Wall clock time and date at job start Fri Apr 10 2020 17:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46907 * 110.99738 * 2 1 4 4 C 1.46905 * 110.99763 * 123.95083 * 2 1 3 5 5 C 1.52998 * 109.57633 * 300.15954 * 4 2 1 6 6 C 1.53126 * 109.51684 * 180.02562 * 4 2 1 7 7 C 1.53038 * 109.27382 * 182.43975 * 6 4 2 8 8 N 1.46850 * 109.52152 * 59.18366 * 7 6 4 9 9 C 1.46908 * 110.99871 * 174.15828 * 8 7 6 10 10 C 1.52993 * 109.46664 * 176.32401 * 9 8 7 11 11 H 1.09001 * 109.47698 * 301.93578 * 10 9 8 12 12 C 1.47200 * 109.47216 * 61.93954 * 10 9 8 13 13 N 6.81503 * 112.90803 * 173.87822 * 2 1 3 14 14 C 1.53007 * 109.46783 * 181.93548 * 10 9 8 15 15 C 1.50702 * 109.47019 * 175.00164 * 14 10 9 16 16 H 1.07994 * 120.00076 * 0.02562 * 15 14 10 17 17 C 1.37880 * 119.99711 * 180.02562 * 15 14 10 18 18 N 1.31514 * 120.00036 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47273 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47201 * 119.99277 * 19 17 15 22 22 H 1.48495 * 109.47115 * 239.99766 * 19 17 15 23 23 C 1.46852 * 111.19819 * 298.25174 * 8 7 6 24 24 C 1.53037 * 109.51856 * 61.74556 * 23 8 7 25 25 H 1.09003 * 109.47050 * 296.04541 * 1 2 3 26 26 H 1.08994 * 109.47305 * 56.04854 * 1 2 3 27 27 H 1.09005 * 109.46629 * 176.04942 * 1 2 3 28 28 H 1.08997 * 109.46801 * 183.95344 * 3 2 1 29 29 H 1.08994 * 109.47146 * 303.95389 * 3 2 1 30 30 H 1.09003 * 109.47132 * 63.95469 * 3 2 1 31 31 H 1.09000 * 109.47087 * 299.83939 * 5 4 2 32 32 H 1.09000 * 109.47062 * 59.83906 * 5 4 2 33 33 H 1.08995 * 109.46801 * 179.84485 * 5 4 2 34 34 H 1.09005 * 109.50347 * 62.50530 * 6 4 2 35 35 H 1.08990 * 109.50711 * 302.38332 * 6 4 2 36 36 H 1.08995 * 109.46527 * 299.16427 * 7 6 4 37 37 H 1.09001 * 109.46074 * 179.19555 * 7 6 4 38 38 H 1.08995 * 109.46751 * 296.32510 * 9 8 7 39 39 H 1.09000 * 109.47160 * 56.32699 * 9 8 7 40 40 H 1.08993 * 109.47131 * 295.00168 * 14 10 9 41 41 H 1.09001 * 109.46845 * 55.00248 * 14 10 9 42 42 H 0.97000 * 119.99970 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.46018 * 181.75640 * 23 8 7 44 44 H 1.08997 * 109.46142 * 301.73383 * 23 8 7 45 45 H 1.08997 * 109.50025 * 180.88062 * 24 23 8 46 46 H 1.08999 * 109.53936 * 60.77704 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.5030 -0.1443 2.4460 6 6 3.5262 -0.7433 1.1052 7 6 4.0685 -1.5928 2.2569 8 7 3.5785 -2.9707 2.1233 9 6 4.1893 -3.8468 3.1321 10 6 3.5879 -5.2491 3.0209 11 1 2.5075 -5.1929 3.1539 12 6 3.8904 -5.8089 1.6935 13 7 4.1218 -6.2417 0.6694 14 6 4.1888 -6.1489 4.1028 15 6 3.5087 -7.4934 4.0727 16 1 2.7266 -7.6870 3.3536 17 6 3.8852 -8.4764 4.9632 18 7 4.8380 -8.2409 5.8385 19 14 3.0428 -10.1433 4.9255 20 1 2.0131 -10.1535 3.8553 21 1 4.0495 -11.2007 4.6543 22 1 2.3955 -10.4005 6.2369 23 6 2.1129 -3.0228 2.1991 24 6 1.5122 -2.2160 1.0457 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0827 1.3433 -0.0709 29 1 1.5898 1.9164 -0.8524 30 1 1.7044 1.8724 0.9233 31 1 1.8526 0.8860 2.5130 32 1 0.4133 -0.1603 2.4684 33 1 1.8923 -0.7155 3.2888 34 1 3.8774 0.2829 1.2133 35 1 3.8762 -1.1503 0.1566 36 1 3.7295 -1.1772 3.2057 37 1 5.1581 -1.5905 2.2281 38 1 5.2651 -3.8984 2.9649 39 1 3.9950 -3.4459 4.1269 40 1 5.2552 -6.2770 3.9178 41 1 4.0422 -5.6894 5.0802 42 1 5.1031 -8.9326 6.4648 43 1 1.7822 -4.0590 2.1283 44 1 1.7831 -2.6004 3.1482 45 1 0.4245 -2.2419 1.1113 46 1 1.8299 -2.6459 0.0958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931348972.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:45 Heat of formation + Delta-G solvation = 12.964331 kcal Electronic energy + Delta-G solvation = -22706.496756 eV Core-core repulsion = 19630.254957 eV Total energy + Delta-G solvation = -3076.241799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21988 -38.93032 -37.17701 -35.56377 -34.19183 -32.43512 -31.98944 -29.11527 -28.49826 -27.87869 -26.00391 -24.24399 -24.15365 -23.09156 -22.03261 -19.05819 -18.55626 -18.07984 -17.56983 -16.63783 -16.12265 -15.93364 -15.87858 -15.74092 -15.26823 -15.05179 -14.73400 -14.41169 -14.23691 -14.14226 -13.75968 -13.48250 -13.32878 -13.18799 -13.05741 -12.95746 -12.67695 -12.54138 -12.50677 -12.43074 -12.32252 -12.24167 -11.96934 -11.88807 -11.84510 -11.44300 -11.36762 -11.10848 -10.87825 -10.55156 -9.17054 -9.08598 -8.19491 -6.27568 1.38991 1.42302 1.52590 2.07416 2.14978 2.41555 2.92953 3.04370 3.16171 3.36102 3.70325 3.90362 4.06763 4.13292 4.25499 4.31589 4.36502 4.42198 4.44098 4.52212 4.58616 4.69996 4.70086 4.71568 4.75936 4.79005 4.82504 4.91986 4.97484 5.03122 5.07001 5.09535 5.11473 5.15465 5.29740 5.31650 5.46623 5.48197 5.61736 5.79266 6.12301 6.19665 6.23613 6.23999 6.27803 6.83428 6.93930 7.41044 8.91627 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.031725 B = 0.003573 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.380526 B = 7833.946601 C = 7972.277200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.552 5.552 3 C 0.019 3.981 4 C 0.112 3.888 5 C -0.178 4.178 6 C -0.097 4.097 7 C 0.058 3.942 8 N -0.553 5.553 9 C 0.073 3.927 10 C 0.016 3.984 11 H 0.117 0.883 12 C 0.265 3.735 13 N -0.512 5.512 14 C 0.038 3.962 15 C -0.538 4.538 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.948 3.052 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.048 3.952 24 C -0.096 4.096 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.002 0.998 41 H 0.036 0.964 42 H 0.264 0.736 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.747 21.667 -5.206 23.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.275 5.275 3 C -0.129 4.129 4 C 0.023 3.977 5 C -0.237 4.237 6 C -0.135 4.135 7 C -0.070 4.070 8 N -0.278 5.278 9 C -0.055 4.055 10 C -0.006 4.006 11 H 0.135 0.865 12 C -0.051 4.051 13 N -0.189 5.189 14 C 0.000 4.000 15 C -0.576 4.576 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.080 4.080 24 C -0.134 4.134 25 H 0.053 0.947 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.020 0.980 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.021 20.562 -7.530 22.995 hybrid contribution -0.703 -0.523 1.906 2.098 sum -7.724 20.038 -5.624 22.200 Atomic orbital electron populations 1.22470 0.87145 1.02371 1.00949 1.62223 1.08439 1.14398 1.42415 1.22478 1.01155 0.88342 1.00890 1.21028 0.94839 0.93056 0.88815 1.22495 1.01649 1.01369 0.98172 1.21617 0.93626 0.99675 0.98631 1.22140 1.00253 0.86903 0.97724 1.61963 1.06896 1.09299 1.49629 1.22059 0.99394 0.89428 0.94655 1.19307 1.02982 0.94387 0.83894 0.86524 1.29273 0.91299 0.90598 0.93914 1.80959 1.11088 1.12144 1.14720 1.18991 0.95158 0.92886 0.92997 1.21568 1.20070 0.99018 1.16957 0.92878 1.25701 0.95690 1.02092 0.95222 1.70036 1.30389 1.35137 1.20714 0.85651 0.78594 0.80090 0.78289 1.19396 1.21149 1.19737 1.22248 0.87241 1.00496 0.98032 1.21567 0.99842 0.93762 0.98276 0.94709 0.90944 0.91570 0.91029 0.91034 0.94818 0.91810 0.92105 0.91646 0.89991 0.92320 0.93322 0.90327 0.90421 0.91274 0.98008 0.94612 0.92705 0.91247 0.93055 0.90718 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.83 127.69 1.13 1.41 16 2 N -0.55 -9.96 4.84 -898.19 -4.34 -14.31 16 3 C 0.02 0.27 8.81 127.69 1.12 1.40 16 4 C 0.11 2.08 0.45 3.61 0.00 2.08 16 5 C -0.18 -2.82 7.21 71.98 0.52 -2.30 16 6 C -0.10 -1.88 4.43 30.65 0.14 -1.74 16 7 C 0.06 1.18 5.21 86.33 0.45 1.63 16 8 N -0.55 -14.30 4.38 -896.35 -3.93 -18.22 16 9 C 0.07 2.10 4.52 86.30 0.39 2.49 16 10 C 0.02 0.58 1.75 -12.60 -0.02 0.56 16 11 H 0.12 3.91 6.07 -2.39 -0.01 3.89 16 12 C 0.27 11.17 13.46 89.45 1.20 12.38 16 13 N -0.51 -23.63 18.53 20.00 0.37 -23.25 16 14 C 0.04 1.78 4.42 29.85 0.13 1.91 16 15 C -0.54 -28.59 8.60 25.60 0.22 -28.37 16 16 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 17 C 0.01 0.65 5.46 84.66 0.46 1.11 16 18 N -0.92 -52.93 13.29 21.45 0.28 -52.65 16 19 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 23 C 0.05 1.14 4.79 86.32 0.41 1.55 16 24 C -0.10 -2.12 4.58 30.65 0.14 -1.98 16 25 H 0.03 0.49 6.31 -2.39 -0.02 0.47 16 26 H 0.07 0.98 8.12 -2.39 -0.02 0.96 16 27 H 0.07 1.08 6.37 -2.38 -0.02 1.06 16 28 H 0.07 1.00 6.30 -2.39 -0.02 0.99 16 29 H 0.07 0.90 8.12 -2.39 -0.02 0.89 16 30 H 0.03 0.43 6.42 -2.39 -0.02 0.42 16 31 H 0.06 0.91 6.52 -2.39 -0.02 0.89 16 32 H 0.06 0.93 6.40 -2.39 -0.02 0.91 16 33 H 0.06 1.08 4.92 -2.39 -0.01 1.07 16 34 H 0.08 1.29 6.50 -2.38 -0.02 1.27 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 0.89 6.51 -2.39 -0.02 0.87 16 37 H 0.08 1.58 8.12 -2.39 -0.02 1.56 16 38 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 43 H 0.07 1.86 5.71 -2.39 -0.01 1.84 16 44 H 0.05 1.09 6.51 -2.39 -0.02 1.07 16 45 H 0.07 1.47 6.56 -2.39 -0.02 1.45 16 46 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -63.02 344.61 1.67 -61.35 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.96 Total: 9.40 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 6.30 Total: -7.86 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -7.61 Total: -108.43 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -63.02 1.67 -61.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931348972.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.315 kcal (2) G-P(sol) polarization free energy of solvation -63.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds