Wall clock time and date at job start Fri Apr 10 2020 17:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99885 * 2 1 4 4 H 1.48503 * 109.47383 * 269.99897 * 3 2 1 5 5 H 1.48503 * 109.47219 * 29.99964 * 3 2 1 6 6 H 1.48503 * 109.47409 * 149.99890 * 3 2 1 7 7 C 1.37880 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99854 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00155 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47031 * 185.12050 * 9 7 2 11 11 C 1.46954 * 110.99697 * 295.11989 * 10 9 7 12 12 C 1.53059 * 109.36393 * 183.18918 * 11 10 9 13 13 N 1.46957 * 109.36454 * 301.59992 * 12 11 10 14 14 C 1.46898 * 110.99812 * 183.18649 * 13 12 11 15 15 H 1.08999 * 110.32726 * 49.67644 * 14 13 12 16 16 C 1.54776 * 110.36562 * 287.44202 * 14 13 12 17 17 C 1.54988 * 102.95032 * 219.26149 * 16 14 13 18 18 N 1.48702 * 103.34810 * 37.03466 * 17 16 14 19 19 C 1.47219 * 105.63078 * 321.46556 * 18 17 16 20 20 C 1.53097 * 115.18297 * 154.83479 * 19 18 17 21 21 C 1.53911 * 86.88153 * 91.79812 * 20 19 18 22 22 C 1.53114 * 115.15372 * 254.81780 * 19 18 17 23 23 C 1.46957 * 110.87949 * 59.31726 * 13 12 11 24 24 C 1.46957 * 111.00202 * 58.92021 * 10 9 7 25 25 H 0.96994 * 120.00105 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46816 * 65.11790 * 9 7 2 27 27 H 1.08996 * 109.46912 * 305.12418 * 9 7 2 28 28 H 1.09004 * 109.49407 * 63.22327 * 11 10 9 29 29 H 1.08998 * 109.49176 * 303.15490 * 11 10 9 30 30 H 1.08998 * 109.48591 * 181.62641 * 12 11 10 31 31 H 1.09005 * 109.50137 * 61.58092 * 12 11 10 32 32 H 1.09001 * 110.71597 * 337.63088 * 16 14 13 33 33 H 1.09001 * 110.71476 * 100.71962 * 16 14 13 34 34 H 1.09008 * 110.64159 * 155.49933 * 17 16 14 35 35 H 1.09000 * 110.64544 * 278.40310 * 17 16 14 36 36 H 1.00902 * 110.99627 * 201.06990 * 18 17 16 37 37 H 1.08995 * 113.65066 * 206.29781 * 20 19 18 38 38 H 1.08996 * 113.64334 * 337.30747 * 20 19 18 39 39 H 1.08993 * 113.60021 * 270.35291 * 21 20 19 40 40 H 1.09003 * 113.58980 * 139.51144 * 21 20 19 41 41 H 1.08991 * 113.64875 * 22.67630 * 22 19 18 42 42 H 1.09005 * 113.64341 * 153.68150 * 22 19 18 43 43 H 1.09001 * 109.48599 * 60.64485 * 23 13 12 44 44 H 1.09002 * 109.48702 * 180.70995 * 23 13 12 45 45 H 1.09001 * 109.48284 * 296.77927 * 24 10 9 46 46 H 1.08997 * 109.48717 * 56.82249 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5735 -0.1229 11 6 3.6282 -3.3714 1.0534 12 6 4.2232 -4.7756 0.9236 13 7 3.7305 -5.4013 -0.3115 14 6 4.2202 -6.7808 -0.4343 15 1 4.0395 -7.3304 0.4895 16 6 5.7291 -6.7881 -0.7790 17 6 5.8475 -7.9518 -1.7958 18 7 4.5919 -7.8467 -2.5856 19 6 3.5437 -7.4840 -1.6176 20 6 2.3386 -6.7469 -2.2080 21 6 1.6859 -8.1295 -2.3846 22 6 2.5880 -8.6183 -1.2376 23 6 4.1036 -4.6033 -1.4878 24 6 3.5087 -3.1992 -1.3580 25 1 -0.4850 0.8400 -0.0004 26 1 3.8753 -0.7609 0.9318 27 1 3.8746 -0.6033 -0.8411 28 1 2.5422 -3.4410 1.1161 29 1 4.0149 -2.8945 1.9539 30 1 3.9236 -5.3781 1.7811 31 1 5.3106 -4.7083 0.8885 32 1 6.0245 -5.8441 -1.2370 33 1 6.3268 -6.9873 0.1105 34 1 6.7178 -7.8143 -2.4376 35 1 5.9003 -8.9100 -1.2789 36 1 4.3768 -8.7212 -3.0407 37 1 1.8226 -6.1082 -1.4912 38 1 2.5536 -6.2416 -3.1495 39 1 1.9075 -8.5974 -3.3437 40 1 0.6235 -8.1447 -2.1409 41 1 3.0030 -9.6128 -1.4011 42 1 2.1416 -8.5015 -0.2500 43 1 5.1896 -4.5337 -1.5504 44 1 3.7169 -5.0804 -2.3884 45 1 2.4213 -3.2668 -1.3226 46 1 3.8079 -2.5964 -2.2154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925728815.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:14 Heat of formation + Delta-G solvation = 53.804696 kcal Electronic energy + Delta-G solvation = -23598.441681 eV Core-core repulsion = 20523.970853 eV Total energy + Delta-G solvation = -3074.470828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.79811 -38.14208 -35.63311 -34.34535 -32.26564 -30.36166 -29.67593 -28.00371 -26.60890 -25.68208 -24.35435 -22.88685 -22.27617 -21.61873 -20.38629 -18.76804 -18.52271 -16.72631 -16.44085 -16.04285 -15.54530 -14.69439 -14.53992 -14.23437 -14.18898 -13.90017 -13.64061 -13.18939 -12.94372 -12.77863 -12.34647 -12.19795 -12.17666 -11.97851 -11.79679 -11.50017 -11.15172 -11.04897 -10.88919 -10.69680 -10.56931 -10.45062 -10.33825 -10.08017 -10.02237 -9.98082 -9.69981 -9.41627 -8.61853 -8.55846 -7.92187 -7.13605 -6.06771 -4.06071 3.29793 3.37451 3.41521 4.01432 4.08760 4.42656 4.51877 4.63735 4.78831 4.87334 5.00275 5.01534 5.11359 5.20946 5.26982 5.37604 5.53125 5.53960 5.63262 5.66163 5.73445 5.77852 5.84239 5.89312 5.93216 5.97989 6.05384 6.16173 6.22897 6.27153 6.30081 6.40667 6.52068 6.65914 6.82690 6.85027 6.94574 6.98393 7.10073 7.22956 7.42024 7.47266 7.60653 8.10984 8.15917 8.49141 8.97498 9.56385 11.06165 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.027455 B = 0.004592 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.589524 B = 6095.460229 C = 6561.314558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.077 0.923 9 C 0.154 3.846 10 N -0.537 5.537 11 C 0.063 3.937 12 C 0.060 3.940 13 N -0.519 5.519 14 C 0.091 3.909 15 H 0.082 0.918 16 C -0.165 4.165 17 C 0.044 3.956 18 N -0.646 5.646 19 C 0.083 3.917 20 C -0.108 4.108 21 C -0.145 4.145 22 C -0.154 4.154 23 C 0.051 3.949 24 C 0.063 3.937 25 H 0.263 0.737 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.335 0.665 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.036 0.964 44 H 0.086 0.914 45 H 0.054 0.946 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.425 -17.407 -2.532 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.587 4.587 8 H 0.095 0.905 9 C 0.028 3.972 10 N -0.261 5.261 11 C -0.066 4.066 12 C -0.068 4.068 13 N -0.242 5.242 14 C -0.019 4.019 15 H 0.101 0.899 16 C -0.205 4.205 17 C -0.086 4.086 18 N -0.274 5.274 19 C -0.009 4.009 20 C -0.146 4.146 21 C -0.183 4.183 22 C -0.193 4.193 23 C -0.077 4.077 24 C -0.066 4.066 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.151 0.849 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.054 0.946 44 H 0.104 0.896 45 H 0.073 0.927 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.394 -16.591 -2.811 19.272 hybrid contribution 0.210 0.042 0.545 0.585 sum 9.604 -16.549 -2.266 19.268 Atomic orbital electron populations 1.69929 1.06343 1.26889 1.50596 1.24967 0.94664 0.99126 0.94288 0.86813 0.80374 0.83711 0.78571 1.20243 1.21391 1.18971 1.21707 0.90636 0.94724 1.51607 0.90495 1.20142 0.94687 0.85830 0.96580 1.62614 1.58333 1.03648 1.01484 1.21939 0.99671 0.91018 0.93954 1.22185 0.97337 0.95710 0.91610 1.62277 1.58394 1.00527 1.03044 1.22340 0.91346 0.91002 0.97241 0.89946 1.23311 0.98343 0.99970 0.98849 1.22933 0.93446 0.97061 0.95132 1.62859 1.01869 1.36338 1.26352 1.22322 0.91181 0.95934 0.91493 1.22925 0.94468 0.95675 1.01574 1.22908 0.99200 0.98332 0.97856 1.23458 0.98570 0.97355 0.99942 1.22495 0.98176 0.93766 0.93235 1.21969 0.99286 0.92214 0.93102 0.92762 0.95653 0.95786 0.92944 0.91611 0.91521 0.94829 0.89471 0.91531 0.90363 0.94356 0.84861 0.87651 0.91092 0.90799 0.91569 0.92324 0.89534 0.94596 0.89551 0.92729 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.56 27.37 -169.99 -4.65 16.91 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.29 6.69 56.52 0.38 -5.91 16 7 C -0.55 -15.28 8.21 -34.44 -0.28 -15.56 16 8 H 0.08 2.35 6.07 -52.49 -0.32 2.03 16 9 C 0.15 3.75 4.21 -4.97 -0.02 3.73 16 10 N -0.54 -11.30 4.92 -235.91 -1.16 -12.46 16 11 C 0.06 1.22 5.32 -3.76 -0.02 1.20 16 12 C 0.06 0.93 5.43 -3.76 -0.02 0.91 16 13 N -0.52 -7.82 3.52 -225.13 -0.79 -8.61 16 14 C 0.09 1.13 2.77 -66.59 -0.18 0.94 16 15 H 0.08 1.00 7.82 -51.93 -0.41 0.59 16 16 C -0.17 -1.89 5.77 -24.75 -0.14 -2.03 16 17 C 0.04 0.43 7.56 -1.78 -0.01 0.42 16 18 N -0.65 -6.88 7.34 -96.97 -0.71 -7.59 16 19 C 0.08 0.95 0.91 -131.13 -0.12 0.83 16 20 C -0.11 -1.40 5.25 -26.21 -0.14 -1.53 16 21 C -0.15 -1.55 8.02 -25.79 -0.21 -1.76 16 22 C -0.15 -1.57 7.18 -26.20 -0.19 -1.76 16 23 C 0.05 0.82 4.50 -3.77 -0.02 0.80 16 24 C 0.06 1.25 5.24 -3.77 -0.02 1.23 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 26 H 0.03 0.62 7.52 -51.93 -0.39 0.23 16 27 H 0.02 0.59 7.29 -51.93 -0.38 0.21 16 28 H 0.05 1.16 6.78 -51.93 -0.35 0.81 16 29 H 0.07 1.24 8.12 -51.93 -0.42 0.81 16 30 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 31 H 0.03 0.52 7.66 -51.93 -0.40 0.12 16 32 H 0.09 1.16 5.32 -51.93 -0.28 0.88 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 35 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.33 3.06 8.47 -39.29 -0.33 2.73 16 37 H 0.11 1.60 7.19 -51.93 -0.37 1.23 16 38 H 0.07 0.97 7.12 -51.93 -0.37 0.60 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 42 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 43 H 0.04 0.59 5.83 -51.93 -0.30 0.29 16 44 H 0.09 1.36 4.84 -51.93 -0.25 1.10 16 45 H 0.05 1.24 6.61 -51.93 -0.34 0.90 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -29.24 331.89 -10.88 -40.12 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.87 Total: 3.96 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -1.47 Total: -10.62 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -1.89 Total: -55.36 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.65 Total: 16.91 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.24 -10.88 -40.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925728815.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.925 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds