Wall clock time and date at job start Fri Apr 10 2020 17:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46984 * 2 1 4 4 C 1.52999 * 109.47044 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.46887 * 179.97438 * 4 3 2 6 6 N 1.30497 * 125.64978 * 305.02741 * 5 4 3 7 7 C 1.34131 * 109.25380 * 180.02562 * 6 5 4 8 8 C 1.34661 * 108.02182 * 359.97438 * 7 6 5 9 9 C 1.50704 * 126.59395 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47140 * 94.97626 * 9 8 7 11 11 C 1.36935 * 119.99963 * 84.69261 * 10 9 8 12 12 H 1.07998 * 120.00208 * 213.48664 * 11 10 9 13 13 C 1.38812 * 119.99808 * 33.49036 * 11 10 9 14 14 N 1.31624 * 120.00022 * 24.01316 * 13 11 10 15 15 Si 1.86797 * 120.00397 * 204.01269 * 13 11 10 16 16 H 1.48498 * 109.47245 * 59.99763 * 15 13 11 17 17 H 1.48496 * 109.47274 * 180.02562 * 15 13 11 18 18 H 1.48510 * 109.46758 * 300.00009 * 15 13 11 19 19 C 1.46497 * 119.99969 * 264.70306 * 10 9 8 20 20 C 1.52998 * 109.47758 * 89.99918 * 19 10 9 21 21 C 1.53002 * 109.47367 * 179.97438 * 20 19 10 22 22 C 1.52996 * 109.47163 * 179.97438 * 21 20 19 23 23 N 1.35046 * 125.64972 * 124.72371 * 5 4 3 24 24 H 0.96999 * 126.38916 * 359.97438 * 23 5 4 25 25 H 1.09006 * 109.46684 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47305 * 299.99898 * 1 2 3 27 27 H 1.08995 * 109.46944 * 60.00544 * 1 2 3 28 28 H 1.08992 * 109.47590 * 239.99913 * 2 1 3 29 29 H 1.09006 * 109.47400 * 119.99321 * 2 1 3 30 30 H 1.09000 * 109.47016 * 59.99925 * 3 2 1 31 31 H 1.08998 * 109.46776 * 300.00050 * 3 2 1 32 32 H 1.08998 * 109.47684 * 299.99872 * 4 3 2 33 33 H 1.09000 * 109.46966 * 60.00273 * 4 3 2 34 34 H 1.08001 * 125.98643 * 180.02562 * 7 6 5 35 35 H 1.08995 * 109.47404 * 214.97832 * 9 8 7 36 36 H 1.09001 * 109.46667 * 334.98165 * 9 8 7 37 37 H 0.96999 * 120.00343 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.46707 * 210.00071 * 19 10 9 39 39 H 1.09000 * 109.47253 * 329.99356 * 19 10 9 40 40 H 1.09009 * 109.46653 * 299.99980 * 20 19 10 41 41 H 1.09000 * 109.47197 * 59.99404 * 20 19 10 42 42 H 1.08993 * 109.46978 * 299.99724 * 21 20 19 43 43 H 1.09004 * 109.46791 * 59.99545 * 21 20 19 44 44 H 1.08996 * 109.47507 * 300.00516 * 22 21 20 45 45 H 1.09000 * 109.46879 * 59.99966 * 22 21 20 46 46 H 1.08997 * 109.47318 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 7 3.7522 3.7829 -0.8690 7 6 4.3863 4.9237 -0.5597 8 6 5.1268 4.7029 0.5431 9 6 6.0054 5.7025 1.2502 10 7 5.2576 6.3191 2.3487 11 6 5.1960 5.6988 3.5680 12 1 4.3065 5.7865 4.1742 13 6 6.2770 4.9574 4.0249 14 7 7.4865 5.2088 3.5706 15 14 6.0153 3.6030 5.2844 16 1 5.0896 2.5831 4.7294 17 1 7.3182 2.9672 5.6056 18 1 5.4298 4.1827 6.5201 19 6 4.5754 7.5990 2.1428 20 6 3.1481 7.3436 1.6545 21 6 2.4354 8.6805 1.4401 22 6 1.0084 8.4250 0.9512 23 7 4.9235 3.3978 0.9020 24 1 5.3188 2.9411 1.6610 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 0.9290 0.8908 33 1 3.9336 0.9287 -0.8891 34 1 4.3147 5.8561 -1.1000 35 1 6.8845 5.1959 1.6485 36 1 6.3182 6.4735 0.5460 37 1 8.2420 4.6910 3.8901 38 1 4.5447 8.1498 3.0829 39 1 5.1154 8.1828 1.3973 40 1 3.1788 6.7928 0.7143 41 1 2.6080 6.7599 2.4000 42 1 2.4047 9.2307 2.3804 43 1 2.9754 9.2645 0.6947 44 1 1.0394 7.8748 0.0108 45 1 0.4683 7.8408 1.6963 46 1 0.5005 9.3773 0.7989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141071533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:57 Heat of formation + Delta-G solvation = 33.910549 kcal Electronic energy + Delta-G solvation = -22550.860021 eV Core-core repulsion = 19475.526518 eV Total energy + Delta-G solvation = -3075.333503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.26770 -36.43074 -35.64928 -34.10234 -31.66483 -31.61853 -31.13840 -28.95325 -27.58216 -25.41494 -24.04720 -23.28583 -21.16926 -21.09844 -20.33084 -20.05149 -19.44211 -17.03659 -16.36027 -15.47961 -14.93100 -14.85131 -14.49346 -13.88331 -13.79098 -13.53012 -13.46102 -13.44271 -13.04577 -12.76365 -12.56175 -12.12586 -12.01196 -11.87571 -11.33811 -11.29315 -11.16120 -11.09373 -10.88874 -10.78450 -10.70378 -10.56697 -10.49427 -10.40548 -10.22162 -10.11177 -9.75156 -9.21684 -9.16667 -8.64974 -7.38299 -6.75622 -5.92754 -3.46846 2.88267 3.20927 3.30160 3.31541 3.83386 3.91310 4.34535 4.86360 4.97232 5.04615 5.12532 5.21264 5.32465 5.39965 5.43056 5.62617 5.62932 5.71521 5.74698 5.81706 5.88780 5.95813 6.00049 6.04164 6.14580 6.18409 6.19366 6.31609 6.34972 6.37812 6.40543 6.42079 6.47678 6.61958 6.64115 6.70429 6.99894 7.11750 7.21343 7.46591 7.60287 7.69602 8.18385 8.35769 8.83211 9.03226 9.67282 10.24287 11.05362 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.010168 B = 0.006483 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.145671 B = 4318.262181 C = 5781.568241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.109 4.109 4 C -0.025 4.025 5 C 0.171 3.829 6 N -0.490 5.490 7 C -0.061 4.061 8 C 0.020 3.980 9 C 0.195 3.805 10 N -0.575 5.575 11 C -0.249 4.249 12 H 0.061 0.939 13 C 0.005 3.995 14 N -0.884 5.884 15 Si 0.887 3.113 16 H -0.285 1.285 17 H -0.288 1.288 18 H -0.279 1.279 19 C 0.149 3.851 20 C -0.139 4.139 21 C -0.121 4.121 22 C -0.148 4.148 23 N -0.548 5.548 24 H 0.414 0.586 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.154 0.846 35 H 0.106 0.894 36 H 0.053 0.947 37 H 0.257 0.743 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 -4.266 -6.057 10.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.147 4.147 4 C -0.064 4.064 5 C -0.092 4.092 6 N -0.211 5.211 7 C -0.208 4.208 8 C -0.101 4.101 9 C 0.067 3.933 10 N -0.294 5.294 11 C -0.379 4.379 12 H 0.078 0.922 13 C -0.194 4.194 14 N -0.527 5.527 15 Si 0.716 3.284 16 H -0.211 1.211 17 H -0.214 1.214 18 H -0.205 1.205 19 C 0.022 3.978 20 C -0.179 4.179 21 C -0.160 4.160 22 C -0.206 4.206 23 N -0.151 5.151 24 H 0.252 0.748 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.172 0.828 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.341 -4.373 -6.676 11.544 hybrid contribution 0.505 -0.821 1.782 2.026 sum -7.837 -5.194 -4.894 10.599 Atomic orbital electron populations 1.21757 0.95986 1.01197 1.01952 1.21548 0.95863 0.97041 1.01769 1.21511 0.93786 0.96241 1.03187 1.19838 0.96061 0.88091 1.02441 1.22848 0.98097 0.97189 0.91090 1.69972 1.24777 1.00035 1.26312 1.21791 1.02327 0.97215 0.99515 1.23081 1.03978 0.85374 0.97630 1.19665 0.94279 0.91499 0.87881 1.43787 1.59226 1.18943 1.07440 1.19017 0.97405 1.26553 0.94962 0.92161 1.25029 0.94514 1.01656 0.98236 1.69957 0.97629 1.39662 1.45463 0.86606 0.76954 0.82716 0.82115 1.21133 1.21409 1.20455 1.20929 0.90739 0.87877 0.98211 1.22234 0.98398 0.95659 1.01593 1.21488 0.95420 0.98618 1.00431 1.21751 0.97179 1.00545 1.01112 1.43181 1.36705 1.11080 1.24086 0.74837 0.93057 0.92794 0.92677 0.92031 0.92239 0.92050 0.90751 0.91243 0.90206 0.82809 0.87653 0.92852 0.93329 0.93469 0.94713 0.92077 0.92948 0.92712 0.92666 0.92969 0.93212 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.12 -1.31 5.93 -26.73 -0.16 -1.46 16 3 C -0.11 -1.43 5.17 -26.73 -0.14 -1.57 16 4 C -0.03 -0.35 5.84 -27.88 -0.16 -0.52 16 5 C 0.17 3.14 7.43 -155.41 -1.15 1.98 16 6 N -0.49 -9.79 11.21 -10.82 -0.12 -9.91 16 7 C -0.06 -1.22 10.38 -17.81 -0.18 -1.40 16 8 C 0.02 0.42 6.74 -81.60 -0.55 -0.13 16 9 C 0.19 4.34 5.93 -5.19 -0.03 4.31 16 10 N -0.58 -13.47 2.45 -174.61 -0.43 -13.89 16 11 C -0.25 -6.41 9.44 -15.06 -0.14 -6.55 16 12 H 0.06 1.60 7.94 -52.49 -0.42 1.18 16 13 C 0.01 0.14 4.98 -17.43 -0.09 0.05 16 14 N -0.88 -23.64 11.29 55.49 0.63 -23.01 16 15 Si 0.89 20.20 29.62 -169.99 -5.03 15.17 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 C 0.15 3.03 5.71 -4.04 -0.02 3.00 16 20 C -0.14 -2.55 5.54 -26.73 -0.15 -2.70 16 21 C -0.12 -1.82 5.93 -26.73 -0.16 -1.98 16 22 C -0.15 -2.01 9.91 37.16 0.37 -1.65 16 23 N -0.55 -10.81 6.15 -6.54 -0.04 -10.85 16 24 H 0.41 8.02 8.96 -40.82 -0.37 7.65 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.15 2.84 8.01 -52.49 -0.42 2.42 16 35 H 0.11 2.63 5.32 -51.93 -0.28 2.35 16 36 H 0.05 1.11 7.83 -51.93 -0.41 0.71 16 37 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 39 H 0.03 0.66 7.86 -51.93 -0.41 0.26 16 40 H 0.06 1.18 6.56 -51.92 -0.34 0.84 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -27.63 371.85 -10.12 -37.76 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -8.53 Total: 8.85 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -2.20 Total: -9.71 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.04 Total: -57.67 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.63 -10.12 -37.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141071533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.666 kcal (2) G-P(sol) polarization free energy of solvation -27.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds