Wall clock time and date at job start Fri Apr 10 2020 17:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.80882 * 2 1 4 4 C 1.53440 * 109.94173 * 239.37824 * 2 1 3 5 5 C 1.50074 * 110.26360 * 190.99505 * 4 2 1 6 6 C 1.29446 * 124.07638 * 17.12346 * 5 4 2 7 7 C 1.50066 * 124.07428 * 359.50877 * 6 5 4 8 8 C 1.53026 * 110.14869 * 17.13215 * 7 6 5 9 9 H 1.08998 * 109.64275 * 70.24507 * 8 7 6 10 10 C 1.50695 * 109.64177 * 190.66593 * 8 7 6 11 11 O 1.21277 * 120.00103 * 35.95782 * 10 8 7 12 12 N 1.34777 * 119.99737 * 215.95669 * 10 8 7 13 13 C 1.46500 * 119.99995 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.47122 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47167 * 299.99629 * 14 13 12 16 16 C 1.53000 * 109.47263 * 59.99877 * 14 13 12 17 17 C 1.53005 * 109.46969 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.47015 * 179.97438 * 17 14 13 19 19 H 1.08001 * 120.00367 * 0.02562 * 18 17 14 20 20 C 1.37882 * 119.99875 * 180.02562 * 18 17 14 21 21 N 1.31516 * 120.00083 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99885 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46965 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47384 * 119.99612 * 22 20 18 25 25 H 1.48503 * 109.46566 * 239.99362 * 22 20 18 26 26 H 1.09000 * 109.47310 * 305.37637 * 1 2 3 27 27 H 1.08996 * 109.46753 * 65.38121 * 1 2 3 28 28 H 1.09002 * 109.46725 * 185.38025 * 1 2 3 29 29 H 1.09001 * 109.32100 * 70.74468 * 4 2 1 30 30 H 1.08996 * 109.16663 * 311.14765 * 4 2 1 31 31 H 1.08004 * 117.96193 * 197.10758 * 5 4 2 32 32 H 1.08000 * 117.95790 * 179.52966 * 6 5 4 33 33 H 1.08999 * 109.36184 * 256.92167 * 7 6 5 34 34 H 1.09002 * 109.24158 * 137.26380 * 7 6 5 35 35 H 0.97007 * 120.00249 * 0.02562 * 12 10 8 36 36 H 1.09009 * 109.46808 * 299.99771 * 13 12 10 37 37 H 1.08997 * 109.47074 * 59.99900 * 13 12 10 38 38 H 1.08998 * 109.46885 * 60.00072 * 15 14 13 39 39 H 1.09000 * 109.47368 * 180.02562 * 15 14 13 40 40 H 1.08997 * 109.47177 * 300.00397 * 15 14 13 41 41 H 1.08998 * 109.47274 * 60.00422 * 16 14 13 42 42 H 1.09000 * 109.46718 * 179.97438 * 16 14 13 43 43 H 1.08998 * 109.47026 * 300.00073 * 16 14 13 44 44 H 1.08998 * 109.47650 * 300.00172 * 17 14 13 45 45 H 1.09002 * 109.47309 * 60.00109 * 17 14 13 46 46 H 0.96994 * 120.00022 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8994 1.0255 0.0000 4 6 2.0534 -0.7347 -1.2413 5 6 3.5298 -0.9746 -1.1193 6 6 4.1864 -0.9051 -0.0059 7 6 3.5648 -0.5646 1.3169 8 6 2.0456 -0.7338 1.2445 9 1 1.7978 -1.7929 1.1743 10 6 1.4112 -0.1458 2.4785 11 8 1.8770 0.8543 2.9820 12 7 0.3259 -0.7314 3.0224 13 6 -0.2912 -0.1595 4.2217 14 6 -1.4960 -1.0096 4.6301 15 6 -2.5169 -1.0281 3.4906 16 6 -1.0354 -2.4385 4.9254 17 6 -2.1402 -0.4127 5.8829 18 6 -3.3272 -1.2497 6.2848 19 1 -3.5952 -2.1205 5.7049 20 6 -4.0713 -0.9036 7.3929 21 7 -3.7448 0.1565 8.0994 22 14 -5.5423 -1.9415 7.8914 23 1 -5.6965 -3.0710 6.9396 24 1 -5.3312 -2.4736 9.2616 25 1 -6.7688 -1.1046 7.8689 26 1 -0.3634 0.5950 0.8379 27 1 -0.3633 0.4281 -0.9342 28 1 -0.3633 -1.0232 0.0964 29 1 1.8575 -0.1307 -2.1272 30 1 1.5386 -1.6909 -1.3347 31 1 4.0787 -1.2207 -2.0164 32 1 5.2476 -1.1042 -0.0306 33 1 3.8016 0.4683 1.5723 34 1 3.9660 -1.2275 2.0835 35 1 -0.0465 -1.5316 2.6199 36 1 0.4360 -0.1468 5.0337 37 1 -0.6190 0.8585 4.0114 38 1 -2.0577 -1.4535 2.5983 39 1 -3.3754 -1.6333 3.7817 40 1 -2.8450 -0.0102 3.2802 41 1 -0.3082 -2.4253 5.7372 42 1 -1.8937 -3.0439 5.2167 43 1 -0.5763 -2.8639 4.0331 44 1 -1.4128 -0.3998 6.6946 45 1 -2.4683 0.6053 5.6730 46 1 -4.2684 0.4001 8.8786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346023563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:01 Heat of formation + Delta-G solvation = -61.620777 kcal Electronic energy + Delta-G solvation = -22557.161228 eV Core-core repulsion = 19445.392425 eV Total energy + Delta-G solvation = -3111.768803 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.35052 -38.15669 -36.87594 -33.68376 -32.89299 -32.03273 -31.12589 -27.22352 -26.88472 -26.51435 -26.28823 -23.96065 -22.65182 -21.49834 -20.04602 -18.31086 -18.18889 -16.90756 -16.31697 -15.81468 -15.42600 -15.11876 -14.50849 -14.35642 -14.09350 -13.79950 -13.25927 -13.16242 -13.05333 -12.93522 -12.69306 -12.35362 -12.28899 -12.08894 -12.07014 -11.87691 -11.16111 -11.03181 -10.90532 -10.83381 -10.76862 -10.65235 -10.52044 -10.40601 -10.24558 -9.88133 -9.62837 -9.20167 -9.10081 -8.91097 -8.68334 -8.36814 -6.00618 -4.01872 2.08515 2.84658 3.29468 3.37510 3.39558 3.46619 4.41831 4.44728 4.49289 4.60677 4.97214 5.00433 5.08613 5.22899 5.29771 5.32804 5.34996 5.46115 5.52947 5.58041 5.62721 5.71536 5.74966 5.81736 5.86987 5.90270 6.05551 6.16202 6.17821 6.23804 6.30297 6.39411 6.43058 6.58393 6.62411 6.73551 6.78435 7.06091 7.06955 7.12847 7.63820 7.75990 7.79168 7.98345 8.39708 8.48345 9.03267 9.61361 11.10897 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.037355 B = 0.003380 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.381671 B = 8282.250664 C = 8511.252975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.078 4.078 3 H 0.079 0.921 4 C -0.084 4.084 5 C -0.162 4.162 6 C -0.149 4.149 7 C -0.079 4.079 8 C -0.102 4.102 9 H 0.087 0.913 10 C 0.515 3.485 11 O -0.547 6.547 12 N -0.720 5.720 13 C 0.127 3.873 14 C -0.072 4.072 15 C -0.126 4.126 16 C -0.127 4.127 17 C 0.036 3.964 18 C -0.510 4.510 19 H 0.060 0.940 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.888 3.112 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.397 0.603 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.029 0.971 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.550 -4.145 -18.227 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.097 4.097 3 H 0.098 0.902 4 C -0.121 4.121 5 C -0.180 4.180 6 C -0.167 4.167 7 C -0.116 4.116 8 C -0.123 4.123 9 H 0.106 0.894 10 C 0.300 3.700 11 O -0.424 6.424 12 N -0.371 5.371 13 C 0.004 3.996 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.184 4.184 17 C -0.002 4.002 18 C -0.549 4.549 19 H 0.078 0.922 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.716 3.284 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.233 0.767 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.819 -3.326 -17.690 21.533 hybrid contribution -0.969 -0.926 0.239 1.361 sum 10.850 -4.252 -17.451 20.984 Atomic orbital electron populations 1.21925 0.94328 1.02322 1.02508 1.21181 0.95916 0.99825 0.92755 0.90216 1.20587 0.93159 1.00621 0.97742 1.22042 0.96216 1.01946 0.97795 1.22060 0.99650 1.00589 0.94389 1.20352 0.92296 1.03451 0.95530 1.21418 0.96479 1.00911 0.93513 0.89438 1.20459 0.80351 0.84242 0.84908 1.90679 1.63037 1.25532 1.63195 1.46300 1.29934 1.30758 1.30109 1.21615 0.94983 0.97299 0.85663 1.20898 0.92862 0.95004 0.98519 1.21753 0.99391 1.01512 0.95698 1.21758 1.01172 0.96466 0.99011 1.19091 0.95195 0.95978 0.89891 1.21225 1.11714 1.11202 1.10720 0.92206 1.25020 0.97670 0.95203 0.96639 1.69975 1.39855 1.25549 1.18007 0.86599 0.82925 0.80401 0.78430 1.19797 1.21136 1.21138 0.91885 0.92187 0.92337 0.90770 0.90655 0.87964 0.87756 0.89157 0.90778 0.76734 0.91921 0.91924 0.95237 0.91479 0.93404 0.93394 0.91454 0.95276 0.96379 0.96377 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.59 37.16 0.32 -1.17 16 2 C -0.08 -0.77 2.41 -90.18 -0.22 -0.99 16 3 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 4 C -0.08 -0.67 5.46 -27.96 -0.15 -0.82 16 5 C -0.16 -1.34 9.81 -35.90 -0.35 -1.69 16 6 C -0.15 -1.33 9.81 -35.90 -0.35 -1.68 16 7 C -0.08 -0.84 5.29 -28.18 -0.15 -0.99 16 8 C -0.10 -1.11 2.18 -91.56 -0.20 -1.31 16 9 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 10 C 0.51 7.52 5.52 -10.99 -0.06 7.46 16 11 O -0.55 -10.21 16.09 5.56 0.09 -10.12 16 12 N -0.72 -10.24 4.61 -60.29 -0.28 -10.52 16 13 C 0.13 2.24 4.56 -4.04 -0.02 2.22 16 14 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 15 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 16 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 17 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 18 C -0.51 -13.48 7.65 -34.44 -0.26 -13.75 16 19 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 22 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 26 H 0.06 0.75 7.16 -51.93 -0.37 0.38 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 31 H 0.10 0.70 8.06 -52.48 -0.42 0.28 16 32 H 0.10 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.09 1.11 7.48 -51.93 -0.39 0.73 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 4.82 6.13 -40.82 -0.25 4.57 16 36 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 39 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 43 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -30.30 355.82 -8.43 -38.73 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.18 Total: 1.83 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -1.14 Total: -15.73 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.46 Total: -36.18 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.30 -8.43 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346023563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.893 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds