Wall clock time and date at job start Fri Apr 10 2020 17:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30834 * 125.89652 * 2 1 4 4 N 1.40085 * 108.20502 * 179.97438 * 3 2 1 5 5 C 1.46499 * 126.03983 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92772 * 359.97438 * 4 3 2 7 7 C 1.35319 * 107.74072 * 359.75647 * 6 4 3 8 8 C 1.50698 * 126.03879 * 180.27586 * 7 6 4 9 9 H 1.09003 * 109.46970 * 220.13830 * 8 7 6 10 10 C 1.52998 * 109.47479 * 100.13706 * 8 7 6 11 11 N 1.46902 * 109.47453 * 340.13410 * 8 7 6 12 12 C 1.46894 * 111.00293 * 205.00656 * 11 8 7 13 13 C 1.53005 * 109.46905 * 180.02562 * 12 11 8 14 14 C 1.52995 * 109.47103 * 299.99533 * 13 12 11 15 15 C 1.52998 * 109.47107 * 59.99723 * 13 12 11 16 16 C 1.52996 * 109.46967 * 179.97438 * 13 12 11 17 17 C 1.50699 * 109.47193 * 179.97438 * 16 13 12 18 18 H 1.07995 * 120.00295 * 0.02562 * 17 16 13 19 19 C 1.37882 * 120.00257 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99973 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00082 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47424 * 89.99519 * 21 19 17 23 23 H 1.48506 * 109.47183 * 209.99827 * 21 19 17 24 24 H 1.48503 * 109.47340 * 329.99444 * 21 19 17 25 25 H 1.09002 * 109.47152 * 90.02599 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.02699 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.02680 * 1 2 3 28 28 H 1.08992 * 109.47808 * 89.97207 * 5 4 3 29 29 H 1.09003 * 109.47286 * 209.97479 * 5 4 3 30 30 H 1.09002 * 109.46991 * 329.96604 * 5 4 3 31 31 H 1.07999 * 126.13039 * 179.97438 * 6 4 3 32 32 H 1.09003 * 109.47296 * 180.02562 * 10 8 7 33 33 H 1.08995 * 109.46832 * 299.99973 * 10 8 7 34 34 H 1.08998 * 109.47156 * 59.99691 * 10 8 7 35 35 H 1.00904 * 110.99556 * 328.95837 * 11 8 7 36 36 H 1.09005 * 109.46710 * 299.99533 * 12 11 8 37 37 H 1.08991 * 109.47568 * 59.99945 * 12 11 8 38 38 H 1.09003 * 109.46993 * 59.99728 * 14 13 12 39 39 H 1.09002 * 109.47296 * 180.02562 * 14 13 12 40 40 H 1.09004 * 109.47220 * 300.00377 * 14 13 12 41 41 H 1.09000 * 109.47170 * 60.00115 * 15 13 12 42 42 H 1.09002 * 109.46781 * 180.02562 * 15 13 12 43 43 H 1.08997 * 109.47127 * 299.99883 * 15 13 12 44 44 H 1.09000 * 109.47328 * 299.99896 * 16 13 12 45 45 H 1.09002 * 109.47661 * 59.99718 * 16 13 12 46 46 H 0.96993 * 120.00340 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5008 0.0013 6 6 3.6143 -0.7153 0.0015 7 6 2.3272 -1.1330 0.0070 8 6 1.8600 -2.5657 0.0158 9 1 0.9987 -2.6710 -0.6440 10 6 1.4641 -2.9644 1.4388 11 7 2.9453 -3.4376 -0.4530 12 6 2.4123 -4.6843 -1.0182 13 6 3.5698 -5.5645 -1.4938 14 6 4.3698 -4.8203 -2.5648 15 6 4.4826 -5.8904 -0.3100 16 6 3.0147 -6.8633 -2.0819 17 6 4.1548 -7.7300 -2.5510 18 1 5.1734 -7.3889 -2.4403 19 6 3.8974 -8.9586 -3.1214 20 7 2.6569 -9.3744 -3.2557 21 14 5.3106 -10.0332 -3.7022 22 1 5.7483 -10.9178 -2.5926 23 1 4.8625 -10.8629 -4.8494 24 1 6.4445 -9.1732 -4.1264 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 0.8902 0.5134 27 1 -0.3633 -0.8898 0.5143 28 1 5.0821 1.7160 1.0290 29 1 5.6097 0.9981 -0.5118 30 1 4.5567 2.4331 -0.5130 31 1 4.4892 -1.3485 0.0018 32 1 1.1266 -4.0008 1.4452 33 1 2.3253 -2.8591 2.0985 34 1 0.6587 -2.3175 1.7867 35 1 3.5306 -2.9589 -1.1212 36 1 1.8427 -5.2148 -0.2550 37 1 1.7617 -4.4521 -1.8613 38 1 4.7653 -3.8951 -2.1455 39 1 5.1942 -5.4475 -2.9040 40 1 3.7195 -4.5880 -3.4082 41 1 3.9126 -6.4207 0.4530 42 1 5.3075 -6.5171 -0.6490 43 1 4.8781 -4.9654 0.1093 44 1 2.4450 -7.3934 -1.3186 45 1 2.3641 -6.6315 -2.9252 46 1 2.4758 -10.2388 -3.6567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348248110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:16 Heat of formation + Delta-G solvation = 36.545239 kcal Electronic energy + Delta-G solvation = -22285.608186 eV Core-core repulsion = 19210.388932 eV Total energy + Delta-G solvation = -3075.219254 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.24882 -39.25549 -36.73447 -34.81074 -34.23241 -31.42896 -30.75256 -29.55234 -28.75867 -27.84407 -26.86178 -26.16258 -24.46855 -23.06568 -20.97025 -20.45495 -19.45549 -18.30128 -17.69619 -16.73364 -16.53419 -16.34929 -15.62496 -15.47854 -14.99807 -14.76990 -14.59659 -14.34810 -14.19336 -13.85574 -13.81711 -13.49718 -13.44070 -13.18315 -12.97841 -12.86995 -12.77483 -12.69997 -12.52144 -12.45060 -12.20611 -12.13152 -11.90622 -11.83086 -11.44829 -11.31254 -10.80733 -10.68119 -10.47872 -10.13894 -9.34073 -9.15805 -8.11459 -6.18254 0.95646 1.42561 1.42978 1.53361 1.69888 1.77234 2.45701 3.22539 3.28934 3.61359 3.99739 4.10784 4.24419 4.25752 4.28791 4.44671 4.45172 4.47663 4.56508 4.63846 4.70334 4.79271 4.80690 4.84201 4.94375 4.97739 5.01424 5.10553 5.11825 5.15140 5.20883 5.26604 5.30714 5.45974 5.56022 5.58444 5.63719 5.70071 5.75116 5.92619 5.96506 6.16846 6.21298 6.40954 6.59558 6.79277 6.97363 7.48981 9.00952 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.028696 B = 0.003432 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.524550 B = 8156.636448 C = 8659.936615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.069 3.931 3 N -0.333 5.333 4 N -0.382 5.382 5 C 0.094 3.906 6 C 0.071 3.929 7 C -0.250 4.250 8 C 0.167 3.833 9 H 0.040 0.960 10 C -0.126 4.126 11 N -0.671 5.671 12 C 0.084 3.916 13 C -0.054 4.054 14 C -0.121 4.121 15 C -0.105 4.105 16 C 0.040 3.960 17 C -0.513 4.513 18 H 0.067 0.933 19 C -0.005 4.005 20 N -0.939 5.939 21 Si 0.955 3.045 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.262 1.262 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.196 0.804 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.342 0.658 36 H 0.059 0.941 37 H 0.014 0.986 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.037 0.963 43 H 0.070 0.930 44 H -0.016 1.016 45 H -0.018 1.018 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.073 20.984 7.935 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 N -0.157 5.157 4 N -0.163 5.163 5 C -0.045 4.045 6 C -0.076 4.076 7 C -0.262 4.262 8 C 0.056 3.944 9 H 0.058 0.942 10 C -0.184 4.184 11 N -0.304 5.304 12 C -0.046 4.046 13 C -0.054 4.054 14 C -0.179 4.179 15 C -0.163 4.163 16 C 0.002 3.998 17 C -0.551 4.551 18 H 0.085 0.915 19 C -0.202 4.202 20 N -0.580 5.580 21 Si 0.781 3.219 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.186 1.186 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.130 0.870 30 H 0.108 0.892 31 H 0.213 0.787 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.162 0.838 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.002 0.998 45 H 0.000 1.000 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.297 21.979 8.494 23.675 hybrid contribution -0.063 -1.633 -1.364 2.129 sum 2.234 20.346 7.130 21.674 Atomic orbital electron populations 1.20288 0.85491 1.03986 1.03536 1.22584 0.97941 0.90072 0.99113 1.77200 0.87723 1.23568 1.27246 1.48676 1.05659 1.05315 1.56679 1.22163 0.82972 0.94907 1.04508 1.22641 0.99890 0.84787 1.00293 1.20075 0.92659 0.95452 1.18034 1.19638 0.92122 0.86017 0.96609 0.94186 1.21699 1.01017 1.00476 0.95224 1.60640 1.20833 1.05483 1.43460 1.21845 0.95640 0.90778 0.96320 1.20478 0.95012 0.94325 0.95613 1.21679 0.99562 0.99276 0.97361 1.21490 0.98284 1.00409 0.96076 1.19006 0.94914 0.92310 0.93550 1.21635 0.93972 1.01759 1.37703 0.91518 1.25921 0.97779 0.99747 0.96722 1.70110 1.20556 1.20835 1.46508 0.85587 0.79729 0.78827 0.77766 1.20151 1.21388 1.18602 0.90067 0.90376 0.89462 0.89656 0.87025 0.89174 0.78715 0.93394 0.92667 0.91732 0.83824 0.92299 0.96794 0.91297 0.93468 0.94817 0.95168 0.94401 0.91085 0.99778 0.99971 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 10.26 71.24 0.73 -0.62 16 2 C 0.07 1.65 7.22 43.10 0.31 1.96 16 3 N -0.33 -8.51 12.58 -47.38 -0.60 -9.11 16 4 N -0.38 -7.88 4.01 -369.57 -1.48 -9.36 16 5 C 0.09 1.06 11.47 127.77 1.47 2.52 16 6 C 0.07 1.47 10.37 83.54 0.87 2.33 16 7 C -0.25 -5.87 5.13 -20.14 -0.10 -5.97 16 8 C 0.17 4.06 2.71 44.17 0.12 4.18 16 9 H 0.04 1.04 7.80 -2.39 -0.02 1.02 16 10 C -0.13 -2.90 9.40 71.98 0.68 -2.23 16 11 N -0.67 -17.82 5.22 -495.46 -2.59 -20.41 16 12 C 0.08 2.82 4.45 86.31 0.38 3.20 16 13 C -0.05 -2.10 0.60 -52.18 -0.03 -2.13 16 14 C -0.12 -4.28 7.89 71.98 0.57 -3.72 16 15 C -0.11 -3.87 8.06 71.98 0.58 -3.29 16 16 C 0.04 2.06 4.04 29.85 0.12 2.18 16 17 C -0.51 -28.24 7.65 25.60 0.20 -28.04 16 18 H 0.07 3.51 5.68 -2.91 -0.02 3.49 16 19 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 20 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 21 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.09 1.39 7.08 -2.38 -0.02 1.38 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.20 3.18 7.64 -2.91 -0.02 3.16 16 32 H 0.05 1.18 7.45 -2.39 -0.02 1.16 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.28 7.27 -2.39 -0.02 1.27 16 35 H 0.34 8.50 5.46 -89.69 -0.49 8.01 16 36 H 0.06 2.09 7.44 -2.38 -0.02 2.07 16 37 H 0.01 0.49 8.05 -2.39 -0.02 0.47 16 38 H 0.07 1.91 6.57 -2.39 -0.02 1.89 16 39 H 0.05 1.81 6.62 -2.39 -0.02 1.80 16 40 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.04 1.49 6.62 -2.39 -0.02 1.47 16 43 H 0.07 2.19 7.60 -2.39 -0.02 2.17 16 44 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 45 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 46 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -68.61 361.67 4.45 -64.16 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.45 Total: 15.05 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 6.35 Total: -29.45 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -4.38 Total: -96.13 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -68.61 4.45 -64.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348248110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.708 kcal (2) G-P(sol) polarization free energy of solvation -68.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds