Wall clock time and date at job start Fri Apr 10 2020 17:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 120.00060 * 2 1 4 4 C 1.50694 * 109.46958 * 269.99835 * 3 2 1 5 5 H 1.08000 * 120.00129 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99977 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00210 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 119.99970 * 359.97438 * 6 4 3 9 9 H 1.48495 * 109.47581 * 89.99915 * 8 6 4 10 10 H 1.48497 * 109.47017 * 210.00275 * 8 6 4 11 11 H 1.48505 * 109.46801 * 329.99822 * 8 6 4 12 12 C 1.34776 * 119.99773 * 179.97438 * 2 1 3 13 13 O 1.21277 * 119.99834 * 180.02562 * 12 2 1 14 14 C 1.50697 * 119.99862 * 0.02562 * 12 2 1 15 15 H 1.08996 * 109.47730 * 59.99710 * 14 12 2 16 16 C 1.52996 * 109.47240 * 299.99251 * 14 12 2 17 17 C 1.52997 * 109.47165 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.47592 * 60.00300 * 17 16 14 19 19 C 1.53006 * 109.46626 * 300.00035 * 18 17 16 20 20 H 1.09000 * 109.47050 * 299.99699 * 19 18 17 21 21 C 1.52999 * 109.46623 * 179.97438 * 19 18 17 22 22 C 1.53006 * 109.46997 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.46974 * 59.99987 * 22 21 19 24 24 C 1.53002 * 109.47092 * 300.00168 * 23 22 21 25 25 C 1.52996 * 109.47343 * 60.00063 * 24 23 22 26 26 H 1.09000 * 109.46870 * 59.99786 * 25 24 23 27 27 H 1.08996 * 109.47266 * 270.00662 * 1 2 3 28 28 H 1.09004 * 109.46901 * 30.00344 * 1 2 3 29 29 H 1.09000 * 109.47190 * 150.00108 * 1 2 3 30 30 H 1.08992 * 109.46947 * 29.99864 * 3 2 1 31 31 H 1.09006 * 109.46733 * 149.99591 * 3 2 1 32 32 H 0.97000 * 120.00330 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47054 * 300.00339 * 16 14 12 34 34 H 1.09001 * 109.46997 * 60.00072 * 16 14 12 35 35 H 1.09000 * 109.47140 * 299.99954 * 17 16 14 36 36 H 1.09002 * 109.47045 * 180.02562 * 17 16 14 37 37 H 1.08993 * 109.47839 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.47160 * 59.99666 * 18 17 16 39 39 H 1.09000 * 109.47486 * 299.99829 * 21 19 18 40 40 H 1.09001 * 109.47362 * 60.00551 * 21 19 18 41 41 H 1.09000 * 109.46866 * 300.00212 * 22 21 19 42 42 H 1.09001 * 109.47377 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.47045 * 180.02562 * 23 22 21 44 44 H 1.09000 * 109.47140 * 60.00393 * 23 22 21 45 45 H 1.09004 * 109.47059 * 299.99666 * 24 23 22 46 46 H 1.09004 * 109.46930 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.3467 3.2568 -2.9126 8 14 3.7339 3.9287 -0.2529 9 1 5.1070 3.5069 0.1238 10 1 3.7498 5.3553 -0.6648 11 1 2.8272 3.7596 0.9110 12 6 2.1389 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0010 14 6 1.3853 -2.4722 0.0005 15 1 0.7589 -2.5302 -0.8896 16 6 0.5053 -2.5531 1.2495 17 6 -0.2592 -3.8783 1.2498 18 6 0.7353 -5.0410 1.2506 19 6 1.6153 -4.9602 0.0016 20 1 0.9889 -5.0184 -0.8886 21 6 2.6102 -6.1225 0.0028 22 6 3.4898 -6.0421 -1.2466 23 6 4.2540 -4.7166 -1.2478 24 6 3.2590 -3.5543 -1.2489 25 6 2.3794 -3.6347 0.0004 26 1 3.0061 -3.5758 0.8903 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6085 2.0283 0.5138 31 1 3.1500 1.1384 0.5139 32 1 3.8242 4.0823 -3.0899 33 1 1.1318 -2.4952 2.1396 34 1 -0.2029 -1.7245 1.2491 35 1 -0.8856 -3.9366 0.3597 36 1 -0.8865 -3.9357 2.1394 37 1 0.1906 -5.9851 1.2504 38 1 1.3616 -4.9827 2.1408 39 1 3.2365 -6.0638 0.8929 40 1 2.0658 -7.0668 0.0031 41 1 2.8632 -6.1010 -2.1365 42 1 4.1984 -6.8704 -1.2460 43 1 4.8803 -4.6592 -2.1381 44 1 4.8806 -4.6577 -0.3579 45 1 2.6324 -3.6132 -2.1389 46 1 3.8035 -2.6100 -1.2502 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350074980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:19 Heat of formation + Delta-G solvation = -66.856988 kcal Electronic energy + Delta-G solvation = -23485.304789 eV Core-core repulsion = 20373.308927 eV Total energy + Delta-G solvation = -3111.995862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.47454 -38.24580 -35.56341 -34.83743 -32.64621 -32.08277 -29.99994 -29.18163 -27.86468 -26.04315 -23.85831 -22.63596 -22.28529 -21.38248 -19.86363 -19.60690 -18.34375 -16.91243 -16.28396 -15.56281 -14.93214 -14.79563 -14.61335 -14.25572 -14.12638 -13.97403 -13.81568 -13.14077 -13.06638 -12.46322 -12.41601 -12.27294 -12.04124 -11.92556 -11.54046 -11.44379 -11.41630 -11.21167 -11.05047 -10.89688 -10.78844 -10.61645 -10.50844 -10.48776 -10.20751 -10.14907 -9.86313 -9.55680 -9.50020 -8.63671 -8.57173 -7.63737 -6.07222 -4.05672 3.30106 3.36107 3.37930 3.41213 3.89431 4.40929 4.58180 4.69126 4.72593 4.98582 5.07708 5.14523 5.23861 5.25060 5.32697 5.35972 5.49176 5.49778 5.58728 5.64002 5.69319 5.72357 5.77521 5.80122 5.83048 5.88334 5.97046 6.03873 6.07657 6.11414 6.18543 6.22164 6.27853 6.33811 6.39556 6.42166 6.49933 6.73930 6.76072 6.90163 6.99563 7.39989 7.63329 8.31514 8.49503 8.95516 9.06486 9.53503 11.06256 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022834 B = 0.005044 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.967837 B = 5549.502329 C = 6319.461452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.598 5.598 3 C 0.215 3.785 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.876 3.124 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.512 3.488 13 O -0.536 6.536 14 C -0.101 4.101 15 H 0.089 0.911 16 C -0.123 4.123 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.082 4.082 20 H 0.068 0.932 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.129 4.129 25 C -0.054 4.054 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.051 0.949 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 -17.212 7.979 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.329 5.329 3 C 0.094 3.906 4 C -0.565 4.565 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.299 3.701 13 O -0.414 6.414 14 C -0.123 4.123 15 H 0.107 0.893 16 C -0.160 4.160 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.101 4.101 20 H 0.086 0.914 21 C -0.149 4.149 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.166 4.166 25 C -0.073 4.073 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.657 -17.032 7.872 19.909 hybrid contribution 0.240 0.729 0.470 0.899 sum -6.418 -16.303 8.341 19.405 Atomic orbital electron populations 1.21790 0.81338 1.02848 1.00165 1.47828 1.06080 1.07165 1.71873 1.19644 0.92436 0.80218 0.98274 1.21332 1.36825 1.07063 0.91303 0.90827 1.24858 0.95273 0.97360 0.95533 1.69898 1.41550 1.23604 1.18650 0.86849 0.80115 0.79737 0.82966 1.19932 1.21105 1.19110 1.20360 0.88005 0.84950 0.76785 1.90583 1.13979 1.86960 1.49842 1.21339 0.97634 0.93512 0.99783 0.89254 1.21796 0.98735 0.98303 0.97211 1.21508 0.97621 0.94462 1.01701 1.21605 0.97510 0.97901 0.98215 1.21198 0.96130 0.94727 0.98013 0.91374 1.21547 0.97458 0.97513 0.98334 1.21554 0.98485 0.97645 0.97991 1.21492 0.97961 0.94316 1.01539 1.21855 0.97822 1.00488 0.96405 1.20846 0.95143 0.91593 0.99668 0.90906 0.93474 0.90839 0.91933 0.95412 0.94616 0.92603 0.91750 0.90314 0.91944 0.92014 0.92306 0.92069 0.92142 0.92466 0.92295 0.92618 0.92406 0.92234 0.93059 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 8.80 59.85 0.53 1.80 16 2 N -0.60 -12.33 2.86 -182.95 -0.52 -12.85 16 3 C 0.22 5.31 4.23 -5.19 -0.02 5.28 16 4 C -0.53 -15.24 9.94 -34.44 -0.34 -15.59 16 5 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 8 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 12 C 0.51 10.34 6.78 -10.99 -0.07 10.26 16 13 O -0.54 -12.89 13.24 5.56 0.07 -12.81 16 14 C -0.10 -1.50 1.26 -91.80 -0.12 -1.62 16 15 H 0.09 1.28 7.40 -51.93 -0.38 0.89 16 16 C -0.12 -1.48 4.84 -26.73 -0.13 -1.61 16 17 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 18 C -0.11 -1.11 5.21 -26.73 -0.14 -1.25 16 19 C -0.08 -0.91 1.99 -90.62 -0.18 -1.09 16 20 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 21 C -0.11 -1.14 5.20 -26.73 -0.14 -1.28 16 22 C -0.12 -1.30 5.92 -26.73 -0.16 -1.45 16 23 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 24 C -0.13 -2.02 4.88 -26.73 -0.13 -2.15 16 25 C -0.05 -0.76 1.16 -90.64 -0.10 -0.86 16 26 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 27 H 0.05 0.61 6.95 -51.93 -0.36 0.24 16 28 H 0.07 1.18 8.07 -51.93 -0.42 0.77 16 29 H 0.06 0.82 6.01 -51.93 -0.31 0.51 16 30 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 31 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.89 4.53 -51.93 -0.24 0.66 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.10 1.94 5.52 -51.93 -0.29 1.66 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -32.55 338.56 -8.90 -41.44 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.23 Total: -0.35 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -1.42 Total: -10.50 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.25 Total: -39.99 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.07 Total: -12.81 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.55 -8.90 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350074980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.415 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds