Wall clock time and date at job start Fri Apr 10 2020 17:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99885 * 2 1 4 4 H 1.48503 * 109.47383 * 269.99897 * 3 2 1 5 5 H 1.48503 * 109.47219 * 29.99964 * 3 2 1 6 6 H 1.48503 * 109.47409 * 149.99890 * 3 2 1 7 7 C 1.37880 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99854 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00155 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47031 * 185.12050 * 9 7 2 11 11 C 1.46954 * 110.99697 * 295.11989 * 10 9 7 12 12 C 1.53059 * 109.36393 * 183.18918 * 11 10 9 13 13 N 1.46957 * 109.36454 * 301.59992 * 12 11 10 14 14 C 1.46898 * 110.99812 * 183.18649 * 13 12 11 15 15 H 1.08999 * 110.32726 * 49.67644 * 14 13 12 16 16 C 1.54776 * 110.36562 * 287.44202 * 14 13 12 17 17 C 1.54988 * 102.95032 * 219.26149 * 16 14 13 18 18 N 1.48702 * 103.34810 * 37.03466 * 17 16 14 19 19 C 1.47219 * 105.63078 * 321.46556 * 18 17 16 20 20 C 1.53097 * 115.18297 * 154.83479 * 19 18 17 21 21 C 1.53911 * 86.88153 * 91.79812 * 20 19 18 22 22 C 1.53114 * 115.15372 * 254.81780 * 19 18 17 23 23 C 1.46957 * 110.87949 * 59.31726 * 13 12 11 24 24 C 1.46957 * 111.00202 * 58.92021 * 10 9 7 25 25 H 0.96994 * 120.00105 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46816 * 65.11790 * 9 7 2 27 27 H 1.08996 * 109.46912 * 305.12418 * 9 7 2 28 28 H 1.09004 * 109.49407 * 63.22327 * 11 10 9 29 29 H 1.08998 * 109.49176 * 303.15490 * 11 10 9 30 30 H 1.08998 * 109.48591 * 181.62641 * 12 11 10 31 31 H 1.09005 * 109.50137 * 61.58092 * 12 11 10 32 32 H 1.09001 * 110.71597 * 337.63088 * 16 14 13 33 33 H 1.09001 * 110.71476 * 100.71962 * 16 14 13 34 34 H 1.09008 * 110.64159 * 155.49933 * 17 16 14 35 35 H 1.09000 * 110.64544 * 278.40310 * 17 16 14 36 36 H 1.00902 * 110.99627 * 201.06990 * 18 17 16 37 37 H 1.08995 * 113.65066 * 206.29781 * 20 19 18 38 38 H 1.08996 * 113.64334 * 337.30747 * 20 19 18 39 39 H 1.08993 * 113.60021 * 270.35291 * 21 20 19 40 40 H 1.09003 * 113.58980 * 139.51144 * 21 20 19 41 41 H 1.08991 * 113.64875 * 22.67630 * 22 19 18 42 42 H 1.09005 * 113.64341 * 153.68150 * 22 19 18 43 43 H 1.09001 * 109.48599 * 60.64485 * 23 13 12 44 44 H 1.09002 * 109.48702 * 180.70995 * 23 13 12 45 45 H 1.09001 * 109.48284 * 296.77927 * 24 10 9 46 46 H 1.08997 * 109.48717 * 56.82249 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5735 -0.1229 11 6 3.6282 -3.3714 1.0534 12 6 4.2232 -4.7756 0.9236 13 7 3.7305 -5.4013 -0.3115 14 6 4.2202 -6.7808 -0.4343 15 1 4.0395 -7.3304 0.4895 16 6 5.7291 -6.7881 -0.7790 17 6 5.8475 -7.9518 -1.7958 18 7 4.5919 -7.8467 -2.5856 19 6 3.5437 -7.4840 -1.6176 20 6 2.3386 -6.7469 -2.2080 21 6 1.6859 -8.1295 -2.3846 22 6 2.5880 -8.6183 -1.2376 23 6 4.1036 -4.6033 -1.4878 24 6 3.5087 -3.1992 -1.3580 25 1 -0.4850 0.8400 -0.0004 26 1 3.8753 -0.7609 0.9318 27 1 3.8746 -0.6033 -0.8411 28 1 2.5422 -3.4410 1.1161 29 1 4.0149 -2.8945 1.9539 30 1 3.9236 -5.3781 1.7811 31 1 5.3106 -4.7083 0.8885 32 1 6.0245 -5.8441 -1.2370 33 1 6.3268 -6.9873 0.1105 34 1 6.7178 -7.8143 -2.4376 35 1 5.9003 -8.9100 -1.2789 36 1 4.3768 -8.7212 -3.0407 37 1 1.8226 -6.1082 -1.4912 38 1 2.5536 -6.2416 -3.1495 39 1 1.9075 -8.5974 -3.3437 40 1 0.6235 -8.1447 -2.1409 41 1 3.0030 -9.6128 -1.4011 42 1 2.1416 -8.5015 -0.2500 43 1 5.1896 -4.5337 -1.5504 44 1 3.7169 -5.0804 -2.3884 45 1 2.4213 -3.2668 -1.3226 46 1 3.8079 -2.5964 -2.2154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925728815.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:13 Heat of formation + Delta-G solvation = 31.744731 kcal Electronic energy + Delta-G solvation = -23599.398273 eV Core-core repulsion = 20523.970853 eV Total energy + Delta-G solvation = -3075.427420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80882 -39.56866 -36.85983 -35.57719 -34.33009 -31.83225 -31.04460 -29.31188 -27.94289 -26.66875 -25.90764 -24.32557 -23.30890 -23.13179 -21.70641 -20.21864 -19.56022 -18.77014 -17.34589 -17.28408 -16.68583 -16.29198 -15.84294 -15.77065 -15.76452 -15.18798 -14.94069 -14.47737 -14.27688 -14.12512 -13.87151 -13.55226 -13.33377 -13.08936 -13.03822 -12.80485 -12.74866 -12.42809 -12.29819 -12.15362 -12.02289 -11.82657 -11.74089 -11.61476 -11.50387 -11.46176 -11.04434 -10.84931 -10.78121 -9.42069 -9.15831 -8.94805 -8.30544 -6.35575 1.35506 1.36452 1.48867 2.34096 2.92202 3.04308 3.17786 3.33340 3.62836 3.75677 3.87011 3.97611 4.00871 4.18568 4.22294 4.27333 4.34472 4.40970 4.49105 4.53857 4.61472 4.70375 4.71718 4.83219 4.90583 4.95916 4.96583 4.99298 5.00570 5.07323 5.07483 5.14353 5.16983 5.21695 5.25264 5.29621 5.39998 5.50883 5.52531 5.97628 6.07059 6.16638 6.26788 6.38055 6.42493 6.51451 6.71432 7.31002 8.85871 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.027455 B = 0.004592 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.589524 B = 6095.460229 C = 6561.314558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.547 4.547 8 H 0.033 0.967 9 C 0.161 3.839 10 N -0.530 5.530 11 C 0.064 3.936 12 C 0.071 3.929 13 N -0.533 5.533 14 C 0.088 3.912 15 H 0.092 0.908 16 C -0.162 4.162 17 C 0.049 3.951 18 N -0.654 5.654 19 C 0.088 3.912 20 C -0.118 4.118 21 C -0.138 4.138 22 C -0.143 4.143 23 C 0.070 3.930 24 C 0.067 3.933 25 H 0.265 0.735 26 H 0.029 0.971 27 H 0.028 0.972 28 H 0.013 0.987 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.346 0.654 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.014 0.986 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.052 -18.785 -2.519 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.585 4.585 8 H 0.051 0.949 9 C 0.033 3.967 10 N -0.253 5.253 11 C -0.065 4.065 12 C -0.057 4.057 13 N -0.256 5.256 14 C -0.021 4.021 15 H 0.110 0.890 16 C -0.201 4.201 17 C -0.080 4.080 18 N -0.284 5.284 19 C -0.004 4.004 20 C -0.157 4.157 21 C -0.176 4.176 22 C -0.183 4.183 23 C -0.058 4.058 24 C -0.062 4.062 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.031 0.969 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.164 0.836 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.061 0.939 44 H 0.108 0.892 45 H 0.032 0.968 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.041 -18.005 -2.800 21.840 hybrid contribution -0.684 0.398 0.528 0.952 sum 11.357 -17.606 -2.272 21.074 Atomic orbital electron populations 1.70085 1.08354 1.28097 1.52277 1.25924 0.95511 1.03386 0.93883 0.85667 0.79465 0.78340 0.79168 1.19252 1.20969 1.17027 1.21869 0.92644 0.93144 1.50874 0.94878 1.20019 0.91944 0.88054 0.96687 1.62657 1.57489 1.02667 1.02534 1.21980 0.97528 0.93476 0.93516 1.22065 0.97545 0.93448 0.92676 1.62214 1.59215 1.01859 1.02301 1.22444 0.92447 0.89044 0.98188 0.88992 1.23254 0.97213 0.99837 0.99802 1.22945 0.93109 0.97134 0.94797 1.62797 1.01896 1.37350 1.26368 1.22225 0.91001 0.95989 0.91193 1.22823 0.96137 0.96484 1.00214 1.22886 0.99092 0.96617 0.98970 1.23374 0.97657 0.97914 0.99327 1.22231 0.97985 0.91480 0.94056 1.21940 0.96972 0.94722 0.92564 0.92565 0.95269 0.95405 0.96882 0.90992 0.89454 0.93664 0.91315 0.90157 0.89567 0.92493 0.83604 0.90769 0.92452 0.89347 0.91897 0.90170 0.90024 0.93928 0.89174 0.96801 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 2 C 0.01 0.63 5.47 84.66 0.46 1.10 16 3 Si 0.95 44.64 27.37 68.60 1.88 46.52 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -10.79 6.69 99.48 0.67 -10.12 16 7 C -0.55 -31.76 8.21 25.60 0.21 -31.55 16 8 H 0.03 2.17 6.07 -2.91 -0.02 2.15 16 9 C 0.16 7.85 4.21 85.56 0.36 8.21 16 10 N -0.53 -22.62 4.92 -900.27 -4.43 -27.04 16 11 C 0.06 2.51 5.32 86.31 0.46 2.97 16 12 C 0.07 2.13 5.43 86.31 0.47 2.60 16 13 N -0.53 -15.87 3.52 -866.18 -3.05 -18.93 16 14 C 0.09 2.02 2.77 45.65 0.13 2.15 16 15 H 0.09 1.97 7.82 -2.39 -0.02 1.95 16 16 C -0.16 -3.23 5.77 31.88 0.18 -3.04 16 17 C 0.05 0.79 7.56 86.63 0.65 1.45 16 18 N -0.65 -12.19 7.34 -460.72 -3.38 -15.57 16 19 C 0.09 1.87 0.91 3.66 0.00 1.87 16 20 C -0.12 -3.07 5.25 30.93 0.16 -2.91 16 21 C -0.14 -2.79 8.02 31.20 0.25 -2.54 16 22 C -0.14 -2.61 7.18 30.94 0.22 -2.39 16 23 C 0.07 2.27 4.50 86.31 0.39 2.66 16 24 C 0.07 2.75 5.24 86.31 0.45 3.20 16 25 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 26 H 0.03 1.41 7.52 -2.39 -0.02 1.39 16 27 H 0.03 1.34 7.29 -2.39 -0.02 1.33 16 28 H 0.01 0.61 6.78 -2.38 -0.02 0.59 16 29 H 0.07 2.70 8.12 -2.39 -0.02 2.68 16 30 H 0.09 2.29 8.09 -2.39 -0.02 2.27 16 31 H 0.05 1.29 7.66 -2.38 -0.02 1.27 16 32 H 0.07 1.66 5.32 -2.39 -0.01 1.64 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.35 5.20 8.47 -89.69 -0.76 4.44 16 37 H 0.07 2.40 7.19 -2.39 -0.02 2.38 16 38 H 0.06 1.61 7.12 -2.39 -0.02 1.59 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.15 8.07 -2.39 -0.02 1.13 16 42 H 0.08 1.59 8.09 -2.38 -0.02 1.57 16 43 H 0.04 1.35 5.83 -2.39 -0.01 1.34 16 44 H 0.09 2.87 4.84 -2.39 -0.01 2.86 16 45 H 0.01 0.67 6.61 -2.39 -0.02 0.66 16 46 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -65.90 331.89 -4.12 -70.02 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.16 Total: 20.98 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 4.40 Total: -16.22 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -10.56 Total: -121.30 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -65.90 -4.12 -70.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925728815.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.764 kcal (2) G-P(sol) polarization free energy of solvation -65.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds