Wall clock time and date at job start Fri Apr 10 2020 17:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30839 * 125.90317 * 2 1 4 4 N 1.40078 * 108.21228 * 180.02562 * 3 2 1 5 5 C 1.46503 * 126.03994 * 180.25878 * 4 3 2 6 6 C 1.52997 * 109.47477 * 246.81257 * 5 4 3 7 7 C 1.52999 * 109.46734 * 6.81546 * 5 4 3 8 8 C 1.53003 * 109.46732 * 126.81655 * 5 4 3 9 9 C 1.34950 * 107.92159 * 0.02562 * 4 3 2 10 10 C 1.50700 * 126.12528 * 179.97438 * 9 4 3 11 11 C 1.35314 * 107.74963 * 359.97438 * 9 4 3 12 12 C 1.50699 * 126.04353 * 180.02562 * 11 9 4 13 13 N 1.46899 * 109.47060 * 89.99721 * 12 11 9 14 14 C 1.46897 * 111.00083 * 293.95797 * 13 12 11 15 15 C 1.46898 * 110.99754 * 170.00172 * 13 12 11 16 16 C 1.50708 * 109.46854 * 190.00314 * 15 13 12 17 17 H 1.07993 * 119.99946 * 0.02562 * 16 15 13 18 18 C 1.37879 * 119.99626 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00105 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99652 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46925 * 60.00026 * 20 18 16 22 22 H 1.48505 * 109.47152 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47306 * 299.99736 * 20 18 16 24 24 H 1.08996 * 109.47568 * 269.97432 * 1 2 3 25 25 H 1.08997 * 109.47383 * 29.97677 * 1 2 3 26 26 H 1.09002 * 109.46992 * 149.97576 * 1 2 3 27 27 H 1.09005 * 109.47208 * 65.36517 * 6 5 4 28 28 H 1.08997 * 109.47291 * 185.36772 * 6 5 4 29 29 H 1.08997 * 109.47279 * 305.37393 * 6 5 4 30 30 H 1.08998 * 109.46900 * 60.00329 * 7 5 4 31 31 H 1.08997 * 109.46542 * 179.97438 * 7 5 4 32 32 H 1.08993 * 109.47463 * 299.99608 * 7 5 4 33 33 H 1.09000 * 109.47643 * 59.99893 * 8 5 4 34 34 H 1.09003 * 109.46907 * 180.02562 * 8 5 4 35 35 H 1.09006 * 109.47105 * 299.99746 * 8 5 4 36 36 H 1.09005 * 109.47115 * 88.38961 * 10 9 4 37 37 H 1.08996 * 109.47611 * 208.38765 * 10 9 4 38 38 H 1.09000 * 109.47556 * 328.39074 * 10 9 4 39 39 H 1.09001 * 109.47230 * 210.00162 * 12 11 9 40 40 H 1.09005 * 109.46662 * 329.99974 * 12 11 9 41 41 H 1.08996 * 109.47416 * 60.00003 * 14 13 12 42 42 H 1.09002 * 109.46778 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.47074 * 299.99844 * 14 13 12 44 44 H 1.08996 * 109.47245 * 309.99983 * 15 13 12 45 45 H 1.09000 * 109.47229 * 70.00751 * 15 13 12 46 46 H 0.97004 * 119.99763 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5008 0.0046 6 6 5.5385 1.3507 -1.3213 7 6 4.3535 2.9565 0.1819 8 6 5.7112 1.1002 1.1585 9 6 3.6141 -0.7154 -0.0015 10 6 4.8350 -1.5989 -0.0030 11 6 2.3271 -1.1331 -0.0009 12 6 1.8598 -2.5658 -0.0011 13 7 1.7088 -3.0317 1.3839 14 6 3.0091 -3.0881 2.0651 15 6 1.0332 -4.3353 1.4300 16 6 0.6766 -4.6660 2.8564 17 1 0.9264 -3.9766 3.6492 18 6 0.0314 -5.8488 3.1492 19 7 -0.2733 -6.6881 2.1836 20 14 -0.4101 -6.2591 4.9173 21 1 -1.3158 -5.2132 5.4568 22 1 -1.0931 -7.5769 4.9640 23 1 0.8273 -6.3131 5.7367 24 1 -0.3634 -0.0005 1.0276 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 4.9164 1.7254 -2.1342 28 1 6.4664 1.9211 -1.2813 29 1 5.7657 0.2986 -1.4932 30 1 3.8203 3.0633 1.1266 31 1 5.2323 3.6012 0.1862 32 1 3.6971 3.2418 -0.6401 33 1 6.0221 0.0631 1.0322 34 1 6.5899 1.7453 1.1627 35 1 5.1780 1.2072 2.1032 36 1 5.1469 -1.7892 1.0240 37 1 4.5990 -2.5440 -0.4920 38 1 5.6421 -1.1026 -0.5418 39 1 0.9008 -2.6351 -0.5144 40 1 2.5931 -3.1870 -0.5155 41 1 3.4562 -2.0942 2.0775 42 1 2.8683 -3.4365 3.0883 43 1 3.6675 -3.7761 1.5347 44 1 0.1252 -4.2954 0.8284 45 1 1.6979 -5.1032 1.0343 46 1 -0.7275 -7.5201 2.3896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142155831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:13:59 Heat of formation + Delta-G solvation = 49.276499 kcal Electronic energy + Delta-G solvation = -22963.041879 eV Core-core repulsion = 19888.374693 eV Total energy + Delta-G solvation = -3074.667185 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.48639 -38.47049 -37.57733 -34.76086 -33.70918 -32.49586 -29.92619 -28.91641 -28.37980 -28.33529 -28.04407 -26.95929 -25.18909 -22.46793 -21.72826 -20.10089 -19.75565 -18.45493 -17.20591 -16.88413 -16.51734 -15.92895 -15.68045 -15.49178 -15.13475 -14.89976 -14.67789 -14.29886 -14.22789 -13.95823 -13.56557 -13.50565 -13.27471 -13.20380 -13.07619 -13.02657 -12.98571 -12.80340 -12.67440 -12.64214 -12.54559 -12.32522 -12.17449 -12.06285 -11.86608 -11.72327 -11.34970 -11.14635 -10.57752 -9.85428 -9.23266 -8.83885 -8.16055 -6.25965 0.96453 1.42241 1.45520 1.53260 1.59762 1.80720 2.43535 3.15802 3.42552 3.62604 3.74463 3.79820 3.91023 3.98958 4.08955 4.23691 4.41501 4.52567 4.55980 4.60597 4.62867 4.64061 4.71982 4.74043 4.76068 4.76395 4.82117 4.85551 4.89279 4.96993 5.09194 5.10503 5.16399 5.19438 5.23563 5.27023 5.32584 5.35940 5.40149 5.68813 5.85117 6.10716 6.30327 6.43673 6.72285 6.89440 6.90539 7.43435 8.94260 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.004061 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.875535 B = 6892.549507 C = 7165.375801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.073 3.927 3 N -0.323 5.323 4 N -0.361 5.361 5 C 0.170 3.830 6 C -0.159 4.159 7 C -0.135 4.135 8 C -0.165 4.165 9 C 0.094 3.906 10 C -0.097 4.097 11 C -0.241 4.241 12 C 0.140 3.860 13 N -0.542 5.542 14 C 0.049 3.951 15 C 0.209 3.791 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.004 3.996 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.268 1.268 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.016 0.984 44 H 0.004 0.996 45 H -0.037 1.037 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.462 16.892 -6.191 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.092 4.092 3 N -0.145 5.145 4 N -0.144 5.144 5 C 0.089 3.911 6 C -0.217 4.217 7 C -0.193 4.193 8 C -0.223 4.223 9 C -0.035 4.035 10 C -0.154 4.154 11 C -0.253 4.253 12 C 0.011 3.989 13 N -0.266 5.266 14 C -0.099 4.099 15 C 0.083 3.917 16 C -0.559 4.559 17 H 0.077 0.923 18 C -0.194 4.194 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.193 1.193 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.126 0.874 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.034 0.966 44 H 0.022 0.978 45 H -0.019 1.019 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.246 18.450 -5.983 24.065 hybrid contribution -0.351 -2.100 0.336 2.156 sum 13.895 16.350 -5.647 22.187 Atomic orbital electron populations 1.20103 0.86255 1.03080 1.02858 1.22411 0.97572 0.90358 0.98889 1.77131 0.87346 1.22706 1.27334 1.48957 1.04976 1.03773 1.56709 1.21068 0.81372 0.90553 0.98151 1.22343 1.01261 1.03760 0.94299 1.21846 1.02585 0.92766 1.02099 1.22413 0.99671 1.04135 0.96055 1.21000 0.96876 0.85115 1.00474 1.20860 0.92682 0.97884 1.04004 1.19642 0.92106 0.95402 1.18106 1.20146 0.99067 0.90252 0.89404 1.62012 1.21058 1.28795 1.14731 1.22178 0.89534 0.99493 0.98680 1.19370 0.92033 0.84073 0.96245 1.21415 1.37403 1.03477 0.93645 0.92325 1.25857 0.95700 0.96035 1.01815 1.70075 1.42295 1.11051 1.34017 0.85489 0.78645 0.77295 0.79492 1.19580 1.20735 1.19283 0.91113 0.90169 0.90710 0.92861 0.87418 0.91338 0.93396 0.88077 0.92720 0.90634 0.87357 0.93397 0.89427 0.90342 0.88344 0.91880 0.95351 0.91591 0.93209 0.96577 0.97795 1.01888 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.98 10.26 71.23 0.73 -1.25 16 2 C 0.07 2.53 7.22 43.10 0.31 2.85 16 3 N -0.32 -10.72 11.64 -47.39 -0.55 -11.27 16 4 N -0.36 -9.98 3.46 -294.81 -1.02 -11.00 16 5 C 0.17 3.19 1.06 3.60 0.00 3.19 16 6 C -0.16 -2.22 8.58 71.98 0.62 -1.60 16 7 C -0.14 -2.41 8.01 71.98 0.58 -1.84 16 8 C -0.16 -2.48 8.37 71.98 0.60 -1.88 16 9 C 0.09 2.73 5.50 41.40 0.23 2.96 16 10 C -0.10 -2.09 7.10 71.24 0.51 -1.59 16 11 C -0.24 -8.40 4.99 -20.14 -0.10 -8.50 16 12 C 0.14 5.44 5.05 85.56 0.43 5.87 16 13 N -0.54 -24.59 4.74 -931.65 -4.42 -29.01 16 14 C 0.05 1.99 8.18 127.69 1.04 3.03 16 15 C 0.21 11.42 4.72 85.56 0.40 11.83 16 16 C -0.52 -30.19 8.46 25.60 0.22 -29.97 16 17 H 0.06 3.36 7.12 -2.91 -0.02 3.34 16 18 C 0.00 0.22 5.46 84.66 0.46 0.69 16 19 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 20 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.07 2.28 7.25 -2.39 -0.02 2.26 16 27 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.95 5.51 -2.39 -0.01 0.94 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.12 8.11 -2.39 -0.02 1.10 16 33 H 0.07 1.08 5.07 -2.39 -0.01 1.07 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.09 1.82 6.55 -2.38 -0.02 1.80 16 37 H 0.08 1.80 7.10 -2.39 -0.02 1.78 16 38 H 0.10 1.53 4.83 -2.39 -0.01 1.52 16 39 H 0.06 2.52 7.04 -2.39 -0.02 2.50 16 40 H 0.03 1.06 7.10 -2.38 -0.02 1.05 16 41 H 0.07 2.35 5.20 -2.39 -0.01 2.34 16 42 H 0.05 2.17 6.76 -2.39 -0.02 2.15 16 43 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.00 0.23 7.93 -2.39 -0.02 0.21 16 45 H -0.04 -2.14 8.12 -2.39 -0.02 -2.16 16 46 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -70.44 352.23 3.30 -67.14 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.95 Total: 9.86 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 6.03 Total: -16.22 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -5.71 Total: -107.76 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.44 3.30 -67.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142155831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.412 kcal (2) G-P(sol) polarization free energy of solvation -70.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds