * 300.00061 * 5 4 2 33 33 H 1.08999 * 109.46612 * 59.99953 * 6 5 4 34 34 H 1.09000 * 109.46951 * 179.97438 * 6 5 4 35 35 H 1.09007 * 109.58412 * 353.41186 * 12 11 9 36 36 H 1.08998 * 109.59024 * 113.83863 * 12 11 9 37 37 H 1.08996 * 109.56671 * 185.54934 * 13 12 11 38 38 H 1.08999 * 109.36286 * 65.49566 * 13 12 11 39 39 H 1.09006 * 109.44473 * 301.22881 * 14 13 12 40 40 H 0.97006 * 119.99983 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.50026 * 178.68423 * 23 14 13 42 42 H 1.09006 * 109.49689 * 58.58579 * 23 14 13 43 43 H 1.08999 * 109.58747 * 246.15966 * 24 11 9 44 44 H 1.09004 * 109.58706 * 6.44413 * 24 11 9 45 45 H 1.08999 * 109.47357 * 59.99945 * 25 7 6 46 46 H 1.09005 * 109.47111 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 3.5701 -0.7208 -1.2496 6 6 4.0806 -1.4416 -0.0003 7 6 3.5706 -0.7204 1.2489 8 1 3.9340 -1.2341 2.1389 9 6 4.0724 0.7007 1.2486 10 8 3.3012 1.6161 1.0531 11 7 5.3782 0.9543 1.4655 12 6 6.3398 -0.1465 1.6146 13 6 7.1099 0.0391 2.9208 14 6 7.7410 1.4332 2.9447 15 6 8.5269 1.6068 4.2188 16 1 8.2674 2.3950 4.9100 17 6 9.5770 0.7594 4.5019 18 7 9.8926 -0.2006 3.6604 19 14 10.5514 0.9752 6.0810 20 1 9.9314 0.1647 7.1599 21 1 11.9499 0.5247 5.8650 22 1 10.5477 2.4074 6.4733 23 6 6.6406 2.4945 2.8757 24 6 5.8661 2.3367 1.5634 25 6 2.0406 -0.7209 1.2492 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6767 -0.2075 -2.1392 30 1 1.6767 -1.7489 -1.2492 31 1 3.9334 -1.2342 -2.1397 32 1 3.9329 0.3071 -1.2499 33 1 3.7176 -2.4694 -0.0001 34 1 5.1706 -1.4416 -0.0008 35 1 5.8065 -1.0969 1.6384 36 1 7.0380 -0.1377 0.7776 37 1 7.8926 -0.7159 2.9935 38 1 6.4247 -0.0644 3.7621 39 1 8.4072 1.5446 2.0890 40 1 10.6312 -0.7971 3.8599 41 1 7.0893 3.4870 2.9162 42 1 5.9597 2.3678 3.7174 43 1 6.5249 2.5521 0.7221 44 1 5.0205 3.0244 1.5508 45 1 1.6776 -1.7487 1.2495 46 1 1.6773 -0.2066 2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335905715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:31 Heat of formation + Delta-G solvation = -81.035339 kcal Electronic energy + Delta-G solvation = -23404.129918 eV Core-core repulsion = 20291.519237 eV Total energy + Delta-G solvation = -3112.610682 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.78534 -39.23629 -37.79135 -35.41046 -33.96063 -32.67990 -32.03768 -31.42393 -28.09971 -27.22083 -25.38095 -24.15877 -23.46343 -22.54843 -21.44553 -20.84438 -19.49014 -18.46872 -17.68378 -16.74153 -16.56795 -16.43570 -15.88502 -15.37505 -15.04660 -14.82553 -14.80051 -14.58980 -14.32521 -14.12248 -13.74243 -13.36641 -13.28030 -13.10586 -12.97443 -12.88941 -12.80536 -12.50960 -12.45054 -12.27751 -12.14711 -11.91784 -11.78287 -11.60408 -11.36906 -11.03352 -10.95641 -10.88613 -10.79983 -10.42437 -10.13943 -9.47737 -8.07917 -6.21158 1.41192 1.43417 1.52164 1.71940 2.15541 2.44104 3.18561 3.53636 3.79955 3.81972 4.00898 4.12297 4.25541 4.28438 4.30646 4.38237 4.49243 4.52022 4.53297 4.57149 4.66617 4.72764 4.76739 4.85877 4.87135 4.96263 4.97829 5.01040 5.08410 5.10432 5.18136 5.19402 5.26015 5.36006 5.36918 5.43334 5.45412 5.52904 5.58652 5.65679 5.81900 5.98473 6.14440 6.39356 6.60386 6.87972 7.29846 7.46558 8.95438 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035272 B = 0.004100 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.632337 B = 6826.996266 C = 7050.521989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 H 0.077 0.923 4 C -0.105 4.105 5 C -0.120 4.120 6 C -0.111 4.111 7 C -0.108 4.108 8 H 0.101 0.899 9 C 0.516 3.484 10 O -0.576 6.576 11 N -0.605 5.605 12 C 0.114 3.886 13 C -0.116 4.116 14 C 0.046 3.954 15 C -0.536 4.536 16 H 0.045 0.955 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 0.948 3.052 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.274 1.274 23 C -0.112 4.112 24 C 0.118 3.882 25 C -0.087 4.087 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.027 0.973 39 H 0.002 0.998 40 H 0.262 0.738 41 H 0.061 0.939 42 H 0.041 0.959 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.661 -5.506 -8.630 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.134 4.134 3 H 0.095 0.905 4 C -0.143 4.143 5 C -0.158 4.158 6 C -0.149 4.149 7 C -0.129 4.129 8 H 0.119 0.881 9 C 0.307 3.693 10 O -0.457 6.457 11 N -0.337 5.337 12 C -0.008 4.008 13 C -0.155 4.155 14 C 0.027 3.973 15 C -0.574 4.574 16 H 0.064 0.936 17 C -0.179 4.179 18 N -0.550 5.550 19 Si 0.774 3.226 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.151 4.151 24 C -0.005 4.005 25 C -0.125 4.125 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.046 0.954 39 H 0.020 0.980 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.915 -5.166 -8.757 17.234 hybrid contribution 1.064 0.481 1.144 1.635 sum -12.850 -4.685 -7.613 15.654 Atomic orbital electron populations 1.21747 0.94777 1.01910 1.01143 1.21512 0.95849 1.01536 0.94539 0.90472 1.21534 0.94593 1.00987 0.97150 1.21535 0.96628 0.99433 0.98204 1.21681 1.01044 1.00163 0.92000 1.21425 0.98286 0.91579 1.01600 0.88127 1.21177 0.80926 0.92491 0.74755 1.90502 1.55311 1.48374 1.51509 1.48301 1.07771 1.07606 1.69976 1.21913 0.91121 0.89436 0.98348 1.21728 0.98081 1.01282 0.94380 1.18601 0.91780 0.91733 0.95157 1.21540 1.14895 1.14736 1.06276 0.93620 1.25607 0.97892 0.95056 0.99394 1.69939 1.29446 1.18565 1.37044 0.85716 0.78094 0.78285 0.80493 1.20249 1.20777 1.19877 1.21843 0.97521 0.99955 0.95757 1.21520 0.98057 0.83219 0.97717 1.21371 0.91633 1.01391 0.98105 0.91731 0.93693 0.92805 0.92330 0.90529 0.90374 0.94846 0.88281 0.91065 0.87923 0.91866 0.90138 0.95395 0.97979 0.92881 0.92072 0.94057 0.91739 0.90382 0.89282 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.20 71.98 0.66 -2.05 16 2 C -0.12 -2.74 2.43 -10.79 -0.03 -2.76 16 3 H 0.08 2.42 5.14 -2.39 -0.01 2.41 16 4 C -0.11 -2.08 5.20 30.60 0.16 -1.92 16 5 C -0.12 -2.59 5.70 30.60 0.17 -2.41 16 6 C -0.11 -2.28 5.06 30.59 0.15 -2.13 16 7 C -0.11 -2.69 2.16 -11.54 -0.02 -2.72 16 8 H 0.10 2.38 7.31 -2.39 -0.02 2.36 16 9 C 0.52 17.04 5.59 87.66 0.49 17.53 16 10 O -0.58 -21.91 12.76 -3.04 -0.04 -21.95 16 11 N -0.60 -21.05 2.98 -819.73 -2.44 -23.50 16 12 C 0.11 3.88 5.18 86.22 0.45 4.33 16 13 C -0.12 -5.07 5.14 30.53 0.16 -4.91 16 14 C 0.05 2.21 2.07 -11.51 -0.02 2.18 16 15 C -0.54 -28.96 8.56 25.60 0.22 -28.74 16 16 H 0.05 2.48 7.74 -2.91 -0.02 2.45 16 17 C 0.02 1.05 5.30 84.66 0.45 1.50 16 18 N -0.91 -49.85 11.30 21.45 0.24 -49.60 16 19 Si 0.95 42.63 29.54 68.60 2.03 44.66 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 23 C -0.11 -4.69 5.30 30.67 0.16 -4.52 16 24 C 0.12 4.32 6.42 86.36 0.55 4.88 16 25 C -0.09 -2.00 4.46 30.60 0.14 -1.86 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.03 0.91 7.22 -2.39 -0.02 0.89 16 33 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.52 5.77 -2.39 -0.01 1.50 16 35 H 0.10 2.87 4.63 -2.38 -0.01 2.86 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.08 3.93 6.03 -2.39 -0.01 3.92 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 40 H 0.26 13.67 8.31 -92.70 -0.77 12.90 16 41 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.04 1.77 8.14 -2.38 -0.02 1.76 16 43 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.08 2.87 7.03 -2.39 -0.02 2.85 16 45 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 46 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -60.15 336.99 4.41 -55.73 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.93 Total: 18.26 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 3.69 Total: -23.61 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -2.20 Total: -73.10 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.04 Total: -21.95 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -60.15 4.41 -55.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335905715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.301 kcal (2) G-P(sol) polarization free energy of solvation -60.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds