Wall clock time and date at job start Fri Apr 10 2020 17:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46984 * 2 1 4 4 C 1.52999 * 109.47044 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.46887 * 179.97438 * 4 3 2 6 6 N 1.30497 * 125.64978 * 305.02741 * 5 4 3 7 7 C 1.34131 * 109.25380 * 180.02562 * 6 5 4 8 8 C 1.34661 * 108.02182 * 359.97438 * 7 6 5 9 9 C 1.50704 * 126.59395 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47140 * 94.97626 * 9 8 7 11 11 C 1.36935 * 119.99963 * 84.69261 * 10 9 8 12 12 H 1.07998 * 120.00208 * 213.48664 * 11 10 9 13 13 C 1.38812 * 119.99808 * 33.49036 * 11 10 9 14 14 N 1.31624 * 120.00022 * 24.01316 * 13 11 10 15 15 Si 1.86797 * 120.00397 * 204.01269 * 13 11 10 16 16 H 1.48498 * 109.47245 * 59.99763 * 15 13 11 17 17 H 1.48496 * 109.47274 * 180.02562 * 15 13 11 18 18 H 1.48510 * 109.46758 * 300.00009 * 15 13 11 19 19 C 1.46497 * 119.99969 * 264.70306 * 10 9 8 20 20 C 1.52998 * 109.47758 * 89.99918 * 19 10 9 21 21 C 1.53002 * 109.47367 * 179.97438 * 20 19 10 22 22 C 1.52996 * 109.47163 * 179.97438 * 21 20 19 23 23 N 1.35046 * 125.64972 * 124.72371 * 5 4 3 24 24 H 0.96999 * 126.38916 * 359.97438 * 23 5 4 25 25 H 1.09006 * 109.46684 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47305 * 299.99898 * 1 2 3 27 27 H 1.08995 * 109.46944 * 60.00544 * 1 2 3 28 28 H 1.08992 * 109.47590 * 239.99913 * 2 1 3 29 29 H 1.09006 * 109.47400 * 119.99321 * 2 1 3 30 30 H 1.09000 * 109.47016 * 59.99925 * 3 2 1 31 31 H 1.08998 * 109.46776 * 300.00050 * 3 2 1 32 32 H 1.08998 * 109.47684 * 299.99872 * 4 3 2 33 33 H 1.09000 * 109.46966 * 60.00273 * 4 3 2 34 34 H 1.08001 * 125.98643 * 180.02562 * 7 6 5 35 35 H 1.08995 * 109.47404 * 214.97832 * 9 8 7 36 36 H 1.09001 * 109.46667 * 334.98165 * 9 8 7 37 37 H 0.96999 * 120.00343 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.46707 * 210.00071 * 19 10 9 39 39 H 1.09000 * 109.47253 * 329.99356 * 19 10 9 40 40 H 1.09009 * 109.46653 * 299.99980 * 20 19 10 41 41 H 1.09000 * 109.47197 * 59.99404 * 20 19 10 42 42 H 1.08993 * 109.46978 * 299.99724 * 21 20 19 43 43 H 1.09004 * 109.46791 * 59.99545 * 21 20 19 44 44 H 1.08996 * 109.47507 * 300.00516 * 22 21 20 45 45 H 1.09000 * 109.46879 * 59.99966 * 22 21 20 46 46 H 1.08997 * 109.47318 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 7 3.7522 3.7829 -0.8690 7 6 4.3863 4.9237 -0.5597 8 6 5.1268 4.7029 0.5431 9 6 6.0054 5.7025 1.2502 10 7 5.2576 6.3191 2.3487 11 6 5.1960 5.6988 3.5680 12 1 4.3065 5.7865 4.1742 13 6 6.2770 4.9574 4.0249 14 7 7.4865 5.2088 3.5706 15 14 6.0153 3.6030 5.2844 16 1 5.0896 2.5831 4.7294 17 1 7.3182 2.9672 5.6056 18 1 5.4298 4.1827 6.5201 19 6 4.5754 7.5990 2.1428 20 6 3.1481 7.3436 1.6545 21 6 2.4354 8.6805 1.4401 22 6 1.0084 8.4250 0.9512 23 7 4.9235 3.3978 0.9020 24 1 5.3188 2.9411 1.6610 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 0.9290 0.8908 33 1 3.9336 0.9287 -0.8891 34 1 4.3147 5.8561 -1.1000 35 1 6.8845 5.1959 1.6485 36 1 6.3182 6.4735 0.5460 37 1 8.2420 4.6910 3.8901 38 1 4.5447 8.1498 3.0829 39 1 5.1154 8.1828 1.3973 40 1 3.1788 6.7928 0.7143 41 1 2.6080 6.7599 2.4000 42 1 2.4047 9.2307 2.3804 43 1 2.9754 9.2645 0.6947 44 1 1.0394 7.8748 0.0108 45 1 0.4683 7.8408 1.6963 46 1 0.5005 9.3773 0.7989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141071533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:57 Heat of formation + Delta-G solvation = 21.524322 kcal Electronic energy + Delta-G solvation = -22551.397128 eV Core-core repulsion = 19475.526518 eV Total energy + Delta-G solvation = -3075.870610 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.80937 -38.10225 -36.67311 -35.59560 -33.38813 -33.16234 -32.44850 -30.35211 -29.14028 -27.00826 -25.50722 -24.60318 -22.69942 -22.08261 -21.80165 -21.66040 -20.91372 -18.82962 -17.96420 -16.80954 -16.51637 -16.31792 -15.84970 -15.58218 -15.08628 -15.04998 -14.89020 -14.56849 -14.34166 -14.03265 -13.91336 -13.63819 -13.27473 -13.14102 -13.05265 -12.83877 -12.53366 -12.40175 -12.21394 -12.13151 -12.07420 -11.96891 -11.84072 -11.77426 -11.68944 -11.43953 -11.28801 -10.81783 -10.73183 -10.56615 -8.94729 -8.65413 -7.86645 -5.45182 1.32296 1.39207 1.43750 1.49351 2.28661 2.41704 2.46617 3.15890 3.61295 3.75916 3.95247 4.08893 4.16597 4.22804 4.27517 4.40278 4.42889 4.48467 4.56738 4.58416 4.64622 4.72770 4.81105 4.88727 4.91315 5.01122 5.01843 5.06340 5.07605 5.09357 5.12288 5.18449 5.30497 5.38113 5.41616 5.46512 5.50999 5.51179 5.65539 5.66485 5.73327 6.01113 6.39866 6.67112 7.10170 7.29043 7.80235 8.32811 9.07488 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.010168 B = 0.006483 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.145671 B = 4318.262181 C = 5781.568241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.102 4.102 4 C -0.026 4.026 5 C 0.182 3.818 6 N -0.510 5.510 7 C -0.058 4.058 8 C 0.000 4.000 9 C 0.203 3.797 10 N -0.588 5.588 11 C -0.258 4.258 12 H 0.046 0.954 13 C -0.028 4.028 14 N -0.908 5.908 15 Si 0.939 3.061 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.282 1.282 19 C 0.146 3.854 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.145 4.145 23 N -0.555 5.555 24 H 0.414 0.586 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.166 0.834 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.254 0.746 38 H 0.036 0.964 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.026 0.974 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.136 -5.199 -6.713 12.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.141 4.141 4 C -0.065 4.065 5 C -0.082 4.082 6 N -0.231 5.231 7 C -0.206 4.206 8 C -0.120 4.120 9 C 0.075 3.925 10 N -0.308 5.308 11 C -0.388 4.388 12 H 0.064 0.936 13 C -0.225 4.225 14 N -0.552 5.552 15 Si 0.767 3.233 16 H -0.201 1.201 17 H -0.215 1.215 18 H -0.208 1.208 19 C 0.021 3.979 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.202 4.202 23 N -0.157 5.157 24 H 0.251 0.749 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.184 0.816 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.503 -5.293 -7.345 13.125 hybrid contribution 0.844 -0.515 1.952 2.188 sum -8.659 -5.808 -5.393 11.739 Atomic orbital electron populations 1.21765 0.95465 1.02140 1.01599 1.21512 0.96296 0.95034 1.02799 1.21435 0.93014 0.97958 1.01649 1.20084 0.96611 0.85652 1.04179 1.23709 0.96301 0.98527 0.89658 1.70025 1.25528 1.00351 1.27187 1.21998 1.01642 0.97823 0.99121 1.22785 1.04946 0.85882 0.98370 1.19443 0.93559 0.91862 0.87649 1.43959 1.59646 1.19942 1.07217 1.19045 0.96840 1.27169 0.95770 0.93643 1.25516 0.94154 1.03026 0.99842 1.70063 0.98077 1.40367 1.46703 0.85793 0.76737 0.80685 0.80074 1.20148 1.21474 1.20843 1.21029 0.91851 0.86879 0.98137 1.22013 0.97042 0.97200 0.99960 1.21447 0.96138 0.96592 1.01258 1.21715 0.96202 1.01709 1.00614 1.43246 1.37122 1.10906 1.24414 0.74858 0.91466 0.93458 0.92796 0.90677 0.91485 0.93891 0.91995 0.89635 0.88236 0.81639 0.90170 0.92044 0.93616 0.94536 0.93387 0.93017 0.95487 0.92219 0.91280 0.93285 0.93802 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.91 71.98 0.71 -1.93 16 2 C -0.12 -2.19 5.93 30.60 0.18 -2.01 16 3 C -0.10 -2.52 5.17 30.60 0.16 -2.37 16 4 C -0.03 -0.69 5.84 29.85 0.17 -0.51 16 5 C 0.18 6.49 7.43 138.13 1.03 7.51 16 6 N -0.51 -19.94 11.21 -188.13 -2.11 -22.05 16 7 C -0.06 -2.32 10.38 83.52 0.87 -1.45 16 8 C 0.00 0.00 6.74 40.95 0.28 0.27 16 9 C 0.20 9.15 5.93 85.63 0.51 9.66 16 10 N -0.59 -27.95 2.45 -706.35 -1.73 -29.68 16 11 C -0.26 -13.46 9.44 84.03 0.79 -12.67 16 12 H 0.05 2.47 7.94 -2.91 -0.02 2.45 16 13 C -0.03 -1.43 4.98 84.86 0.42 -1.00 16 14 N -0.91 -49.24 11.29 21.65 0.24 -48.99 16 15 Si 0.94 41.65 29.62 68.60 2.03 43.68 16 16 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 C 0.15 5.99 5.71 86.38 0.49 6.48 16 20 C -0.12 -4.47 5.54 30.59 0.17 -4.30 16 21 C -0.12 -3.31 5.93 30.59 0.18 -3.13 16 22 C -0.14 -3.67 9.91 71.98 0.71 -2.96 16 23 N -0.55 -21.72 6.15 -174.60 -1.07 -22.79 16 24 H 0.41 15.96 8.96 -92.71 -0.83 15.13 16 25 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.17 5.99 8.01 -2.91 -0.02 5.96 16 35 H 0.08 4.09 5.32 -2.39 -0.01 4.08 16 36 H 0.06 2.59 7.83 -2.39 -0.02 2.57 16 37 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 38 H 0.04 1.54 8.04 -2.38 -0.02 1.52 16 39 H 0.05 1.82 7.86 -2.39 -0.02 1.80 16 40 H 0.05 1.98 6.56 -2.38 -0.02 1.96 16 41 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -58.92 371.85 4.14 -54.78 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.10 Total: 33.46 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 6.68 Total: -8.41 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -4.67 Total: -123.51 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -58.92 4.14 -54.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141071533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.304 kcal (2) G-P(sol) polarization free energy of solvation -58.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds