Wall clock time and date at job start Fri Apr 10 2020 17:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00365 * 2 1 4 4 H 1.48506 * 109.47029 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47304 * 239.99963 * 3 2 1 6 6 H 1.48500 * 109.47367 * 119.99488 * 3 2 1 7 7 C 1.37875 * 119.99636 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00373 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00174 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.46917 * 179.97438 * 9 7 2 11 11 C 1.46956 * 110.99739 * 293.79260 * 10 9 7 12 12 C 1.53052 * 109.36013 * 176.81374 * 11 10 9 13 13 N 1.46958 * 109.36425 * 58.40362 * 12 11 10 14 14 C 1.46896 * 110.99988 * 176.80806 * 13 12 11 15 15 H 1.09001 * 110.34225 * 67.92555 * 14 13 12 16 16 C 1.54065 * 110.38275 * 305.53554 * 14 13 12 17 17 N 1.48300 * 106.66722 * 243.59293 * 16 14 13 18 18 C 1.50324 * 104.38756 * 330.56814 * 17 16 14 19 19 C 1.54998 * 110.37951 * 190.19715 * 14 13 12 20 20 H 1.09004 * 113.19754 * 265.29479 * 19 14 13 21 21 C 1.54003 * 107.05323 * 30.52130 * 19 14 13 22 22 C 1.53150 * 108.50961 * 45.88395 * 21 19 14 23 23 C 1.47678 * 109.79963 * 87.00829 * 17 16 14 24 24 C 1.46957 * 110.88168 * 300.67992 * 13 12 11 25 25 C 1.46954 * 110.99370 * 169.99632 * 10 9 7 26 26 H 0.96998 * 120.00743 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46925 * 299.99487 * 9 7 2 28 28 H 1.08991 * 109.47109 * 59.99218 * 9 7 2 29 29 H 1.08995 * 109.49160 * 296.78397 * 11 10 9 30 30 H 1.09001 * 109.48677 * 56.85175 * 11 10 9 31 31 H 1.08998 * 109.49205 * 298.43530 * 12 11 10 32 32 H 1.09001 * 109.50707 * 178.38170 * 12 11 10 33 33 H 1.08998 * 110.00970 * 1.50240 * 16 14 13 34 34 H 1.09004 * 110.01071 * 122.87788 * 16 14 13 35 35 H 1.09001 * 112.12228 * 286.17489 * 18 17 16 36 36 H 1.08996 * 110.38307 * 162.04594 * 18 17 16 37 37 H 1.09000 * 109.63137 * 165.59159 * 21 19 14 38 38 H 1.09004 * 109.63221 * 286.18116 * 21 19 14 39 39 H 1.08998 * 109.37248 * 174.18203 * 22 21 19 40 40 H 1.08997 * 109.36796 * 293.93303 * 22 21 19 41 41 H 1.09002 * 109.50217 * 193.00625 * 23 17 16 42 42 H 1.08995 * 109.50257 * 72.88902 * 23 17 16 43 43 H 1.09004 * 109.48623 * 299.35238 * 24 13 12 44 44 H 1.09004 * 109.50663 * 179.29772 * 24 13 12 45 45 H 1.09001 * 109.49610 * 303.15192 * 25 10 9 46 46 H 1.09004 * 109.49402 * 63.22486 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 -1.2125 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 2.9684 -3.6563 -1.2548 12 6 4.0039 -4.7811 -1.1832 13 7 3.3191 -6.0594 -0.9448 14 6 4.2736 -7.1760 -0.9449 15 1 4.9324 -7.1113 -0.0789 16 6 5.0954 -7.1793 -2.2481 17 7 4.7622 -8.4382 -2.9578 18 6 4.4224 -9.4072 -1.8599 19 6 3.5199 -8.5304 -0.9498 20 1 3.3805 -8.9477 0.0474 21 6 2.1939 -8.3066 -1.7004 22 6 2.4875 -7.5224 -2.9827 23 6 3.5661 -8.2361 -3.8000 24 6 2.5561 -6.0188 0.3105 25 6 1.5207 -4.8940 0.2389 26 1 -0.4851 -0.8400 0.0004 27 1 0.6239 -2.5567 0.8904 28 1 0.6245 -2.5570 -0.8895 29 1 2.2892 -3.8397 -2.0874 30 1 3.4764 -2.7033 -1.4026 31 1 4.6995 -4.5837 -0.3676 32 1 4.5517 -4.8320 -2.1241 33 1 4.8059 -6.3350 -2.8737 34 1 6.1596 -7.1262 -2.0182 35 1 5.3081 -9.7443 -1.3213 36 1 3.8657 -10.2544 -2.2602 37 1 1.7494 -9.2692 -1.9534 38 1 1.5089 -7.7375 -1.0719 39 1 1.5763 -7.4454 -3.5760 40 1 2.8355 -6.5226 -2.7233 41 1 3.1892 -9.2026 -4.1346 42 1 3.8290 -7.6280 -4.6655 43 1 3.2353 -5.8354 1.1431 44 1 2.0481 -6.9718 0.4586 45 1 0.9731 -4.8434 1.1800 46 1 0.8250 -5.0915 -0.5768 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926808165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:24 Heat of formation + Delta-G solvation = 18.883180 kcal Electronic energy + Delta-G solvation = -23726.411335 eV Core-core repulsion = 20650.426197 eV Total energy + Delta-G solvation = -3075.985138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.20942 -39.63937 -36.53570 -34.69508 -33.28844 -32.41419 -31.70867 -30.07891 -28.33776 -26.36368 -25.01223 -24.73459 -23.66099 -23.31374 -21.35201 -20.46099 -20.20388 -18.95304 -17.92201 -17.12348 -16.32385 -16.09908 -15.97790 -15.68848 -15.61369 -15.39483 -15.14655 -14.92125 -14.10302 -14.02540 -13.72101 -13.55853 -13.30352 -13.13777 -13.05293 -13.01753 -12.60655 -12.56268 -12.49351 -12.27310 -12.09084 -11.93357 -11.69339 -11.62730 -11.43869 -11.36630 -11.20802 -10.77619 -10.59556 -9.38210 -9.25090 -9.09163 -8.70643 -6.41549 1.52520 1.61050 1.80567 2.54522 2.72883 3.08517 3.11448 3.16484 3.48763 3.83049 3.87936 4.03655 4.09180 4.14651 4.18370 4.26666 4.29776 4.33928 4.40887 4.45213 4.50148 4.56824 4.61900 4.71025 4.74102 4.77427 4.84674 4.87554 4.90317 4.97610 5.00077 5.01975 5.07482 5.09494 5.17509 5.22251 5.37787 5.71089 5.73643 5.85825 5.91427 5.96613 6.01421 6.16658 6.34234 6.38097 6.59802 7.39415 8.68145 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.034544 B = 0.004089 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.367666 B = 6846.517398 C = 7050.677926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.037 4.037 3 Si 1.122 2.878 4 H -0.284 1.284 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.598 4.598 8 H 0.055 0.945 9 C 0.196 3.804 10 N -0.538 5.538 11 C 0.073 3.927 12 C 0.065 3.935 13 N -0.518 5.518 14 C 0.058 3.942 15 H 0.050 0.950 16 C 0.034 3.966 17 N -0.506 5.506 18 C 0.037 3.963 19 C -0.115 4.115 20 H 0.098 0.902 21 C -0.093 4.093 22 C -0.168 4.168 23 C 0.042 3.958 24 C 0.071 3.929 25 C 0.056 3.944 26 H 0.252 0.748 27 H -0.002 1.002 28 H -0.047 1.047 29 H 0.014 0.986 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.034 0.966 44 H 0.098 0.902 45 H 0.067 0.933 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.765 -20.019 -4.021 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.234 4.234 3 Si 0.942 3.058 4 H -0.209 1.209 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.636 4.636 8 H 0.073 0.927 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.055 4.055 12 C -0.063 4.063 13 N -0.243 5.243 14 C -0.052 4.052 15 H 0.068 0.932 16 C -0.095 4.095 17 N -0.227 5.227 18 C -0.091 4.091 19 C -0.135 4.135 20 H 0.116 0.884 21 C -0.131 4.131 22 C -0.206 4.206 23 C -0.086 4.086 24 C -0.057 4.057 25 C -0.073 4.073 26 H 0.061 0.939 27 H 0.016 0.984 28 H -0.029 1.029 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.053 0.947 44 H 0.116 0.884 45 H 0.085 0.915 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 10.055 -18.591 -4.419 21.593 hybrid contribution -1.302 -1.019 0.610 1.762 sum 8.753 -19.610 -3.809 21.810 Atomic orbital electron populations 1.70928 1.07986 1.29573 1.49013 1.27441 0.96484 1.06738 0.92717 0.82878 0.74034 0.70825 0.78039 1.20899 1.19291 1.19501 1.22254 0.94807 0.92091 1.54485 0.92676 1.19496 0.90747 0.90461 0.92394 1.62145 1.26799 1.02692 1.34675 1.21940 0.95614 0.98505 0.89469 1.22176 0.94736 0.87920 1.01495 1.62496 1.25621 1.02717 1.33461 1.23044 0.92657 0.90992 0.98479 0.93217 1.23230 0.99530 0.93666 0.93038 1.66546 1.31723 1.07331 1.17134 1.23810 0.98807 0.95191 0.91314 1.23105 0.96233 0.93956 1.00187 0.88426 1.21530 0.96195 0.98974 0.96410 1.22524 0.98776 1.03107 0.96234 1.22499 0.89524 1.00671 0.95923 1.22106 0.95366 0.97831 0.90348 1.22158 0.95822 0.89592 0.99722 0.93866 0.98442 1.02915 0.96776 0.91631 0.94564 0.88558 0.90867 0.89242 0.88794 0.89495 0.92353 0.92614 0.93755 0.88446 0.90577 0.91267 0.94729 0.88364 0.91471 0.96129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.77 13.65 21.45 0.29 -58.48 16 2 C -0.04 -2.14 5.46 84.65 0.46 -1.67 16 3 Si 1.12 50.64 29.90 68.60 2.05 52.69 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.60 -34.67 8.47 25.60 0.22 -34.46 16 8 H 0.05 3.15 7.13 -2.91 -0.02 3.13 16 9 C 0.20 10.65 4.03 85.56 0.34 10.99 16 10 N -0.54 -23.83 4.70 -900.27 -4.23 -28.06 16 11 C 0.07 2.89 5.43 86.31 0.47 3.36 16 12 C 0.06 1.90 5.05 86.31 0.44 2.34 16 13 N -0.52 -13.32 1.38 -864.37 -1.19 -14.52 16 14 C 0.06 1.18 2.37 45.96 0.11 1.29 16 15 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 16 C 0.03 0.68 5.52 86.39 0.48 1.15 16 17 N -0.51 -9.68 6.05 -873.89 -5.29 -14.97 16 18 C 0.04 0.57 6.52 86.42 0.56 1.14 16 19 C -0.11 -1.99 3.42 -8.98 -0.03 -2.02 16 20 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 21 C -0.09 -1.86 5.00 30.98 0.15 -1.71 16 22 C -0.17 -3.72 5.43 30.64 0.17 -3.55 16 23 C 0.04 0.82 5.88 86.15 0.51 1.33 16 24 C 0.07 1.98 4.83 86.31 0.42 2.40 16 25 C 0.06 2.02 5.61 86.31 0.48 2.51 16 26 H 0.25 16.09 7.22 -92.71 -0.67 15.43 16 27 H 0.00 -0.14 7.89 -2.39 -0.02 -0.16 16 28 H -0.05 -2.74 7.99 -2.39 -0.02 -2.76 16 29 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 2.84 6.79 -2.39 -0.02 2.82 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 2.45 5.90 -2.39 -0.01 2.44 16 33 H 0.07 1.61 4.81 -2.39 -0.01 1.60 16 34 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.21 7.77 -2.39 -0.02 1.19 16 37 H 0.06 1.04 8.09 -2.39 -0.02 1.02 16 38 H 0.06 1.28 5.74 -2.38 -0.01 1.27 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.10 2.57 3.93 -2.39 -0.01 2.56 16 41 H 0.08 1.32 7.91 -2.39 -0.02 1.31 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.10 2.30 5.79 -2.39 -0.01 2.28 16 45 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 46 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -65.20 326.49 -2.55 -67.74 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.04 Total: 12.50 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 4.78 Total: -16.90 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -10.42 Total: -116.03 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -65.20 -2.55 -67.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926808165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.627 kcal (2) G-P(sol) polarization free energy of solvation -65.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds