Wall clock time and date at job start Fri Apr 10 2020 17:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46901 * 110.99793 * 2 1 4 4 C 1.53000 * 109.46769 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.46912 * 180.02562 * 4 3 2 6 6 C 1.39867 * 126.03886 * 90.02643 * 5 4 3 7 7 C 1.50697 * 125.90188 * 359.95969 * 6 5 4 8 8 N 1.30838 * 108.19878 * 179.97438 * 6 5 4 9 9 N 1.40084 * 108.20943 * 0.02562 * 8 6 5 10 10 C 1.46497 * 126.03658 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.46982 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47217 * 299.96870 * 10 9 8 13 13 C 1.52999 * 109.47462 * 59.97657 * 10 9 8 14 14 C 1.53003 * 109.47263 * 174.99786 * 13 10 9 15 15 C 1.50700 * 109.47036 * 179.97438 * 14 13 10 16 16 H 1.08000 * 119.99860 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99783 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00329 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99843 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46779 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47199 * 119.99629 * 19 17 15 22 22 H 1.48490 * 109.47042 * 240.00125 * 19 17 15 23 23 C 1.34951 * 107.92158 * 359.75684 * 9 8 6 24 24 C 1.50704 * 126.12351 * 180.24078 * 23 9 8 25 25 H 1.08995 * 109.47087 * 60.00099 * 1 2 3 26 26 H 1.08997 * 109.46905 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46661 * 299.99622 * 1 2 3 28 28 H 1.00898 * 110.99995 * 236.04922 * 2 1 3 29 29 H 1.09001 * 109.46874 * 60.00179 * 3 2 1 30 30 H 1.08992 * 109.47407 * 300.00197 * 3 2 1 31 31 H 1.09002 * 109.47398 * 300.00295 * 4 3 2 32 32 H 1.09001 * 109.47194 * 60.00475 * 4 3 2 33 33 H 1.08998 * 109.47574 * 89.99708 * 7 6 5 34 34 H 1.09000 * 109.47215 * 209.99997 * 7 6 5 35 35 H 1.09000 * 109.47054 * 329.99544 * 7 6 5 36 36 H 1.09006 * 109.46702 * 60.00879 * 12 10 9 37 37 H 1.09006 * 109.47480 * 179.97438 * 12 10 9 38 38 H 1.08990 * 109.47580 * 300.00555 * 12 10 9 39 39 H 1.09002 * 109.46757 * 295.00042 * 13 10 9 40 40 H 1.09000 * 109.46827 * 54.99629 * 13 10 9 41 41 H 1.08998 * 109.46727 * 299.99862 * 14 13 10 42 42 H 1.09000 * 109.46962 * 59.99747 * 14 13 10 43 43 H 0.97001 * 120.00144 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.46713 * 270.19730 * 24 23 9 45 45 H 1.08994 * 109.47545 * 30.20277 * 24 23 9 46 46 H 1.09004 * 109.46574 * 150.19985 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5249 1.3306 0.0006 5 6 4.0650 2.7375 0.0013 6 6 4.3599 3.5053 1.1326 7 6 4.1916 3.0688 2.5652 8 7 4.8067 4.6680 0.7323 9 7 4.8097 4.6771 -0.6685 10 6 5.2371 5.7883 -1.5222 11 1 5.1282 5.5049 -2.5691 12 6 4.3708 7.0158 -1.2334 13 6 6.7028 6.1190 -1.2333 14 6 7.1852 7.1936 -2.2097 15 6 8.6286 7.5198 -1.9247 16 1 9.1499 7.0111 -1.1272 17 6 9.2840 8.4668 -2.6827 18 7 8.6494 9.0859 -3.6541 19 14 11.0735 8.8705 -2.3299 20 1 11.5535 8.0413 -1.1954 21 1 11.8927 8.5822 -3.5344 22 1 11.1967 10.3083 -1.9798 23 6 4.3550 3.4794 -1.0926 24 6 4.1958 3.0468 -2.5274 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8306 -0.5261 -0.7814 29 1 1.6459 1.8947 0.8900 30 1 1.6460 1.8948 -0.8899 31 1 3.8741 0.8073 0.8908 32 1 3.8748 0.8072 -0.8892 33 1 5.1102 2.5947 2.9109 34 1 3.9751 3.9376 3.1867 35 1 3.3679 2.3583 2.6342 36 1 4.4798 7.2993 -0.1865 37 1 4.6891 7.8428 -1.8683 38 1 3.3267 6.7803 -1.4392 39 1 6.7976 6.4872 -0.2117 40 1 7.3084 5.2207 -1.3534 41 1 7.0903 6.8253 -3.2312 42 1 6.5795 8.0919 -2.0896 43 1 9.1107 9.7518 -4.1876 44 1 3.1984 3.3117 -2.8781 45 1 4.9425 3.5482 -3.1431 46 1 4.3314 1.9676 -2.5986 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500211.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:11 Heat of formation + Delta-G solvation = 22.337277 kcal Electronic energy + Delta-G solvation = -21922.582517 eV Core-core repulsion = 18846.747160 eV Total energy + Delta-G solvation = -3075.835357 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.35886 -37.90739 -37.14233 -35.14702 -33.94650 -33.42942 -31.07213 -30.38002 -28.35915 -27.68368 -27.16923 -25.35748 -24.00271 -22.95570 -21.93819 -20.34789 -19.83396 -18.64196 -17.32904 -16.89115 -16.54126 -16.28671 -15.98973 -15.56476 -15.21474 -14.75873 -14.69547 -14.29578 -14.21377 -14.13241 -14.00305 -13.65679 -13.51122 -13.28575 -13.11542 -12.98858 -12.96537 -12.79669 -12.61886 -12.56539 -12.46189 -12.34800 -12.08508 -11.89945 -11.71181 -11.49606 -11.26913 -11.14131 -10.58141 -9.94002 -9.36245 -9.10684 -8.24553 -6.34662 1.00878 1.36362 1.37241 1.49975 1.60323 1.83599 2.37731 3.08721 3.37171 3.51877 3.76108 3.94930 3.96943 4.12563 4.19254 4.21097 4.36334 4.52519 4.55715 4.58459 4.61374 4.66407 4.67025 4.71110 4.76249 4.77322 4.83043 4.84595 4.95735 4.99607 5.03927 5.07722 5.10306 5.14552 5.26434 5.36194 5.43820 5.47123 5.65895 5.78052 5.92025 6.07074 6.17340 6.27983 6.53733 6.79410 6.93408 7.34009 8.86830 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.031117 B = 0.003147 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.609014 B = 8896.561647 C = 9162.551244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.702 5.702 3 C 0.073 3.927 4 C -0.022 4.022 5 C -0.248 4.248 6 C 0.060 3.940 7 C -0.067 4.067 8 N -0.336 5.336 9 N -0.367 5.367 10 C 0.162 3.838 11 H 0.111 0.889 12 C -0.146 4.146 13 C -0.094 4.094 14 C 0.033 3.967 15 C -0.546 4.546 16 H 0.049 0.951 17 C 0.006 3.994 18 N -0.926 5.926 19 Si 0.960 3.040 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.276 1.276 23 C 0.076 3.924 24 C -0.092 4.092 25 H 0.022 0.978 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.348 0.652 29 H 0.060 0.940 30 H 0.023 0.977 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.043 0.957 40 H 0.040 0.960 41 H 0.003 0.997 42 H 0.010 0.990 43 H 0.265 0.735 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.713 -17.837 4.939 24.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.333 5.333 3 C -0.057 4.057 4 C -0.061 4.061 5 C -0.260 4.260 6 C -0.106 4.106 7 C -0.125 4.125 8 N -0.158 5.158 9 N -0.148 5.148 10 C 0.061 3.939 11 H 0.129 0.871 12 C -0.203 4.203 13 C -0.132 4.132 14 C -0.005 4.005 15 C -0.584 4.584 16 H 0.067 0.933 17 C -0.192 4.192 18 N -0.566 5.566 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.201 1.201 23 C -0.052 4.052 24 C -0.150 4.150 25 H 0.040 0.960 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.166 0.834 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.021 0.979 42 H 0.028 0.972 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.177 -16.505 5.761 23.151 hybrid contribution 0.655 0.405 -1.132 1.370 sum -14.522 -16.099 4.628 22.170 Atomic orbital electron populations 1.22213 0.87279 1.02509 1.00291 1.60412 1.08350 1.14095 1.50447 1.21847 0.94655 0.89198 0.99959 1.19701 0.93458 0.89687 1.03230 1.19815 1.15882 1.00017 0.90303 1.22783 0.98039 0.91394 0.98341 1.20219 1.03573 1.01724 0.86983 1.77259 1.25867 1.22737 0.89948 1.48809 1.49966 1.11990 1.04082 1.21412 0.94763 0.85035 0.92655 0.87099 1.21995 0.99075 0.96811 1.02444 1.21663 0.92898 0.98812 0.99869 1.18978 0.94952 0.93085 0.93445 1.21614 0.98103 1.21995 1.16663 0.93283 1.25858 1.02834 0.95754 0.94767 1.70057 1.38508 1.26917 1.21150 0.85469 0.79535 0.78157 0.78336 1.19347 1.19951 1.20121 1.21521 0.98740 0.86414 0.98500 1.20588 1.03536 1.03656 0.87238 0.95978 0.90241 0.92181 0.83372 0.92125 0.95835 0.90386 0.90590 0.90003 0.91406 0.88706 0.92967 0.90550 0.91346 0.93771 0.94108 0.97913 0.97215 0.92575 0.88947 0.91353 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.70 127.69 1.37 1.69 16 2 N -0.70 -10.09 6.86 -537.14 -3.68 -13.78 16 3 C 0.07 1.24 5.67 86.30 0.49 1.73 16 4 C -0.02 -0.40 5.42 29.85 0.16 -0.24 16 5 C -0.25 -6.43 5.35 -20.14 -0.11 -6.53 16 6 C 0.06 1.78 7.22 43.10 0.31 2.09 16 7 C -0.07 -1.43 10.12 71.23 0.72 -0.71 16 8 N -0.34 -12.25 12.43 -47.39 -0.59 -12.84 16 9 N -0.37 -12.56 3.28 -314.30 -1.03 -13.59 16 10 C 0.16 5.80 3.11 44.99 0.14 5.94 16 11 H 0.11 3.58 6.68 -2.38 -0.02 3.56 16 12 C -0.15 -4.95 9.21 71.98 0.66 -4.28 16 13 C -0.09 -4.14 4.88 30.59 0.15 -3.99 16 14 C 0.03 1.71 4.73 29.85 0.14 1.85 16 15 C -0.55 -31.62 9.11 25.60 0.23 -31.38 16 16 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 17 C 0.01 0.36 5.46 84.65 0.46 0.82 16 18 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 19 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 C 0.08 2.12 6.93 41.41 0.29 2.41 16 24 C -0.09 -1.84 9.73 71.24 0.69 -1.14 16 25 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.35 3.98 8.82 -89.70 -0.79 3.19 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.08 1.41 7.92 -2.39 -0.02 1.39 16 32 H 0.08 1.19 7.14 -2.39 -0.02 1.17 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.61 7.92 -2.39 -0.02 1.59 16 36 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.08 2.71 6.56 -2.38 -0.02 2.69 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.01 0.52 6.56 -2.39 -0.02 0.51 16 43 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 44 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.07 1.46 7.11 -2.39 -0.02 1.44 16 46 H 0.10 1.58 7.14 -2.39 -0.02 1.57 16 Total: -1.00 -68.37 372.07 2.87 -65.50 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.15 Total: 14.79 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 5.71 Total: -31.75 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -5.02 Total: -95.32 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -68.37 2.87 -65.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500211.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.842 kcal (2) G-P(sol) polarization free energy of solvation -68.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds