Wall clock time and date at job start Fri Apr 10 2020 17:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30839 * 125.90317 * 2 1 4 4 N 1.40078 * 108.21228 * 180.02562 * 3 2 1 5 5 C 1.46503 * 126.03994 * 180.25878 * 4 3 2 6 6 C 1.52997 * 109.47477 * 246.81257 * 5 4 3 7 7 C 1.52999 * 109.46734 * 6.81546 * 5 4 3 8 8 C 1.53003 * 109.46732 * 126.81655 * 5 4 3 9 9 C 1.34950 * 107.92159 * 0.02562 * 4 3 2 10 10 C 1.50700 * 126.12528 * 179.97438 * 9 4 3 11 11 C 1.35314 * 107.74963 * 359.97438 * 9 4 3 12 12 C 1.50699 * 126.04353 * 180.02562 * 11 9 4 13 13 N 1.46899 * 109.47060 * 89.99721 * 12 11 9 14 14 C 1.46897 * 111.00083 * 293.95797 * 13 12 11 15 15 C 1.46898 * 110.99754 * 170.00172 * 13 12 11 16 16 C 1.50708 * 109.46854 * 190.00314 * 15 13 12 17 17 H 1.07993 * 119.99946 * 0.02562 * 16 15 13 18 18 C 1.37879 * 119.99626 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00105 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99652 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46925 * 60.00026 * 20 18 16 22 22 H 1.48505 * 109.47152 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47306 * 299.99736 * 20 18 16 24 24 H 1.08996 * 109.47568 * 269.97432 * 1 2 3 25 25 H 1.08997 * 109.47383 * 29.97677 * 1 2 3 26 26 H 1.09002 * 109.46992 * 149.97576 * 1 2 3 27 27 H 1.09005 * 109.47208 * 65.36517 * 6 5 4 28 28 H 1.08997 * 109.47291 * 185.36772 * 6 5 4 29 29 H 1.08997 * 109.47279 * 305.37393 * 6 5 4 30 30 H 1.08998 * 109.46900 * 60.00329 * 7 5 4 31 31 H 1.08997 * 109.46542 * 179.97438 * 7 5 4 32 32 H 1.08993 * 109.47463 * 299.99608 * 7 5 4 33 33 H 1.09000 * 109.47643 * 59.99893 * 8 5 4 34 34 H 1.09003 * 109.46907 * 180.02562 * 8 5 4 35 35 H 1.09006 * 109.47105 * 299.99746 * 8 5 4 36 36 H 1.09005 * 109.47115 * 88.38961 * 10 9 4 37 37 H 1.08996 * 109.47611 * 208.38765 * 10 9 4 38 38 H 1.09000 * 109.47556 * 328.39074 * 10 9 4 39 39 H 1.09001 * 109.47230 * 210.00162 * 12 11 9 40 40 H 1.09005 * 109.46662 * 329.99974 * 12 11 9 41 41 H 1.08996 * 109.47416 * 60.00003 * 14 13 12 42 42 H 1.09002 * 109.46778 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.47074 * 299.99844 * 14 13 12 44 44 H 1.08996 * 109.47245 * 309.99983 * 15 13 12 45 45 H 1.09000 * 109.47229 * 70.00751 * 15 13 12 46 46 H 0.97004 * 119.99763 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5008 0.0046 6 6 5.5385 1.3507 -1.3213 7 6 4.3535 2.9565 0.1819 8 6 5.7112 1.1002 1.1585 9 6 3.6141 -0.7154 -0.0015 10 6 4.8350 -1.5989 -0.0030 11 6 2.3271 -1.1331 -0.0009 12 6 1.8598 -2.5658 -0.0011 13 7 1.7088 -3.0317 1.3839 14 6 3.0091 -3.0881 2.0651 15 6 1.0332 -4.3353 1.4300 16 6 0.6766 -4.6660 2.8564 17 1 0.9264 -3.9766 3.6492 18 6 0.0314 -5.8488 3.1492 19 7 -0.2733 -6.6881 2.1836 20 14 -0.4101 -6.2591 4.9173 21 1 -1.3158 -5.2132 5.4568 22 1 -1.0931 -7.5769 4.9640 23 1 0.8273 -6.3131 5.7367 24 1 -0.3634 -0.0005 1.0276 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 4.9164 1.7254 -2.1342 28 1 6.4664 1.9211 -1.2813 29 1 5.7657 0.2986 -1.4932 30 1 3.8203 3.0633 1.1266 31 1 5.2323 3.6012 0.1862 32 1 3.6971 3.2418 -0.6401 33 1 6.0221 0.0631 1.0322 34 1 6.5899 1.7453 1.1627 35 1 5.1780 1.2072 2.1032 36 1 5.1469 -1.7892 1.0240 37 1 4.5990 -2.5440 -0.4920 38 1 5.6421 -1.1026 -0.5418 39 1 0.9008 -2.6351 -0.5144 40 1 2.5931 -3.1870 -0.5155 41 1 3.4562 -2.0942 2.0775 42 1 2.8683 -3.4365 3.0883 43 1 3.6675 -3.7761 1.5347 44 1 0.1252 -4.2954 0.8284 45 1 1.6979 -5.1032 1.0343 46 1 -0.7275 -7.5201 2.3896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142155831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:59 Heat of formation + Delta-G solvation = 69.475674 kcal Electronic energy + Delta-G solvation = -22962.165977 eV Core-core repulsion = 19888.374693 eV Total energy + Delta-G solvation = -3073.791283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.30529 -37.22842 -36.15506 -32.83934 -32.40526 -31.15496 -28.54929 -27.69121 -27.36320 -27.10914 -26.90775 -25.47906 -23.39801 -20.97197 -20.33513 -18.78929 -18.67675 -16.38917 -16.08302 -15.53038 -14.77492 -14.60869 -14.51370 -14.14744 -13.79722 -13.57751 -13.31398 -13.19100 -13.07958 -12.53925 -12.42077 -12.36693 -12.25321 -12.09728 -11.91739 -11.91272 -11.82738 -11.56914 -11.26239 -11.17464 -10.97117 -10.89161 -10.69179 -10.59861 -10.34717 -10.03035 -9.77093 -9.15964 -8.67910 -8.37992 -7.91839 -7.05901 -5.96683 -3.97351 2.15493 2.62364 3.13261 3.37134 3.40870 3.44469 4.31412 4.48546 4.56853 4.66312 4.81933 5.01776 5.07072 5.22517 5.29107 5.31664 5.39354 5.42615 5.48338 5.50447 5.54667 5.59745 5.64130 5.71631 5.72148 5.95181 5.96581 5.97956 6.04504 6.09087 6.25592 6.32973 6.37700 6.41184 6.53856 6.65536 6.84075 7.11248 7.37102 7.40173 7.43658 7.88217 8.12506 8.18908 8.33361 8.66278 9.10606 9.66484 11.14075 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.004061 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.875535 B = 6892.549507 C = 7165.375801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.091 3.909 3 N -0.305 5.305 4 N -0.367 5.367 5 C 0.185 3.815 6 C -0.164 4.164 7 C -0.139 4.139 8 C -0.168 4.168 9 C 0.084 3.916 10 C -0.097 4.097 11 C -0.208 4.208 12 C 0.131 3.869 13 N -0.533 5.533 14 C 0.040 3.960 15 C 0.193 3.807 16 C -0.504 4.504 17 H 0.062 0.938 18 C 0.055 3.945 19 N -0.900 5.900 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.278 1.278 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.024 0.976 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.007 0.993 44 H 0.029 0.971 45 H -0.011 1.011 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.232 15.691 -6.730 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 N -0.127 5.127 4 N -0.151 5.151 5 C 0.102 3.898 6 C -0.222 4.222 7 C -0.197 4.197 8 C -0.226 4.226 9 C -0.043 4.043 10 C -0.154 4.154 11 C -0.220 4.220 12 C 0.002 3.998 13 N -0.257 5.257 14 C -0.108 4.108 15 C 0.068 3.932 16 C -0.542 4.542 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.540 5.540 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.204 1.204 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.042 0.958 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.025 0.975 44 H 0.048 0.952 45 H 0.007 0.993 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.999 17.211 -6.515 21.969 hybrid contribution 0.256 -1.823 0.566 1.926 sum 12.255 15.388 -5.949 20.551 Atomic orbital electron populations 1.20116 0.86896 1.02350 1.03250 1.22138 0.96722 0.90183 0.98454 1.77184 0.86132 1.22570 1.26766 1.48514 1.04703 1.03444 1.58442 1.20538 0.82299 0.90830 0.96145 1.22352 1.00446 1.03158 0.96218 1.21852 1.01581 0.92503 1.03767 1.22396 0.99215 1.03088 0.97887 1.20626 0.96629 0.84443 1.02612 1.20743 0.93172 0.98395 1.03133 1.19742 0.90747 0.96528 1.14955 1.20274 0.99241 0.88882 0.91389 1.62084 1.19801 1.31478 1.12343 1.22258 0.90328 0.98197 1.00041 1.19724 0.93211 0.82675 0.97625 1.21138 1.37057 1.03153 0.92884 0.92031 1.24971 0.96051 0.96300 0.97262 1.69949 1.41741 1.10596 1.31711 0.86592 0.78600 0.77387 0.84999 1.20190 1.21413 1.20385 0.90250 0.91908 0.90437 0.91741 0.90681 0.91439 0.91534 0.91426 0.91323 0.91017 0.90620 0.91565 0.90152 0.89955 0.91361 0.90919 0.95848 0.93683 0.91294 0.97469 0.95248 0.99342 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.26 36.00 0.37 -0.64 16 2 C 0.09 1.57 7.22 -82.41 -0.59 0.97 16 3 N -0.30 -5.10 11.64 33.67 0.39 -4.71 16 4 N -0.37 -5.33 3.46 -44.53 -0.15 -5.48 16 5 C 0.19 1.98 1.06 -131.82 -0.14 1.84 16 6 C -0.16 -1.43 8.58 37.16 0.32 -1.11 16 7 C -0.14 -1.39 8.01 37.16 0.30 -1.09 16 8 C -0.17 -1.54 8.37 37.16 0.31 -1.23 16 9 C 0.08 1.27 5.50 -82.26 -0.45 0.81 16 10 C -0.10 -1.16 7.10 36.01 0.26 -0.91 16 11 C -0.21 -3.63 4.99 -105.05 -0.52 -4.15 16 12 C 0.13 2.49 5.05 -4.98 -0.03 2.47 16 13 N -0.53 -11.83 4.74 -245.83 -1.17 -13.00 16 14 C 0.04 0.82 8.18 60.06 0.49 1.31 16 15 C 0.19 5.08 4.72 -4.97 -0.02 5.06 16 16 C -0.50 -14.32 8.46 -34.44 -0.29 -14.61 16 17 H 0.06 1.75 7.12 -52.49 -0.37 1.37 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 20 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.13 7.25 -51.93 -0.38 0.75 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.59 5.51 -51.93 -0.29 0.31 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 33 H 0.07 0.65 5.07 -51.93 -0.26 0.38 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.94 6.55 -51.93 -0.34 0.60 16 37 H 0.08 1.02 7.10 -51.93 -0.37 0.65 16 38 H 0.07 0.65 4.83 -51.93 -0.25 0.40 16 39 H 0.07 1.38 7.04 -51.93 -0.37 1.01 16 40 H 0.02 0.43 7.10 -51.93 -0.37 0.07 16 41 H 0.04 0.82 5.20 -51.93 -0.27 0.55 16 42 H 0.07 1.50 6.76 -51.93 -0.35 1.15 16 43 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 45 H -0.01 -0.31 8.12 -51.93 -0.42 -0.74 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 352.23 15.07 5.31 5.31 Total: -1.00 -32.07 352.23 -7.82 -39.89 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -7.81 Total: -2.89 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.10 Total: -9.80 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: -0.19 Total: -49.37 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.07 -7.82 -39.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142155831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.368 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds