Wall clock time and date at job start Fri Apr 10 2020 17:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46502 * 109.47773 * 2 1 4 4 C 1.46501 * 119.99570 * 88.92483 * 3 2 1 5 5 C 1.50692 * 109.47011 * 90.00911 * 4 3 2 6 6 H 1.08002 * 120.00347 * 359.97438 * 5 4 3 7 7 C 1.37886 * 120.00244 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99353 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00165 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47043 * 60.00273 * 9 7 5 11 11 H 1.48496 * 109.46874 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47513 * 300.00327 * 9 7 5 13 13 C 1.34779 * 119.99980 * 268.93490 * 3 2 1 14 14 O 1.21279 * 119.99596 * 185.86697 * 13 3 2 15 15 C 1.50697 * 120.00102 * 5.86441 * 13 3 2 16 16 C 1.52999 * 109.47049 * 127.03820 * 15 13 3 17 17 C 1.53785 * 113.61105 * 283.36083 * 16 15 13 18 18 C 1.53951 * 87.01653 * 220.04907 * 17 16 15 19 19 C 1.53776 * 87.11396 * 25.36483 * 18 17 16 20 20 C 1.53002 * 109.46737 * 247.03545 * 15 13 3 21 21 C 1.53781 * 113.61226 * 156.34359 * 20 15 13 22 22 C 1.53956 * 87.01913 * 220.04623 * 21 20 15 23 23 C 1.53783 * 113.61415 * 58.73422 * 20 15 13 24 24 H 1.09005 * 109.46972 * 54.55282 * 1 2 3 25 25 H 1.08996 * 109.47750 * 174.55376 * 1 2 3 26 26 H 1.09000 * 109.46882 * 294.55569 * 1 2 3 27 27 H 1.08995 * 109.47485 * 120.00404 * 2 1 3 28 28 H 1.09000 * 109.47260 * 240.00506 * 2 1 3 29 29 H 1.09007 * 109.46805 * 210.00280 * 4 3 2 30 30 H 1.08999 * 109.47702 * 330.00152 * 4 3 2 31 31 H 0.97003 * 119.99616 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.46980 * 7.03065 * 15 13 3 33 33 H 1.08996 * 112.85154 * 54.55806 * 16 15 13 34 34 H 1.08998 * 113.61435 * 334.57062 * 17 16 15 35 35 H 1.08995 * 113.61051 * 105.47262 * 17 16 15 36 36 H 1.08999 * 113.54496 * 270.81075 * 18 17 16 37 37 H 1.09005 * 113.74232 * 139.94657 * 18 17 16 38 38 H 1.09004 * 113.61630 * 220.08928 * 19 18 17 39 39 H 1.09001 * 113.61844 * 89.18889 * 19 18 17 40 40 H 1.09003 * 112.84850 * 287.53779 * 20 15 13 41 41 H 1.09000 * 113.61723 * 334.56336 * 21 20 15 42 42 H 1.08998 * 113.61625 * 105.47150 * 21 20 15 43 43 H 1.09001 * 113.53622 * 270.81330 * 22 21 20 44 44 H 1.09000 * 113.74791 * 139.93993 * 22 21 20 45 45 H 1.08999 * 113.61594 * 254.52344 * 23 20 15 46 46 H 1.08994 * 113.61383 * 25.43579 * 23 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2402 2.0796 1.2686 5 6 3.6555 1.8456 1.7300 6 1 4.3230 1.2371 1.1379 7 6 4.0984 2.4083 2.9083 8 7 3.2855 3.1489 3.6296 9 14 5.8526 2.1177 3.4807 10 1 6.7986 2.6337 2.4589 11 1 6.0774 2.8257 4.7665 12 1 6.0762 0.6621 3.6720 13 6 2.2636 2.0093 -1.1670 14 8 2.7676 3.1124 -1.1677 15 6 1.9114 1.3409 -2.4709 16 6 1.0452 2.2830 -3.3094 17 6 -0.4162 2.3603 -2.8368 18 6 -0.8123 2.3713 -4.3244 19 6 0.5133 1.6434 -4.6027 20 6 3.1939 1.0100 -3.2370 21 6 3.0288 -0.1368 -4.2482 22 6 4.4189 -0.6242 -3.8005 23 6 4.1528 0.0890 -2.4642 24 1 -0.3633 0.5960 -0.8372 25 1 -0.3634 -1.0229 -0.0975 26 1 -0.3633 0.4271 0.9347 27 1 1.8933 -0.5139 0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 2.0756 3.1481 1.1286 30 1 1.5460 1.7003 2.0185 31 1 3.5970 3.5445 4.4588 32 1 1.3604 0.4220 -2.2710 33 1 1.5068 3.2585 -3.4624 34 1 -0.7499 1.4707 -2.3026 35 1 -0.6572 3.2852 -2.3129 36 1 -0.8600 3.3716 -4.7549 37 1 -1.6949 1.7719 -4.5480 38 1 1.0215 1.9904 -5.5024 39 1 0.4342 0.5574 -4.5523 40 1 3.6778 1.8934 -3.6537 41 1 2.2228 -0.8267 -3.9983 42 1 2.9954 0.1970 -5.2853 43 1 5.2380 -0.1884 -4.3725 44 1 4.4957 -1.7077 -3.7093 45 1 5.0253 0.6047 -2.0633 46 1 3.6546 -0.5391 -1.7258 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336789433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:45 Heat of formation + Delta-G solvation = -10.218134 kcal Electronic energy + Delta-G solvation = -23628.258046 eV Core-core repulsion = 20518.718229 eV Total energy + Delta-G solvation = -3109.539817 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.37972 -37.93984 -37.71923 -35.19691 -32.78187 -30.73845 -29.99795 -27.02718 -25.93426 -25.33799 -24.49036 -23.42011 -22.91456 -21.54970 -19.73397 -18.84272 -18.12192 -16.56006 -16.26610 -15.66519 -15.53500 -15.19159 -14.70339 -14.46651 -13.93520 -13.63663 -13.40493 -12.99333 -12.50672 -12.46015 -12.31990 -12.06668 -12.02032 -11.94035 -11.61441 -11.51993 -11.30670 -11.15086 -10.93827 -10.85383 -10.71694 -10.50929 -10.29161 -10.24559 -10.15821 -10.14301 -10.04251 -9.61240 -9.53043 -8.59329 -8.38146 -7.55596 -5.99020 -4.02895 3.34512 3.38787 3.41647 3.54868 4.00311 4.48478 4.56393 4.71813 4.77974 4.82187 4.84401 4.95021 5.01730 5.09326 5.29799 5.34935 5.41968 5.52917 5.64088 5.64678 5.67252 5.73075 5.79455 5.84622 5.87809 5.90480 5.94467 5.94782 5.97482 6.06204 6.12961 6.15949 6.28669 6.30248 6.34400 6.44964 6.52369 6.64242 6.73402 7.15710 7.50409 7.65178 7.98198 8.30650 8.55453 8.97583 9.24105 9.61977 11.09027 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018031 B = 0.005810 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.535799 B = 4817.835920 C = 5519.891084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.105 3.895 3 N -0.597 5.597 4 C 0.248 3.752 5 C -0.521 4.521 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.517 3.483 14 O -0.542 6.542 15 C -0.092 4.092 16 C -0.090 4.090 17 C -0.142 4.142 18 C -0.142 4.142 19 C -0.130 4.130 20 C -0.089 4.089 21 C -0.130 4.130 22 C -0.142 4.142 23 C -0.140 4.140 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.434 -8.543 -15.579 18.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.019 4.019 3 N -0.329 5.329 4 C 0.129 3.871 5 C -0.560 4.560 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.304 3.696 14 O -0.420 6.420 15 C -0.114 4.114 16 C -0.109 4.109 17 C -0.179 4.179 18 C -0.180 4.180 19 C -0.168 4.168 20 C -0.108 4.108 21 C -0.168 4.168 22 C -0.180 4.180 23 C -0.177 4.177 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.174 -7.840 -15.364 18.320 hybrid contribution 0.973 -0.151 0.595 1.150 sum -5.201 -7.990 -14.769 17.579 Atomic orbital electron populations 1.22367 0.97036 1.01236 1.02691 1.21436 0.93421 0.84670 1.02351 1.48232 1.63925 1.12975 1.07749 1.19204 0.96255 0.93250 0.78395 1.21404 0.97324 1.31278 1.05962 0.92566 1.24929 0.97626 0.95042 0.96549 1.69926 1.35528 1.33351 1.14809 0.86593 0.84997 0.78179 0.77854 1.20232 1.21237 1.20312 1.20194 0.78615 0.86025 0.84789 1.90642 1.43163 1.20973 1.87188 1.21447 0.96980 0.99166 0.93804 1.22390 0.94122 0.99293 0.95075 1.23086 0.96249 1.02420 0.96180 1.22828 0.97478 1.00669 0.96978 1.22928 0.96422 0.99908 0.97518 1.22353 0.94697 0.97372 0.96368 1.23002 0.97261 0.97723 0.98797 1.22841 0.97377 0.99977 0.97798 1.22993 1.00039 0.98367 0.96334 0.92486 0.92407 0.92092 0.90205 0.91650 0.94275 0.95262 0.92780 0.89605 0.88586 0.89941 0.91510 0.90481 0.91788 0.91724 0.90148 0.88897 0.90321 0.91652 0.90514 0.91742 0.91255 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 10.00 37.15 0.37 -2.02 16 2 C 0.11 1.72 5.69 -4.04 -0.02 1.70 16 3 N -0.60 -12.66 2.46 -175.07 -0.43 -13.09 16 4 C 0.25 6.57 5.12 -5.20 -0.03 6.54 16 5 C -0.52 -14.95 9.39 -34.44 -0.32 -15.27 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 9 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.52 10.77 5.79 -10.99 -0.06 10.70 16 14 O -0.54 -13.95 16.36 5.56 0.09 -13.86 16 15 C -0.09 -1.40 1.20 -91.77 -0.11 -1.51 16 16 C -0.09 -1.24 2.94 -89.81 -0.26 -1.50 16 17 C -0.14 -1.81 7.56 -25.83 -0.20 -2.01 16 18 C -0.14 -1.47 8.09 -25.83 -0.21 -1.67 16 19 C -0.13 -1.36 6.46 -25.92 -0.17 -1.53 16 20 C -0.09 -1.25 3.00 -89.81 -0.27 -1.52 16 21 C -0.13 -1.39 6.11 -25.83 -0.16 -1.55 16 22 C -0.14 -1.60 8.09 -25.82 -0.21 -1.81 16 23 C -0.14 -2.03 7.06 -25.91 -0.18 -2.22 16 24 H 0.06 0.75 5.31 -51.93 -0.28 0.48 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 28 H 0.07 0.92 4.62 -51.93 -0.24 0.68 16 29 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 30 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.09 1.16 4.90 -51.93 -0.25 0.90 16 33 H 0.10 1.51 8.00 -51.93 -0.42 1.10 16 34 H 0.08 1.01 5.60 -51.93 -0.29 0.72 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.77 7.42 -51.93 -0.39 0.38 16 40 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 41 H 0.08 0.77 7.79 -51.93 -0.40 0.36 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.08 1.21 6.41 -51.93 -0.33 0.88 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -32.41 354.29 -9.23 -41.64 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.02 Total: 1.07 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.93 Total: -12.01 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.31 Total: -39.38 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.41 -9.23 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336789433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.427 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds