Wall clock time and date at job start Fri Apr 10 2020 17:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46907 * 110.99738 * 2 1 4 4 C 1.46905 * 110.99763 * 123.95083 * 2 1 3 5 5 C 1.52998 * 109.57633 * 300.15954 * 4 2 1 6 6 C 1.53126 * 109.51684 * 180.02562 * 4 2 1 7 7 C 1.53038 * 109.27382 * 182.43975 * 6 4 2 8 8 N 1.46850 * 109.52152 * 59.18366 * 7 6 4 9 9 C 1.46908 * 110.99871 * 174.15828 * 8 7 6 10 10 C 1.52993 * 109.46664 * 176.32401 * 9 8 7 11 11 H 1.09001 * 109.47698 * 301.93578 * 10 9 8 12 12 C 1.47200 * 109.47216 * 61.93954 * 10 9 8 13 13 N 6.81503 * 112.90803 * 173.87822 * 2 1 3 14 14 C 1.53007 * 109.46783 * 181.93548 * 10 9 8 15 15 C 1.50702 * 109.47019 * 175.00164 * 14 10 9 16 16 H 1.07994 * 120.00076 * 0.02562 * 15 14 10 17 17 C 1.37880 * 119.99711 * 180.02562 * 15 14 10 18 18 N 1.31514 * 120.00036 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47273 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47201 * 119.99277 * 19 17 15 22 22 H 1.48495 * 109.47115 * 239.99766 * 19 17 15 23 23 C 1.46852 * 111.19819 * 298.25174 * 8 7 6 24 24 C 1.53037 * 109.51856 * 61.74556 * 23 8 7 25 25 H 1.09003 * 109.47050 * 296.04541 * 1 2 3 26 26 H 1.08994 * 109.47305 * 56.04854 * 1 2 3 27 27 H 1.09005 * 109.46629 * 176.04942 * 1 2 3 28 28 H 1.08997 * 109.46801 * 183.95344 * 3 2 1 29 29 H 1.08994 * 109.47146 * 303.95389 * 3 2 1 30 30 H 1.09003 * 109.47132 * 63.95469 * 3 2 1 31 31 H 1.09000 * 109.47087 * 299.83939 * 5 4 2 32 32 H 1.09000 * 109.47062 * 59.83906 * 5 4 2 33 33 H 1.08995 * 109.46801 * 179.84485 * 5 4 2 34 34 H 1.09005 * 109.50347 * 62.50530 * 6 4 2 35 35 H 1.08990 * 109.50711 * 302.38332 * 6 4 2 36 36 H 1.08995 * 109.46527 * 299.16427 * 7 6 4 37 37 H 1.09001 * 109.46074 * 179.19555 * 7 6 4 38 38 H 1.08995 * 109.46751 * 296.32510 * 9 8 7 39 39 H 1.09000 * 109.47160 * 56.32699 * 9 8 7 40 40 H 1.08993 * 109.47131 * 295.00168 * 14 10 9 41 41 H 1.09001 * 109.46845 * 55.00248 * 14 10 9 42 42 H 0.97000 * 119.99970 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.46018 * 181.75640 * 23 8 7 44 44 H 1.08997 * 109.46142 * 301.73383 * 23 8 7 45 45 H 1.08997 * 109.50025 * 180.88062 * 24 23 8 46 46 H 1.08999 * 109.53936 * 60.77704 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.5030 -0.1443 2.4460 6 6 3.5262 -0.7433 1.1052 7 6 4.0685 -1.5928 2.2569 8 7 3.5785 -2.9707 2.1233 9 6 4.1893 -3.8468 3.1321 10 6 3.5879 -5.2491 3.0209 11 1 2.5075 -5.1929 3.1539 12 6 3.8904 -5.8089 1.6935 13 7 4.1218 -6.2417 0.6694 14 6 4.1888 -6.1489 4.1028 15 6 3.5087 -7.4934 4.0727 16 1 2.7266 -7.6870 3.3536 17 6 3.8852 -8.4764 4.9632 18 7 4.8380 -8.2409 5.8385 19 14 3.0428 -10.1433 4.9255 20 1 2.0131 -10.1535 3.8553 21 1 4.0495 -11.2007 4.6543 22 1 2.3955 -10.4005 6.2369 23 6 2.1129 -3.0228 2.1991 24 6 1.5122 -2.2160 1.0457 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0827 1.3433 -0.0709 29 1 1.5898 1.9164 -0.8524 30 1 1.7044 1.8724 0.9233 31 1 1.8526 0.8860 2.5130 32 1 0.4133 -0.1603 2.4684 33 1 1.8923 -0.7155 3.2888 34 1 3.8774 0.2829 1.2133 35 1 3.8762 -1.1503 0.1566 36 1 3.7295 -1.1772 3.2057 37 1 5.1581 -1.5905 2.2281 38 1 5.2651 -3.8984 2.9649 39 1 3.9950 -3.4459 4.1269 40 1 5.2552 -6.2770 3.9178 41 1 4.0422 -5.6894 5.0802 42 1 5.1031 -8.9326 6.4648 43 1 1.7822 -4.0590 2.1283 44 1 1.7831 -2.6004 3.1482 45 1 0.4245 -2.2419 1.1113 46 1 1.8299 -2.6459 0.0958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931348972.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:46 Heat of formation + Delta-G solvation = 31.922893 kcal Electronic energy + Delta-G solvation = -22705.674651 eV Core-core repulsion = 19630.254957 eV Total energy + Delta-G solvation = -3075.419694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33763 -37.72836 -35.78408 -33.80709 -32.68358 -31.31091 -30.83684 -28.04784 -27.76344 -26.51039 -24.93015 -23.21602 -22.77720 -21.60807 -21.02468 -18.19267 -16.90413 -16.58236 -16.32870 -15.25200 -15.12601 -15.06970 -14.72916 -14.49745 -14.24684 -13.94044 -13.78531 -13.12632 -12.90769 -12.62028 -12.51179 -12.33026 -12.19879 -11.92417 -11.75933 -11.66030 -11.61092 -11.50923 -11.23491 -11.08722 -11.06807 -10.92893 -10.70222 -10.60029 -10.46846 -10.32056 -9.92975 -9.52619 -9.19235 -8.46085 -8.44849 -8.08627 -6.09755 -4.12756 3.28394 3.36754 3.41370 3.71942 3.76936 3.85390 4.03098 4.41386 4.52875 4.74062 4.91516 4.95678 4.96316 5.07639 5.18728 5.24021 5.28482 5.29562 5.33271 5.35200 5.42333 5.49157 5.56381 5.63278 5.67074 5.70693 5.74145 5.79316 5.86603 5.90779 5.97683 6.04960 6.11256 6.19873 6.36802 6.41445 6.51811 6.88697 6.96569 7.23415 7.25518 7.42852 7.53318 7.85753 8.23247 8.61350 8.92254 9.52786 11.01195 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.031725 B = 0.003573 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.380526 B = 7833.946601 C = 7972.277200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.535 5.535 3 C 0.019 3.981 4 C 0.109 3.891 5 C -0.185 4.185 6 C -0.103 4.103 7 C 0.057 3.943 8 N -0.538 5.538 9 C 0.063 3.937 10 C 0.005 3.995 11 H 0.101 0.899 12 C 0.255 3.745 13 N -0.476 5.476 14 C 0.031 3.969 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.047 3.953 24 C -0.102 4.102 25 H 0.028 0.972 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.026 0.974 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.027 0.973 41 H 0.037 0.963 42 H 0.262 0.738 43 H 0.085 0.915 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.694 20.212 -5.568 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.130 4.130 4 C 0.020 3.980 5 C -0.243 4.243 6 C -0.141 4.141 7 C -0.071 4.071 8 N -0.263 5.263 9 C -0.065 4.065 10 C -0.017 4.017 11 H 0.118 0.882 12 C -0.062 4.062 13 N -0.153 5.153 14 C -0.007 4.007 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.081 4.081 24 C -0.140 4.140 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.083 0.917 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.958 19.092 -7.886 21.498 hybrid contribution -1.029 -0.099 2.059 2.304 sum -6.986 18.993 -5.827 21.059 Atomic orbital electron populations 1.22462 0.87833 1.02491 1.00225 1.62246 1.07651 1.13402 1.42446 1.22453 1.01154 0.89170 1.00185 1.21111 0.95142 0.93833 0.87920 1.22569 1.01467 1.01088 0.99221 1.21668 0.93311 0.99049 1.00052 1.22083 1.00026 0.88244 0.96783 1.62002 1.06282 1.08034 1.50007 1.22230 0.99852 0.91249 0.93196 1.19337 1.02118 0.93375 0.86838 0.88157 1.28775 0.92345 0.91475 0.93650 1.80964 1.09816 1.11028 1.13465 1.19174 0.96775 0.93220 0.91564 1.21178 1.20243 0.97408 1.17501 0.92462 1.24953 0.94988 0.98762 0.95280 1.69948 1.29129 1.34021 1.19924 0.86543 0.79601 0.84085 0.77907 1.19651 1.20949 1.20882 1.22255 0.87772 1.01107 0.96931 1.21641 0.99316 0.92939 1.00066 0.95375 0.91771 0.90980 0.91032 0.91784 0.95514 0.92672 0.92430 0.91351 0.91780 0.90229 0.94710 0.90590 0.90023 0.93103 0.95507 0.94504 0.92861 0.89671 0.94470 0.91720 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 8.83 60.07 0.53 0.69 16 2 N -0.53 -5.29 4.84 -235.25 -1.14 -6.43 16 3 C 0.02 0.15 8.81 60.07 0.53 0.68 16 4 C 0.11 1.11 0.45 -131.47 -0.06 1.05 16 5 C -0.18 -1.71 7.21 37.16 0.27 -1.45 16 6 C -0.10 -1.08 4.43 -26.65 -0.12 -1.19 16 7 C 0.06 0.64 5.21 -3.83 -0.02 0.62 16 8 N -0.54 -7.31 4.38 -234.67 -1.03 -8.34 16 9 C 0.06 0.95 4.52 -3.82 -0.02 0.93 16 10 C 0.01 0.09 1.75 -93.41 -0.16 -0.07 16 11 H 0.10 1.74 6.07 -51.93 -0.32 1.42 16 12 C 0.25 5.35 13.46 -20.77 -0.28 5.07 16 13 N -0.48 -10.90 18.53 42.14 0.78 -10.12 16 14 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 15 C -0.53 -13.97 8.60 -34.44 -0.30 -14.27 16 16 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 19 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.05 0.60 4.79 -3.83 -0.02 0.58 16 24 C -0.10 -1.17 4.58 -26.65 -0.12 -1.29 16 25 H 0.03 0.23 6.31 -51.93 -0.33 -0.10 16 26 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 27 H 0.07 0.63 6.37 -51.93 -0.33 0.30 16 28 H 0.07 0.58 6.30 -51.93 -0.33 0.25 16 29 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.03 0.21 6.42 -51.93 -0.33 -0.12 16 31 H 0.05 0.48 6.52 -51.93 -0.34 0.14 16 32 H 0.06 0.52 6.40 -51.93 -0.33 0.19 16 33 H 0.07 0.67 4.92 -51.93 -0.26 0.41 16 34 H 0.06 0.58 6.50 -51.93 -0.34 0.24 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.03 0.37 6.51 -51.93 -0.34 0.03 16 37 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.09 1.18 5.71 -51.93 -0.30 0.88 16 44 H 0.04 0.44 6.51 -51.93 -0.34 0.10 16 45 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -29.79 344.61 -8.01 -37.80 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -7.55 Total: -3.20 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 0.01 Total: -6.43 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.65 Total: -49.65 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.79 -8.01 -37.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931348972.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.725 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds