Wall clock time and date at job start Fri Apr 10 2020 17:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46828 * 2 1 4 4 N 1.46502 * 109.47045 * 119.99961 * 2 1 3 5 5 C 1.46505 * 119.99886 * 303.15037 * 4 2 1 6 6 C 1.50701 * 109.46541 * 269.99991 * 5 4 2 7 7 H 1.07993 * 120.00751 * 0.02562 * 6 5 4 8 8 C 1.37886 * 119.99542 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99831 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99913 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46621 * 90.00427 * 10 8 6 12 12 H 1.48502 * 109.46783 * 210.00039 * 10 8 6 13 13 H 1.48493 * 109.47177 * 330.00373 * 10 8 6 14 14 C 1.34773 * 120.00018 * 123.14782 * 4 2 1 15 15 O 1.21278 * 119.99938 * 185.35448 * 14 4 2 16 16 C 1.50699 * 120.00160 * 5.35890 * 14 4 2 17 17 H 1.09001 * 108.68585 * 310.75783 * 16 14 4 18 18 C 1.51305 * 108.68082 * 69.07632 * 16 14 4 19 19 C 1.51447 * 112.73446 * 74.19440 * 18 16 14 20 20 H 1.09004 * 114.52483 * 163.52676 * 19 18 16 21 21 C 1.52256 * 119.67923 * 307.54587 * 19 18 16 22 22 C 1.51989 * 120.13130 * 18.82878 * 19 18 16 23 23 H 1.09002 * 117.04844 * 143.77993 * 22 19 18 24 24 C 1.52134 * 120.65516 * 354.52246 * 22 19 18 25 25 C 1.51272 * 108.81084 * 192.41413 * 16 14 4 26 26 H 1.08996 * 108.72238 * 181.34232 * 25 16 14 27 27 C 1.53003 * 108.80725 * 63.01792 * 25 16 14 28 28 H 1.08999 * 109.47248 * 300.00121 * 1 2 3 29 29 H 1.08998 * 109.46947 * 60.00487 * 1 2 3 30 30 H 1.09004 * 109.47116 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47248 * 239.99879 * 2 1 3 32 32 H 1.09003 * 109.46514 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46958 * 299.99506 * 3 2 1 34 34 H 1.08997 * 109.47289 * 60.00457 * 3 2 1 35 35 H 1.08998 * 109.47156 * 29.99867 * 5 4 2 36 36 H 1.09000 * 109.47115 * 150.00229 * 5 4 2 37 37 H 0.97001 * 119.99951 * 180.02562 * 9 8 6 38 38 H 1.09007 * 109.02634 * 313.20573 * 18 16 14 39 39 H 1.09000 * 108.59959 * 194.89371 * 18 16 14 40 40 H 1.08998 * 117.54286 * 217.39999 * 21 19 18 41 41 H 1.09002 * 117.54132 * 2.66806 * 21 19 18 42 42 H 1.08997 * 108.92104 * 139.55566 * 24 22 19 43 43 H 1.09001 * 108.91903 * 258.11064 * 24 22 19 44 44 H 1.09003 * 109.46909 * 296.68442 * 27 25 16 45 45 H 1.08998 * 109.47110 * 56.68454 * 27 25 16 46 46 H 1.09000 * 109.46987 * 176.69032 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6084 -0.2316 2.5257 6 6 2.5894 0.7969 3.0265 7 1 3.4335 1.0806 2.4156 8 6 2.4093 1.3758 4.2650 9 7 3.2650 2.2737 4.7018 10 14 0.9488 0.8856 5.3215 11 1 1.3268 -0.2600 6.1875 12 1 0.5437 2.0351 6.1700 13 1 -0.1849 0.4921 4.4469 14 6 2.8447 -1.7482 1.0736 15 8 3.1714 -2.3796 2.0562 16 6 3.3628 -2.1462 -0.2844 17 1 2.5224 -2.2012 -0.9765 18 6 4.3247 -1.0826 -0.7670 19 6 5.6587 -1.1319 -0.0517 20 1 6.4598 -0.5861 -0.5502 21 6 5.6988 -1.1210 1.4703 22 6 6.0802 -2.3894 0.6908 23 1 7.1379 -2.6513 0.6612 24 6 5.1242 -3.5644 0.8316 25 6 4.0001 -3.5143 -0.1816 26 1 4.3955 -3.7904 -1.1591 27 6 2.9279 -4.5290 0.2205 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.6148 0.2127 2.4663 36 1 1.5875 -1.0782 3.2119 37 1 3.1385 2.6806 5.5732 38 1 3.8771 -0.1011 -0.6100 39 1 4.4922 -1.2240 -1.8347 40 1 6.5033 -0.5628 1.9492 41 1 4.7460 -1.1222 1.9997 42 1 5.6812 -4.4914 0.6960 43 1 4.6970 -3.5542 1.8343 44 1 2.5446 -4.2796 1.2100 45 1 2.1126 -4.5019 -0.5024 46 1 3.3628 -5.5283 0.2406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931327859.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:44 Heat of formation + Delta-G solvation = -15.931009 kcal Electronic energy + Delta-G solvation = -24548.578294 eV Core-core repulsion = 21438.790748 eV Total energy + Delta-G solvation = -3109.787546 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85413 -37.79464 -36.02258 -34.09606 -32.73001 -31.50468 -30.89857 -27.95506 -26.91630 -26.77051 -24.73358 -22.52144 -21.44547 -20.95289 -20.76763 -18.91194 -17.62341 -16.85477 -16.39909 -15.60810 -15.16688 -14.48623 -14.18953 -14.13665 -13.81982 -13.59107 -13.25569 -12.97133 -12.76625 -12.47448 -12.32997 -11.99000 -11.81201 -11.76905 -11.69918 -11.52627 -11.36462 -10.98599 -10.92501 -10.82920 -10.59299 -10.46987 -10.27510 -10.25267 -10.03591 -9.96824 -9.40503 -9.36218 -9.19178 -8.55177 -8.42825 -7.62966 -6.05381 -4.02344 3.29849 3.35817 3.38589 3.41108 3.86361 4.24537 4.41988 4.79740 4.95397 5.01638 5.17250 5.27626 5.33350 5.39439 5.43390 5.49983 5.51317 5.57141 5.63875 5.78030 5.87132 5.92825 5.97059 6.01527 6.09758 6.15331 6.17532 6.22584 6.28016 6.33899 6.40639 6.48551 6.54877 6.60312 6.61042 6.66892 6.82830 6.96960 7.02678 7.04953 7.09426 7.47436 7.65895 8.35005 8.52205 8.99284 9.08774 9.56104 11.07500 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.007371 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.219954 B = 3797.895463 C = 4136.641712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 C -0.161 4.161 4 N -0.588 5.588 5 C 0.213 3.787 6 C -0.519 4.519 7 H 0.079 0.921 8 C 0.072 3.928 9 N -0.897 5.897 10 Si 0.871 3.129 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.519 3.481 15 O -0.534 6.534 16 C -0.103 4.103 17 H 0.085 0.915 18 C -0.085 4.085 19 C -0.146 4.146 20 H 0.091 0.909 21 C -0.183 4.183 22 C -0.149 4.149 23 H 0.090 0.910 24 C -0.091 4.091 25 C -0.061 4.061 26 H 0.062 0.938 27 C -0.154 4.154 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.029 0.971 36 H 0.035 0.965 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.130 0.870 42 H 0.049 0.951 43 H 0.102 0.898 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 -7.607 -13.274 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 C -0.218 4.218 4 N -0.319 5.319 5 C 0.092 3.908 6 C -0.558 4.558 7 H 0.097 0.903 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.698 3.302 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.192 1.192 14 C 0.307 3.693 15 O -0.412 6.412 16 C -0.124 4.124 17 H 0.103 0.897 18 C -0.123 4.123 19 C -0.165 4.165 20 H 0.110 0.890 21 C -0.219 4.219 22 C -0.167 4.167 23 H 0.108 0.892 24 C -0.128 4.128 25 C -0.080 4.080 26 H 0.081 0.919 27 C -0.211 4.211 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.148 0.852 42 H 0.068 0.932 43 H 0.120 0.880 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.093 -7.803 -12.581 14.845 hybrid contribution -0.574 0.081 0.572 0.814 sum -1.667 -7.723 -12.009 14.375 Atomic orbital electron populations 1.22170 0.95733 1.01733 1.02459 1.21082 0.93907 0.94285 0.88093 1.22227 1.01674 0.95521 1.02421 1.48040 1.46657 1.29525 1.07701 1.19629 0.95842 0.95614 0.79686 1.21350 1.10831 1.20968 1.02634 0.90255 1.24836 0.96013 0.94792 0.97312 1.69890 1.36169 1.27910 1.19610 0.86941 0.83689 0.78372 0.81208 1.20088 1.21296 1.19220 1.20324 0.78360 0.80076 0.90588 1.90531 1.57547 1.52971 1.40201 1.20778 0.98874 0.96549 0.96207 0.89678 1.20484 0.93770 0.99012 0.98994 1.21522 0.97990 1.01378 0.95573 0.89032 1.23619 1.05537 0.99597 0.93158 1.21992 0.98700 0.90136 1.05914 0.89159 1.20863 0.94373 0.95239 1.02358 1.20078 0.95891 0.92961 0.99045 0.91938 1.22011 0.98017 0.98262 1.02824 0.91514 0.92074 0.92922 0.90298 0.92220 0.93281 0.89918 0.95333 0.94737 0.92735 0.89908 0.91614 0.89993 0.85229 0.93221 0.87966 0.90774 0.93654 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.11 37.16 0.34 -1.92 16 2 C 0.13 2.04 2.30 -67.93 -0.16 1.88 16 3 C -0.16 -2.61 8.24 37.16 0.31 -2.31 16 4 N -0.59 -11.48 2.37 -167.46 -0.40 -11.87 16 5 C 0.21 4.99 3.79 -5.19 -0.02 4.97 16 6 C -0.52 -14.06 8.39 -34.44 -0.29 -14.35 16 7 H 0.08 2.35 7.84 -52.49 -0.41 1.93 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 10 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 14 C 0.52 9.92 4.34 -10.99 -0.05 9.87 16 15 O -0.53 -11.86 9.59 5.56 0.05 -11.80 16 16 C -0.10 -1.54 1.49 -93.50 -0.14 -1.68 16 17 H 0.09 1.11 6.82 -51.93 -0.35 0.75 16 18 C -0.09 -1.24 4.91 -28.37 -0.14 -1.38 16 19 C -0.15 -2.33 5.99 -92.30 -0.55 -2.88 16 20 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 21 C -0.18 -3.52 9.50 -26.75 -0.25 -3.77 16 22 C -0.15 -2.40 6.22 -91.22 -0.57 -2.97 16 23 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 24 C -0.09 -1.44 4.60 -27.97 -0.13 -1.57 16 25 C -0.06 -0.87 2.39 -92.29 -0.22 -1.09 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 C -0.15 -2.12 8.71 37.16 0.32 -1.80 16 28 H 0.07 1.04 6.56 -51.93 -0.34 0.70 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.05 4.92 -51.93 -0.26 0.79 16 32 H 0.06 1.04 6.47 -51.93 -0.34 0.70 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 35 H 0.03 0.65 5.32 -51.93 -0.28 0.38 16 36 H 0.03 0.88 6.78 -51.93 -0.35 0.53 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.08 1.27 4.31 -51.92 -0.22 1.05 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.13 3.00 4.46 -51.93 -0.23 2.77 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 1.94 5.52 -51.93 -0.29 1.65 16 44 H 0.07 1.22 6.15 -51.93 -0.32 0.90 16 45 H 0.04 0.55 8.13 -51.93 -0.42 0.13 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -30.14 329.54 -8.48 -38.62 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.56 Total: 6.68 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.64 Total: -17.04 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.38 Total: -38.10 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.05 Total: -11.80 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.14 -8.48 -38.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931327859.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.692 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds