Wall clock time and date at job start Fri Apr 10 2020 17:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 120.00060 * 2 1 4 4 C 1.50694 * 109.46958 * 269.99835 * 3 2 1 5 5 H 1.08000 * 120.00129 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99977 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00210 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 119.99970 * 359.97438 * 6 4 3 9 9 H 1.48495 * 109.47581 * 89.99915 * 8 6 4 10 10 H 1.48497 * 109.47017 * 210.00275 * 8 6 4 11 11 H 1.48505 * 109.46801 * 329.99822 * 8 6 4 12 12 C 1.34776 * 119.99773 * 179.97438 * 2 1 3 13 13 O 1.21277 * 119.99834 * 180.02562 * 12 2 1 14 14 C 1.50697 * 119.99862 * 0.02562 * 12 2 1 15 15 H 1.08996 * 109.47730 * 59.99710 * 14 12 2 16 16 C 1.52996 * 109.47240 * 299.99251 * 14 12 2 17 17 C 1.52997 * 109.47165 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.47592 * 60.00300 * 17 16 14 19 19 C 1.53006 * 109.46626 * 300.00035 * 18 17 16 20 20 H 1.09000 * 109.47050 * 299.99699 * 19 18 17 21 21 C 1.52999 * 109.46623 * 179.97438 * 19 18 17 22 22 C 1.53006 * 109.46997 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.46974 * 59.99987 * 22 21 19 24 24 C 1.53002 * 109.47092 * 300.00168 * 23 22 21 25 25 C 1.52996 * 109.47343 * 60.00063 * 24 23 22 26 26 H 1.09000 * 109.46870 * 59.99786 * 25 24 23 27 27 H 1.08996 * 109.47266 * 270.00662 * 1 2 3 28 28 H 1.09004 * 109.46901 * 30.00344 * 1 2 3 29 29 H 1.09000 * 109.47190 * 150.00108 * 1 2 3 30 30 H 1.08992 * 109.46947 * 29.99864 * 3 2 1 31 31 H 1.09006 * 109.46733 * 149.99591 * 3 2 1 32 32 H 0.97000 * 120.00330 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47054 * 300.00339 * 16 14 12 34 34 H 1.09001 * 109.46997 * 60.00072 * 16 14 12 35 35 H 1.09000 * 109.47140 * 299.99954 * 17 16 14 36 36 H 1.09002 * 109.47045 * 180.02562 * 17 16 14 37 37 H 1.08993 * 109.47839 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.47160 * 59.99666 * 18 17 16 39 39 H 1.09000 * 109.47486 * 299.99829 * 21 19 18 40 40 H 1.09001 * 109.47362 * 60.00551 * 21 19 18 41 41 H 1.09000 * 109.46866 * 300.00212 * 22 21 19 42 42 H 1.09001 * 109.47377 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.47045 * 180.02562 * 23 22 21 44 44 H 1.09000 * 109.47140 * 60.00393 * 23 22 21 45 45 H 1.09004 * 109.47059 * 299.99666 * 24 23 22 46 46 H 1.09004 * 109.46930 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.3467 3.2568 -2.9126 8 14 3.7339 3.9287 -0.2529 9 1 5.1070 3.5069 0.1238 10 1 3.7498 5.3553 -0.6648 11 1 2.8272 3.7596 0.9110 12 6 2.1389 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0010 14 6 1.3853 -2.4722 0.0005 15 1 0.7589 -2.5302 -0.8896 16 6 0.5053 -2.5531 1.2495 17 6 -0.2592 -3.8783 1.2498 18 6 0.7353 -5.0410 1.2506 19 6 1.6153 -4.9602 0.0016 20 1 0.9889 -5.0184 -0.8886 21 6 2.6102 -6.1225 0.0028 22 6 3.4898 -6.0421 -1.2466 23 6 4.2540 -4.7166 -1.2478 24 6 3.2590 -3.5543 -1.2489 25 6 2.3794 -3.6347 0.0004 26 1 3.0061 -3.5758 0.8903 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6085 2.0283 0.5138 31 1 3.1500 1.1384 0.5139 32 1 3.8242 4.0823 -3.0899 33 1 1.1318 -2.4952 2.1396 34 1 -0.2029 -1.7245 1.2491 35 1 -0.8856 -3.9366 0.3597 36 1 -0.8865 -3.9357 2.1394 37 1 0.1906 -5.9851 1.2504 38 1 1.3616 -4.9827 2.1408 39 1 3.2365 -6.0638 0.8929 40 1 2.0658 -7.0668 0.0031 41 1 2.8632 -6.1010 -2.1365 42 1 4.1984 -6.8704 -1.2460 43 1 4.8803 -4.6592 -2.1381 44 1 4.8806 -4.6577 -0.3579 45 1 2.6324 -3.6132 -2.1389 46 1 3.8035 -2.6100 -1.2502 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350074980.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:18 Heat of formation + Delta-G solvation = -86.279276 kcal Electronic energy + Delta-G solvation = -23486.147002 eV Core-core repulsion = 20373.308927 eV Total energy + Delta-G solvation = -3112.838076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.72957 -39.59399 -36.84743 -36.28465 -34.69157 -33.30472 -31.06938 -30.66375 -29.27355 -27.49901 -25.29837 -24.02164 -23.23472 -22.74510 -20.86313 -20.60965 -19.86467 -19.14316 -17.73465 -17.15843 -16.45646 -16.05993 -15.83351 -15.55634 -15.22672 -15.07109 -14.98638 -14.71475 -14.33407 -14.15310 -13.69173 -13.66112 -13.46729 -13.17189 -12.95381 -12.82244 -12.55036 -12.42702 -12.38544 -12.17396 -12.04480 -11.98322 -11.82052 -11.76201 -11.56190 -11.46512 -11.24351 -11.06600 -10.85143 -10.50667 -10.12752 -9.34683 -8.35977 -6.40932 1.30261 1.34569 1.43081 1.84647 2.28967 2.36854 2.98446 3.56870 3.62507 3.74852 3.97444 4.09695 4.16054 4.28420 4.31613 4.37342 4.39665 4.50055 4.54788 4.60053 4.65283 4.68671 4.71416 4.76115 4.81803 4.85787 4.92787 4.93605 5.01300 5.10448 5.14940 5.26007 5.27884 5.29757 5.31563 5.34427 5.44236 5.44879 5.47688 5.50032 5.60865 5.68119 5.72601 6.23172 6.60088 6.74021 7.20413 7.48033 8.81194 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022834 B = 0.005044 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.967837 B = 5549.502329 C = 6319.461452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.608 5.608 3 C 0.224 3.776 4 C -0.535 4.535 5 H 0.026 0.974 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.238 1.238 12 C 0.499 3.501 13 O -0.586 6.586 14 C -0.091 4.091 15 H 0.099 0.901 16 C -0.118 4.118 17 C -0.110 4.110 18 C -0.113 4.113 19 C -0.076 4.076 20 H 0.074 0.926 21 C -0.109 4.109 22 C -0.114 4.114 23 C -0.114 4.114 24 C -0.129 4.129 25 C -0.049 4.049 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.016 0.984 32 H 0.268 0.732 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.706 -18.998 10.186 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.339 5.339 3 C 0.101 3.899 4 C -0.573 4.573 5 H 0.044 0.956 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.161 1.161 12 C 0.288 3.712 13 O -0.467 6.467 14 C -0.112 4.112 15 H 0.117 0.883 16 C -0.156 4.156 17 C -0.147 4.147 18 C -0.150 4.150 19 C -0.095 4.095 20 H 0.093 0.907 21 C -0.147 4.147 22 C -0.152 4.152 23 C -0.152 4.152 24 C -0.166 4.166 25 C -0.068 4.068 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.040 -18.839 10.089 23.204 hybrid contribution 1.001 1.270 -0.335 1.652 sum -8.039 -17.569 9.754 21.643 Atomic orbital electron populations 1.22107 0.78048 1.03697 1.02722 1.47965 1.08245 1.05953 1.71759 1.19304 0.92648 0.82752 0.95198 1.21552 1.36737 1.06653 0.92378 0.95581 1.25859 0.95278 0.98949 0.98627 1.70051 1.42737 1.24543 1.21299 0.85702 0.79480 0.77801 0.79873 1.20350 1.19826 1.16108 1.21454 0.87855 0.86535 0.75333 1.90566 1.16472 1.87844 1.51826 1.21368 0.97675 0.90253 1.01924 0.88297 1.21809 0.98318 1.00680 0.94749 1.21509 0.97451 0.92398 1.03355 1.21611 0.97324 0.99190 0.96873 1.21172 0.96248 0.92648 0.99383 0.90749 1.21560 0.97254 0.98225 0.97611 1.21527 0.98757 0.96075 0.98799 1.21473 0.97600 0.95174 1.00957 1.21766 0.98299 0.99060 0.97512 1.20813 0.94873 0.93574 0.97552 0.92991 0.89857 0.91794 0.89417 0.93301 0.96605 0.92265 0.92774 0.89225 0.90753 0.89853 0.89871 0.92486 0.92478 0.89874 0.91777 0.90973 0.92840 0.93073 0.93170 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.22 8.80 127.77 1.12 3.34 16 2 N -0.61 -25.30 2.86 -851.14 -2.43 -27.74 16 3 C 0.22 11.20 4.23 85.63 0.36 11.56 16 4 C -0.53 -32.27 9.94 25.60 0.25 -32.01 16 5 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 6 C 0.01 0.65 5.47 84.65 0.46 1.11 16 7 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 8 Si 0.95 45.41 27.47 68.60 1.88 47.30 16 9 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 12 C 0.50 20.78 6.78 87.66 0.59 21.37 16 13 O -0.59 -30.08 13.24 -3.02 -0.04 -30.12 16 14 C -0.09 -2.65 1.26 -11.56 -0.01 -2.67 16 15 H 0.10 2.70 7.40 -2.39 -0.02 2.68 16 16 C -0.12 -2.53 4.84 30.59 0.15 -2.38 16 17 C -0.11 -1.64 5.92 30.59 0.18 -1.46 16 18 C -0.11 -1.74 5.21 30.60 0.16 -1.58 16 19 C -0.08 -1.49 1.99 -10.79 -0.02 -1.51 16 20 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 21 C -0.11 -1.93 5.20 30.60 0.16 -1.77 16 22 C -0.11 -2.28 5.92 30.60 0.18 -2.10 16 23 C -0.11 -3.12 5.92 30.59 0.18 -2.94 16 24 C -0.13 -4.27 4.88 30.59 0.15 -4.12 16 25 C -0.05 -1.39 1.16 -10.81 -0.01 -1.40 16 26 H 0.05 1.68 8.10 -2.39 -0.02 1.66 16 27 H 0.08 1.85 6.95 -2.39 -0.02 1.84 16 28 H 0.06 1.99 8.07 -2.38 -0.02 1.97 16 29 H 0.09 2.09 6.01 -2.39 -0.01 2.08 16 30 H 0.05 2.24 7.13 -2.39 -0.02 2.22 16 31 H 0.02 0.86 6.85 -2.38 -0.02 0.84 16 32 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.71 4.53 -2.39 -0.01 1.70 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.05 2.04 5.52 -2.38 -0.01 2.02 16 Total: -1.00 -76.82 338.56 4.50 -72.32 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.87 Total: 15.45 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 3.91 Total: -16.57 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -2.13 Total: -88.38 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.04 Total: -30.12 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.30 kcal Total: -76.82 4.50 -72.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350074980.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.955 kcal (2) G-P(sol) polarization free energy of solvation -76.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds