Wall clock time and date at job start Fri Apr 10 2020 17:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.80882 * 2 1 4 4 C 1.53440 * 109.94173 * 239.37824 * 2 1 3 5 5 C 1.50074 * 110.26360 * 190.99505 * 4 2 1 6 6 C 1.29446 * 124.07638 * 17.12346 * 5 4 2 7 7 C 1.50066 * 124.07428 * 359.50877 * 6 5 4 8 8 C 1.53026 * 110.14869 * 17.13215 * 7 6 5 9 9 H 1.08998 * 109.64275 * 70.24507 * 8 7 6 10 10 C 1.50695 * 109.64177 * 190.66593 * 8 7 6 11 11 O 1.21277 * 120.00103 * 35.95782 * 10 8 7 12 12 N 1.34777 * 119.99737 * 215.95669 * 10 8 7 13 13 C 1.46500 * 119.99995 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.47122 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47167 * 299.99629 * 14 13 12 16 16 C 1.53000 * 109.47263 * 59.99877 * 14 13 12 17 17 C 1.53005 * 109.46969 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.47015 * 179.97438 * 17 14 13 19 19 H 1.08001 * 120.00367 * 0.02562 * 18 17 14 20 20 C 1.37882 * 119.99875 * 180.02562 * 18 17 14 21 21 N 1.31516 * 120.00083 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99885 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46965 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47384 * 119.99612 * 22 20 18 25 25 H 1.48503 * 109.46566 * 239.99362 * 22 20 18 26 26 H 1.09000 * 109.47310 * 305.37637 * 1 2 3 27 27 H 1.08996 * 109.46753 * 65.38121 * 1 2 3 28 28 H 1.09002 * 109.46725 * 185.38025 * 1 2 3 29 29 H 1.09001 * 109.32100 * 70.74468 * 4 2 1 30 30 H 1.08996 * 109.16663 * 311.14765 * 4 2 1 31 31 H 1.08004 * 117.96193 * 197.10758 * 5 4 2 32 32 H 1.08000 * 117.95790 * 179.52966 * 6 5 4 33 33 H 1.08999 * 109.36184 * 256.92167 * 7 6 5 34 34 H 1.09002 * 109.24158 * 137.26380 * 7 6 5 35 35 H 0.97007 * 120.00249 * 0.02562 * 12 10 8 36 36 H 1.09009 * 109.46808 * 299.99771 * 13 12 10 37 37 H 1.08997 * 109.47074 * 59.99900 * 13 12 10 38 38 H 1.08998 * 109.46885 * 60.00072 * 15 14 13 39 39 H 1.09000 * 109.47368 * 180.02562 * 15 14 13 40 40 H 1.08997 * 109.47177 * 300.00397 * 15 14 13 41 41 H 1.08998 * 109.47274 * 60.00422 * 16 14 13 42 42 H 1.09000 * 109.46718 * 179.97438 * 16 14 13 43 43 H 1.08998 * 109.47026 * 300.00073 * 16 14 13 44 44 H 1.08998 * 109.47650 * 300.00172 * 17 14 13 45 45 H 1.09002 * 109.47309 * 60.00109 * 17 14 13 46 46 H 0.96994 * 120.00022 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8994 1.0255 0.0000 4 6 2.0534 -0.7347 -1.2413 5 6 3.5298 -0.9746 -1.1193 6 6 4.1864 -0.9051 -0.0059 7 6 3.5648 -0.5646 1.3169 8 6 2.0456 -0.7338 1.2445 9 1 1.7978 -1.7929 1.1743 10 6 1.4112 -0.1458 2.4785 11 8 1.8770 0.8543 2.9820 12 7 0.3259 -0.7314 3.0224 13 6 -0.2912 -0.1595 4.2217 14 6 -1.4960 -1.0096 4.6301 15 6 -2.5169 -1.0281 3.4906 16 6 -1.0354 -2.4385 4.9254 17 6 -2.1402 -0.4127 5.8829 18 6 -3.3272 -1.2497 6.2848 19 1 -3.5952 -2.1205 5.7049 20 6 -4.0713 -0.9036 7.3929 21 7 -3.7448 0.1565 8.0994 22 14 -5.5423 -1.9415 7.8914 23 1 -5.6965 -3.0710 6.9396 24 1 -5.3312 -2.4736 9.2616 25 1 -6.7688 -1.1046 7.8689 26 1 -0.3634 0.5950 0.8379 27 1 -0.3633 0.4281 -0.9342 28 1 -0.3633 -1.0232 0.0964 29 1 1.8575 -0.1307 -2.1272 30 1 1.5386 -1.6909 -1.3347 31 1 4.0787 -1.2207 -2.0164 32 1 5.2476 -1.1042 -0.0306 33 1 3.8016 0.4683 1.5723 34 1 3.9660 -1.2275 2.0835 35 1 -0.0465 -1.5316 2.6199 36 1 0.4360 -0.1468 5.0337 37 1 -0.6190 0.8585 4.0114 38 1 -2.0577 -1.4535 2.5983 39 1 -3.3754 -1.6333 3.7817 40 1 -2.8450 -0.0102 3.2802 41 1 -0.3082 -2.4253 5.7372 42 1 -1.8937 -3.0439 5.2167 43 1 -0.5763 -2.8639 4.0331 44 1 -1.4128 -0.3998 6.6946 45 1 -2.4683 0.6053 5.6730 46 1 -4.2684 0.4001 8.8786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346023563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:00 Heat of formation + Delta-G solvation = -78.576638 kcal Electronic energy + Delta-G solvation = -22557.896489 eV Core-core repulsion = 19445.392425 eV Total energy + Delta-G solvation = -3112.504064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.45315 -39.30009 -38.24584 -35.26279 -34.09690 -33.46810 -31.97222 -29.12475 -27.97381 -27.89912 -27.41823 -25.34180 -24.12436 -22.38612 -21.22871 -19.79950 -18.98871 -18.37737 -17.98754 -16.91364 -16.59572 -16.43358 -16.13433 -15.45852 -15.28099 -14.90772 -14.64011 -14.42602 -14.33430 -14.01568 -13.93605 -13.68317 -13.58996 -13.03740 -13.01453 -12.88389 -12.71849 -12.67758 -12.58344 -12.34174 -12.22881 -11.94817 -11.72078 -11.57774 -11.52837 -11.27605 -11.09394 -10.87518 -10.57529 -10.52483 -10.04014 -9.82358 -8.14205 -6.22089 1.41750 1.42779 1.44118 1.54568 1.67139 2.24692 2.45187 3.20428 3.60076 3.73075 3.76471 3.97746 4.08513 4.17138 4.21810 4.23759 4.37125 4.41567 4.55785 4.60244 4.69607 4.72394 4.79367 4.81747 4.89211 4.96720 4.98714 5.02292 5.11152 5.12987 5.15947 5.21004 5.29604 5.40982 5.42145 5.49113 5.50459 5.54315 5.58492 5.79562 5.80589 5.90077 6.08903 6.30249 6.62432 6.93620 7.30263 7.45890 8.98645 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.037355 B = 0.003380 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.381671 B = 8282.250664 C = 8511.252975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.076 4.076 3 H 0.058 0.942 4 C -0.081 4.081 5 C -0.154 4.154 6 C -0.163 4.163 7 C -0.079 4.079 8 C -0.094 4.094 9 H 0.114 0.886 10 C 0.514 3.486 11 O -0.593 6.593 12 N -0.706 5.706 13 C 0.141 3.859 14 C -0.064 4.064 15 C -0.120 4.120 16 C -0.121 4.121 17 C 0.040 3.960 18 C -0.512 4.512 19 H 0.074 0.926 20 C -0.006 4.006 21 N -0.940 5.940 22 Si 0.959 3.041 23 H -0.255 1.255 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.412 0.588 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.056 0.944 43 H 0.070 0.930 44 H -0.016 1.016 45 H -0.016 1.016 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.354 -6.968 -21.210 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.095 4.095 3 H 0.076 0.924 4 C -0.118 4.118 5 C -0.172 4.172 6 C -0.181 4.181 7 C -0.116 4.116 8 C -0.115 4.115 9 H 0.132 0.868 10 C 0.302 3.698 11 O -0.473 6.473 12 N -0.358 5.358 13 C 0.017 3.983 14 C -0.065 4.065 15 C -0.177 4.177 16 C -0.179 4.179 17 C 0.002 3.998 18 C -0.550 4.550 19 H 0.092 0.908 20 C -0.203 4.203 21 N -0.581 5.581 22 Si 0.784 3.216 23 H -0.179 1.179 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.251 0.749 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.002 0.998 45 H 0.003 0.997 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.619 -6.189 -20.709 24.539 hybrid contribution -0.861 0.025 1.153 1.439 sum 10.758 -6.164 -19.556 23.155 Atomic orbital electron populations 1.21922 0.93973 1.02983 1.02085 1.21170 0.96181 0.98902 0.93255 0.92381 1.20624 0.93011 1.01385 0.96793 1.22285 0.96513 1.00338 0.98101 1.22034 1.00392 1.02100 0.93609 1.20306 0.92308 1.01999 0.97022 1.21470 0.96274 1.02120 0.91670 0.86754 1.21208 0.79689 0.83431 0.85461 1.90664 1.64261 1.27725 1.64696 1.46074 1.29807 1.31060 1.28874 1.21182 0.94193 0.96381 0.86556 1.20703 0.93397 0.95785 0.96586 1.21680 0.98590 1.01032 0.96423 1.21693 1.00654 0.94921 1.00593 1.18973 0.94492 0.94581 0.91726 1.21630 1.11649 1.11288 1.10398 0.90791 1.25967 1.00940 0.96438 0.96967 1.70132 1.41514 1.27693 1.18766 0.85485 0.78921 0.79014 0.78158 1.17879 1.21115 1.21093 0.94673 0.90827 0.90533 0.89377 0.88807 0.85971 0.86581 0.91794 0.90758 0.74937 0.93949 0.93935 0.91007 0.92554 0.94540 0.94565 0.92499 0.91079 0.99777 0.99748 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.59 71.98 0.62 -1.94 16 2 C -0.08 -1.34 2.41 -10.51 -0.03 -1.37 16 3 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 4 C -0.08 -0.98 5.46 29.80 0.16 -0.82 16 5 C -0.15 -2.01 9.81 27.04 0.27 -1.75 16 6 C -0.16 -2.56 9.81 27.03 0.27 -2.30 16 7 C -0.08 -1.62 5.29 29.66 0.16 -1.46 16 8 C -0.09 -1.89 2.18 -11.40 -0.02 -1.91 16 9 H 0.11 1.71 8.08 -2.39 -0.02 1.69 16 10 C 0.51 14.83 5.52 87.66 0.48 15.31 16 11 O -0.59 -22.97 16.09 -3.02 -0.05 -23.01 16 12 N -0.71 -19.23 4.61 -463.06 -2.14 -21.37 16 13 C 0.14 5.09 4.56 86.38 0.39 5.48 16 14 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16 15 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 16 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 17 C 0.04 2.04 4.04 29.85 0.12 2.16 16 18 C -0.51 -27.35 7.65 25.60 0.20 -27.15 16 19 H 0.07 3.68 5.68 -2.91 -0.02 3.67 16 20 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 21 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 22 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H 0.03 0.79 7.16 -2.39 -0.02 0.77 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.86 8.11 -2.39 -0.02 0.85 16 31 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.12 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.06 1.64 7.48 -2.39 -0.02 1.62 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.41 8.59 6.13 -92.70 -0.57 8.03 16 36 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 39 H 0.06 1.98 6.62 -2.39 -0.02 1.97 16 40 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 2.01 6.62 -2.39 -0.02 2.00 16 43 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 44 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 45 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 46 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -69.41 355.82 4.70 -64.71 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.37 Total: 16.15 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 4.21 Total: -24.89 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -1.85 Total: -78.49 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.01 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -69.41 4.70 -64.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346023563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.862 kcal (2) G-P(sol) polarization free energy of solvation -69.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds