Wall clock time and date at job start Fri Apr 10 2020 17:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46847 * 2 1 4 4 C 1.53004 * 109.46824 * 240.00326 * 2 1 3 5 5 C 1.53000 * 109.46597 * 174.04700 * 4 2 1 6 6 C 1.50696 * 109.46901 * 186.19634 * 5 4 2 7 7 H 1.08004 * 119.99832 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00247 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00083 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 119.99820 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47553 * 270.00544 * 10 8 6 12 12 H 1.48501 * 109.47063 * 150.00227 * 10 8 6 13 13 H 1.48506 * 109.46950 * 30.00279 * 10 8 6 14 14 N 1.46898 * 109.47108 * 120.00428 * 2 1 3 15 15 C 1.46990 * 111.00105 * 83.53313 * 14 2 1 16 16 C 1.53208 * 109.90877 * 188.48613 * 15 14 2 17 17 C 1.51631 * 108.62472 * 307.18717 * 16 15 14 18 18 O 1.20756 * 121.41599 * 228.82499 * 17 16 15 19 19 C 1.51191 * 117.16403 * 48.85161 * 17 16 15 20 20 H 1.08994 * 110.14805 * 69.39538 * 19 17 16 21 21 C 1.52885 * 110.03878 * 191.05867 * 19 17 16 22 22 C 1.53176 * 108.42426 * 180.17747 * 21 19 17 23 23 C 1.52897 * 109.93049 * 300.15711 * 22 21 19 24 24 C 1.53177 * 109.93658 * 58.86332 * 23 22 21 25 25 C 1.46471 * 110.99990 * 207.63539 * 14 2 1 26 26 H 1.08997 * 109.30417 * 289.46819 * 25 14 2 27 27 H 1.08997 * 109.47040 * 301.36688 * 1 2 3 28 28 H 1.09003 * 109.46702 * 61.36013 * 1 2 3 29 29 H 1.08993 * 109.47265 * 181.36058 * 1 2 3 30 30 H 1.08994 * 109.47140 * 54.04665 * 4 2 1 31 31 H 1.08998 * 109.46788 * 294.04225 * 4 2 1 32 32 H 1.09007 * 109.47333 * 66.19686 * 5 4 2 33 33 H 1.08997 * 109.47488 * 306.19503 * 5 4 2 34 34 H 0.97003 * 119.99574 * 179.97438 * 9 8 6 35 35 H 1.08992 * 109.40453 * 308.62706 * 15 14 2 36 36 H 1.09000 * 109.39326 * 68.35882 * 15 14 2 37 37 H 1.08998 * 109.61088 * 187.44048 * 16 15 14 38 38 H 1.08995 * 109.60692 * 66.92671 * 16 15 14 39 39 H 1.08992 * 110.06950 * 60.34916 * 21 19 17 40 40 H 1.08995 * 109.64919 * 299.75477 * 21 19 17 41 41 H 1.08996 * 109.39507 * 180.02562 * 22 21 19 42 42 H 1.08995 * 109.31692 * 60.24847 * 22 21 19 43 43 H 1.09001 * 109.39303 * 298.72113 * 23 22 21 44 44 H 1.08997 * 109.39619 * 179.01071 * 23 22 21 45 45 H 1.09001 * 109.55803 * 180.69861 * 24 23 22 46 46 H 1.09001 * 109.63962 * 60.43217 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5626 -0.5929 -1.3263 6 6 4.0500 -1.1694 -2.6306 7 1 3.3441 -1.5853 -3.3344 8 6 5.3969 -1.1659 -2.9255 9 7 5.8221 -1.6686 -4.0640 10 14 6.6175 -0.4460 -1.7085 11 1 6.8051 0.9996 -1.9919 12 1 7.9192 -1.1489 -1.8386 13 1 6.0987 -0.6164 -0.3275 14 7 2.0197 -0.6926 1.1994 15 6 2.0496 -2.1475 0.9922 16 6 2.3586 -2.8565 2.3147 17 6 3.6206 -2.2559 2.9028 18 8 4.5254 -2.9526 3.2956 19 6 3.6977 -0.7478 2.9770 20 1 2.9938 -0.3720 3.7196 21 6 5.1199 -0.3127 3.3309 22 6 5.1550 1.2171 3.4005 23 6 4.7502 1.8097 2.0505 24 6 3.3431 1.3365 1.6731 25 6 3.3368 -0.1888 1.5954 26 1 4.0809 -0.5156 0.8691 27 1 -0.3633 0.5349 0.8774 28 1 -0.3633 0.4926 -0.9020 29 1 -0.3633 -1.0273 0.0244 30 1 1.5922 -0.2726 -2.1360 31 1 1.7663 -1.7750 -1.1976 32 1 4.0155 -1.1365 -0.4971 33 1 3.8422 0.4589 -1.2671 34 1 6.7696 -1.6657 -4.2715 35 1 1.0805 -2.4804 0.6208 36 1 2.8198 -2.3933 0.2612 37 1 2.5101 -3.9205 2.1328 38 1 1.5292 -2.7158 3.0077 39 1 5.8177 -0.6593 2.5687 40 1 5.4004 -0.7285 4.2986 41 1 6.1636 1.5449 3.6518 42 1 4.4612 1.5590 4.1685 43 1 5.4576 1.4867 1.2867 44 1 4.7611 2.8977 2.1149 45 1 3.0658 1.7524 0.7045 46 1 2.6306 1.6662 2.4293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:07 Heat of formation + Delta-G solvation = -49.210808 kcal Electronic energy + Delta-G solvation = -24282.122363 eV Core-core repulsion = 21170.891697 eV Total energy + Delta-G solvation = -3111.230666 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76991 -38.38017 -36.80621 -33.74164 -32.68682 -31.01315 -30.38670 -30.13470 -28.26532 -25.26198 -23.66835 -23.28217 -22.38026 -20.79260 -19.79417 -19.12674 -18.92953 -16.69396 -16.58320 -15.55041 -15.29578 -15.03831 -14.76245 -14.50325 -14.22274 -13.69424 -13.52696 -13.21220 -13.09132 -12.76727 -12.59363 -12.35677 -12.07473 -12.01121 -11.90799 -11.58995 -11.34476 -11.23232 -11.10734 -11.09159 -10.88912 -10.66502 -10.48474 -10.42362 -10.06198 -9.85091 -9.71576 -9.58147 -9.27514 -9.08882 -8.58778 -7.83516 -6.09525 -4.07414 2.10154 3.24725 3.33529 3.33967 3.97566 4.15963 4.39067 4.72114 4.74409 4.94939 5.15747 5.21219 5.21467 5.23147 5.27932 5.31355 5.42466 5.49865 5.52272 5.59249 5.65476 5.74021 5.79655 5.90225 5.94536 6.00301 6.04381 6.06495 6.15873 6.16418 6.20669 6.23343 6.25068 6.30335 6.37701 6.46892 6.48041 6.62876 6.81319 7.20708 7.24306 7.35589 7.43287 7.66724 7.74692 8.48733 8.95752 9.53070 11.03939 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.008306 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.716239 B = 3370.406219 C = 3965.438363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.065 3.935 3 H 0.086 0.914 4 C -0.136 4.136 5 C -0.017 4.017 6 C -0.521 4.521 7 H 0.071 0.929 8 C 0.068 3.932 9 N -0.902 5.902 10 Si 0.873 3.127 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.264 1.264 14 N -0.525 5.525 15 C 0.050 3.950 16 C -0.165 4.165 17 C 0.365 3.635 18 O -0.459 6.459 19 C -0.126 4.126 20 H 0.108 0.892 21 C -0.109 4.109 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.112 4.112 25 C 0.073 3.927 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.009 0.991 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 5.250 15.147 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.043 4.043 3 H 0.104 0.896 4 C -0.174 4.174 5 C -0.054 4.054 6 C -0.559 4.559 7 H 0.089 0.911 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.700 3.300 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.189 1.189 14 N -0.249 5.249 15 C -0.077 4.077 16 C -0.203 4.203 17 C 0.240 3.760 18 O -0.332 6.332 19 C -0.145 4.145 20 H 0.126 0.874 21 C -0.147 4.147 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.149 4.149 25 C -0.035 4.035 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.631 4.938 15.618 18.070 hybrid contribution 1.258 0.148 -0.272 1.295 sum -6.373 5.085 15.346 17.377 Atomic orbital electron populations 1.21740 0.94982 1.01516 1.00944 1.22049 0.94961 0.98801 0.88444 0.89639 1.22204 0.98636 1.00132 0.96463 1.19833 0.91787 0.96144 0.97597 1.21148 0.93072 1.39427 1.02215 0.91100 1.25023 0.98411 0.94873 0.95011 1.69908 1.15119 1.46039 1.22971 0.86893 0.81013 0.79549 0.82513 1.20172 1.21338 1.18887 1.62099 1.24629 1.03640 1.34527 1.22186 1.02771 0.87875 0.94918 1.22414 0.97755 1.00978 0.99117 1.24958 0.86846 0.91547 0.72608 1.90365 1.39524 1.65481 1.37867 1.21969 0.98979 0.93923 0.99654 0.87368 1.21459 0.95223 0.95725 1.02306 1.21532 1.01231 0.95044 0.97522 1.21580 0.97102 1.00060 0.97407 1.21674 0.96945 0.94069 1.02234 1.21919 0.91705 0.95298 0.94605 0.90647 0.92757 0.92678 0.93041 0.92128 0.92150 0.96224 0.97228 0.92724 0.89709 0.91975 0.89273 0.88140 0.91448 0.91271 0.91982 0.91944 0.91821 0.91703 0.90730 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.40 37.16 0.35 -1.29 16 2 C 0.06 0.96 2.35 -67.71 -0.16 0.80 16 3 H 0.09 1.26 5.02 -51.93 -0.26 1.00 16 4 C -0.14 -2.50 4.10 -26.73 -0.11 -2.61 16 5 C -0.02 -0.38 2.62 -27.88 -0.07 -0.45 16 6 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 7 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 10 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.26 -6.27 6.35 56.52 0.36 -5.91 16 14 N -0.52 -7.45 4.33 -218.80 -0.95 -8.40 16 15 C 0.05 0.73 3.98 -3.67 -0.01 0.71 16 16 C -0.16 -2.13 6.34 -27.32 -0.17 -2.31 16 17 C 0.36 5.58 6.65 -28.34 -0.19 5.39 16 18 O -0.46 -8.35 16.98 6.00 0.10 -8.25 16 19 C -0.13 -1.73 2.35 -91.41 -0.21 -1.94 16 20 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 21 C -0.11 -1.50 4.72 -26.70 -0.13 -1.63 16 22 C -0.12 -1.34 5.89 -26.69 -0.16 -1.50 16 23 C -0.12 -1.58 5.91 -26.69 -0.16 -1.73 16 24 C -0.11 -1.47 4.93 -26.78 -0.13 -1.60 16 25 C 0.07 1.09 1.12 -67.90 -0.08 1.02 16 26 H 0.08 1.43 4.50 -51.93 -0.23 1.19 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.61 7.23 -51.93 -0.38 0.24 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.11 6.00 -51.93 -0.31 0.80 16 32 H 0.02 0.46 3.13 -51.93 -0.16 0.30 16 33 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.08 1.10 6.81 -51.93 -0.35 0.75 16 36 H 0.06 1.11 5.30 -51.93 -0.28 0.83 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.03 5.84 -51.93 -0.30 0.73 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 332.26 15.07 5.01 5.01 Total: -1.00 -30.86 332.26 -9.16 -40.01 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.76 Total: 1.83 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -1.66 Total: -20.20 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.17 Total: -35.48 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.10 Total: -8.25 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.86 -9.16 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.199 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds