Wall clock time and date at job start Fri Apr 10 2020 17:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30834 * 125.89652 * 2 1 4 4 N 1.40085 * 108.20502 * 179.97438 * 3 2 1 5 5 C 1.46499 * 126.03983 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92772 * 359.97438 * 4 3 2 7 7 C 1.35319 * 107.74072 * 359.75647 * 6 4 3 8 8 C 1.50698 * 126.03879 * 180.27586 * 7 6 4 9 9 H 1.09003 * 109.46970 * 220.13830 * 8 7 6 10 10 C 1.52998 * 109.47479 * 100.13706 * 8 7 6 11 11 N 1.46902 * 109.47453 * 340.13410 * 8 7 6 12 12 C 1.46894 * 111.00293 * 205.00656 * 11 8 7 13 13 C 1.53005 * 109.46905 * 180.02562 * 12 11 8 14 14 C 1.52995 * 109.47103 * 299.99533 * 13 12 11 15 15 C 1.52998 * 109.47107 * 59.99723 * 13 12 11 16 16 C 1.52996 * 109.46967 * 179.97438 * 13 12 11 17 17 C 1.50699 * 109.47193 * 179.97438 * 16 13 12 18 18 H 1.07995 * 120.00295 * 0.02562 * 17 16 13 19 19 C 1.37882 * 120.00257 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99973 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00082 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47424 * 89.99519 * 21 19 17 23 23 H 1.48506 * 109.47183 * 209.99827 * 21 19 17 24 24 H 1.48503 * 109.47340 * 329.99444 * 21 19 17 25 25 H 1.09002 * 109.47152 * 90.02599 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.02699 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.02680 * 1 2 3 28 28 H 1.08992 * 109.47808 * 89.97207 * 5 4 3 29 29 H 1.09003 * 109.47286 * 209.97479 * 5 4 3 30 30 H 1.09002 * 109.46991 * 329.96604 * 5 4 3 31 31 H 1.07999 * 126.13039 * 179.97438 * 6 4 3 32 32 H 1.09003 * 109.47296 * 180.02562 * 10 8 7 33 33 H 1.08995 * 109.46832 * 299.99973 * 10 8 7 34 34 H 1.08998 * 109.47156 * 59.99691 * 10 8 7 35 35 H 1.00904 * 110.99556 * 328.95837 * 11 8 7 36 36 H 1.09005 * 109.46710 * 299.99533 * 12 11 8 37 37 H 1.08991 * 109.47568 * 59.99945 * 12 11 8 38 38 H 1.09003 * 109.46993 * 59.99728 * 14 13 12 39 39 H 1.09002 * 109.47296 * 180.02562 * 14 13 12 40 40 H 1.09004 * 109.47220 * 300.00377 * 14 13 12 41 41 H 1.09000 * 109.47170 * 60.00115 * 15 13 12 42 42 H 1.09002 * 109.46781 * 180.02562 * 15 13 12 43 43 H 1.08997 * 109.47127 * 299.99883 * 15 13 12 44 44 H 1.09000 * 109.47328 * 299.99896 * 16 13 12 45 45 H 1.09002 * 109.47661 * 59.99718 * 16 13 12 46 46 H 0.96993 * 120.00340 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5008 0.0013 6 6 3.6143 -0.7153 0.0015 7 6 2.3272 -1.1330 0.0070 8 6 1.8600 -2.5657 0.0158 9 1 0.9987 -2.6710 -0.6440 10 6 1.4641 -2.9644 1.4388 11 7 2.9453 -3.4376 -0.4530 12 6 2.4123 -4.6843 -1.0182 13 6 3.5698 -5.5645 -1.4938 14 6 4.3698 -4.8203 -2.5648 15 6 4.4826 -5.8904 -0.3100 16 6 3.0147 -6.8633 -2.0819 17 6 4.1548 -7.7300 -2.5510 18 1 5.1734 -7.3889 -2.4403 19 6 3.8974 -8.9586 -3.1214 20 7 2.6569 -9.3744 -3.2557 21 14 5.3106 -10.0332 -3.7022 22 1 5.7483 -10.9178 -2.5926 23 1 4.8625 -10.8629 -4.8494 24 1 6.4445 -9.1732 -4.1264 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 0.8902 0.5134 27 1 -0.3633 -0.8898 0.5143 28 1 5.0821 1.7160 1.0290 29 1 5.6097 0.9981 -0.5118 30 1 4.5567 2.4331 -0.5130 31 1 4.4892 -1.3485 0.0018 32 1 1.1266 -4.0008 1.4452 33 1 2.3253 -2.8591 2.0985 34 1 0.6587 -2.3175 1.7867 35 1 3.5306 -2.9589 -1.1212 36 1 1.8427 -5.2148 -0.2550 37 1 1.7617 -4.4521 -1.8613 38 1 4.7653 -3.8951 -2.1455 39 1 5.1942 -5.4475 -2.9040 40 1 3.7195 -4.5880 -3.4082 41 1 3.9126 -6.4207 0.4530 42 1 5.3075 -6.5171 -0.6490 43 1 4.8781 -4.9654 0.1093 44 1 2.4450 -7.3934 -1.3186 45 1 2.3641 -6.6315 -2.9252 46 1 2.4758 -10.2388 -3.6567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348248110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:16 Heat of formation + Delta-G solvation = 55.398957 kcal Electronic energy + Delta-G solvation = -22284.790628 eV Core-core repulsion = 19210.388932 eV Total energy + Delta-G solvation = -3074.401695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37747 -37.81179 -35.44070 -33.80795 -32.33673 -30.28080 -29.93629 -28.59263 -26.84516 -26.31615 -25.77939 -24.95797 -22.79828 -21.95004 -19.99918 -19.49953 -17.93331 -16.76310 -16.16878 -15.73138 -15.47677 -14.60413 -14.54908 -14.07306 -13.91243 -13.69824 -13.39759 -13.30049 -12.92129 -12.72175 -12.51251 -12.36617 -12.19765 -11.97539 -11.95899 -11.83974 -11.58244 -11.14101 -10.91266 -10.79861 -10.71303 -10.47925 -10.46911 -10.21047 -10.08590 -9.64558 -9.27446 -8.98576 -8.80523 -8.37350 -8.29439 -8.01631 -5.94058 -3.94010 1.81853 2.41470 2.68316 3.34526 3.41094 3.43557 4.31506 4.45588 4.54902 4.81622 4.88423 4.91947 5.09819 5.15748 5.22330 5.41749 5.48941 5.52612 5.59444 5.71452 5.75093 5.83969 5.88062 5.92819 6.00340 6.06703 6.15454 6.32932 6.39864 6.43224 6.56588 6.60944 6.69118 6.83180 6.85905 6.94493 7.24259 7.28407 7.30039 7.48383 7.65478 7.72783 7.77681 7.89703 8.06632 8.51140 9.11515 9.68610 11.17643 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.028696 B = 0.003432 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.524550 B = 8156.636448 C = 8659.936615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.080 3.920 3 N -0.303 5.303 4 N -0.381 5.381 5 C 0.104 3.896 6 C 0.069 3.931 7 C -0.232 4.232 8 C 0.161 3.839 9 H 0.046 0.954 10 C -0.131 4.131 11 N -0.682 5.682 12 C 0.070 3.930 13 C -0.058 4.058 14 C -0.128 4.128 15 C -0.115 4.115 16 C 0.034 3.966 17 C -0.506 4.506 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.178 0.822 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.336 0.664 36 H 0.067 0.933 37 H 0.023 0.977 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.015 0.985 45 H 0.012 0.988 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 19.628 7.484 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 N -0.126 5.126 4 N -0.163 5.163 5 C -0.037 4.037 6 C -0.077 4.077 7 C -0.244 4.244 8 C 0.050 3.950 9 H 0.064 0.936 10 C -0.189 4.189 11 N -0.314 5.314 12 C -0.058 4.058 13 C -0.058 4.058 14 C -0.185 4.185 15 C -0.172 4.172 16 C -0.004 4.004 17 C -0.545 4.545 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.200 1.200 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.195 0.805 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.156 0.844 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.033 0.967 45 H 0.031 0.969 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.484 20.588 8.034 22.105 hybrid contribution 0.498 -1.275 -1.247 1.852 sum 0.982 19.312 6.787 20.494 Atomic orbital electron populations 1.20206 0.86874 1.03245 1.02965 1.22192 0.96786 0.90245 0.99493 1.77248 0.86533 1.22771 1.26066 1.48317 1.05367 1.04863 1.57746 1.21812 0.83792 0.94934 1.03187 1.22342 0.99657 0.84353 1.01351 1.20081 0.91969 0.95920 1.16414 1.19708 0.92876 0.85837 0.96554 0.93593 1.21740 1.00696 1.00752 0.95697 1.60694 1.20463 1.06245 1.44007 1.22147 0.96998 0.89840 0.96860 1.20619 0.93936 0.96321 0.94955 1.21762 1.00578 0.98231 0.97969 1.21586 0.99292 0.99486 0.96836 1.19118 0.96021 0.89829 0.95403 1.21244 0.93142 1.01519 1.38547 0.92333 1.25016 0.95254 0.98018 0.96321 1.69964 1.18266 1.20286 1.45237 0.86675 0.82777 0.80699 0.78318 1.20796 1.21422 1.19981 0.90597 0.91077 0.90253 0.90951 0.89432 0.89557 0.80525 0.92464 0.92334 0.93169 0.84401 0.91459 0.95884 0.94989 0.91791 0.94145 0.94168 0.92841 0.93959 0.96678 0.96946 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.26 36.01 0.37 -0.34 16 2 C 0.08 1.01 7.22 -82.41 -0.59 0.41 16 3 N -0.30 -4.08 12.58 33.67 0.42 -3.66 16 4 N -0.38 -4.35 4.01 -68.16 -0.27 -4.62 16 5 C 0.10 0.72 11.47 59.85 0.69 1.41 16 6 C 0.07 0.80 10.37 -17.22 -0.18 0.62 16 7 C -0.23 -2.93 5.13 -105.05 -0.54 -3.47 16 8 C 0.16 2.08 2.71 -68.87 -0.19 1.89 16 9 H 0.05 0.62 7.80 -51.93 -0.40 0.21 16 10 C -0.13 -1.60 9.40 37.16 0.35 -1.25 16 11 N -0.68 -9.70 5.22 -107.95 -0.56 -10.26 16 12 C 0.07 1.20 4.45 -3.82 -0.02 1.18 16 13 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 14 C -0.13 -2.36 7.89 37.16 0.29 -2.06 16 15 C -0.11 -2.18 8.06 37.16 0.30 -1.88 16 16 C 0.03 0.85 4.04 -27.89 -0.11 0.73 16 17 C -0.51 -13.80 7.65 -34.44 -0.26 -14.06 16 18 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 21 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.68 7.08 -51.93 -0.37 0.32 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.18 1.76 7.64 -52.49 -0.40 1.35 16 32 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.54 7.27 -51.93 -0.38 0.16 16 35 H 0.34 4.67 5.46 -39.29 -0.21 4.45 16 36 H 0.07 1.19 7.44 -51.93 -0.39 0.80 16 37 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 38 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 39 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 43 H 0.04 0.71 7.60 -51.93 -0.39 0.32 16 44 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -31.53 361.67 -7.37 -38.90 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -8.04 Total: 0.37 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -0.08 Total: -16.61 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.32 Total: -44.66 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.53 -7.37 -38.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348248110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.302 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds