Wall clock time and date at job start Fri Apr 10 2020 17:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86793 * 120.00144 * 2 1 4 4 H 1.48505 * 109.47115 * 85.01973 * 3 2 1 5 5 H 1.48490 * 109.47445 * 205.02374 * 3 2 1 6 6 H 1.48499 * 109.46957 * 325.02495 * 3 2 1 7 7 C 1.40309 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99831 * 189.42311 * 7 2 1 9 9 C 1.40537 * 120.00122 * 9.43235 * 7 2 1 10 10 C 1.44194 * 123.71522 * 24.03530 * 9 7 2 11 11 C 1.32764 * 114.42776 * 179.97438 * 10 9 7 12 12 S 1.75467 * 111.36605 * 0.02562 * 11 10 9 13 13 C 1.39542 * 123.71548 * 203.74658 * 9 7 2 14 14 C 1.46240 * 125.22774 * 359.97438 * 13 9 7 15 15 O 1.21760 * 119.99803 * 359.97438 * 14 13 9 16 16 N 1.34777 * 120.00173 * 180.02562 * 14 13 9 17 17 C 1.46501 * 119.99737 * 179.97438 * 16 14 13 18 18 H 1.08994 * 109.47027 * 16.54523 * 17 16 14 19 19 C 1.52997 * 109.47067 * 256.54407 * 17 16 14 20 20 N 1.46902 * 109.47163 * 54.99938 * 19 17 16 21 21 C 1.53006 * 109.46847 * 136.54656 * 17 16 14 22 22 C 1.53000 * 117.49681 * 253.19483 * 21 17 16 23 23 C 1.52995 * 117.49552 * 184.53480 * 21 17 16 24 24 H 0.96998 * 119.99753 * 0.02562 * 1 2 3 25 25 H 1.07999 * 122.78087 * 359.93330 * 10 9 7 26 26 H 1.08003 * 124.31596 * 179.97438 * 11 10 9 27 27 H 0.96995 * 120.00095 * 359.97438 * 16 14 13 28 28 H 1.08999 * 109.47218 * 175.00410 * 19 17 16 29 29 H 1.09002 * 109.47283 * 295.00659 * 19 17 16 30 30 H 1.00894 * 110.99934 * 179.97438 * 20 19 17 31 31 H 1.00899 * 111.00503 * 303.95855 * 20 19 17 32 32 H 1.08992 * 115.54995 * 38.86596 * 21 17 16 33 33 H 1.08998 * 117.49948 * 0.02562 * 22 21 17 34 34 H 1.08995 * 117.49759 * 145.02161 * 22 21 17 35 35 H 1.08998 * 117.50109 * 214.97909 * 23 21 17 36 36 H 1.09004 * 117.50134 * 0.02562 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3827 2.1071 1.3948 5 1 3.5866 1.4121 -0.5922 6 1 1.4944 2.6199 -0.8026 7 6 2.0080 -1.2151 0.0005 8 1 3.0770 -1.2214 0.1537 9 6 1.3195 -2.4241 -0.1984 10 6 0.0545 -2.5214 -0.8836 11 6 -0.4311 -3.7542 -0.9673 12 16 0.6377 -4.9157 -0.2010 13 6 1.7876 -3.6632 0.2404 14 6 3.0418 -3.8849 0.9591 15 8 3.7697 -2.9437 1.2179 16 7 3.3925 -5.1311 1.3341 17 6 4.6492 -5.3531 2.0536 18 1 5.0135 -4.4052 2.4495 19 6 5.6886 -5.9389 1.0958 20 7 5.8297 -5.0587 -0.0717 21 6 4.4108 -6.3297 3.2070 22 6 4.4047 -5.7586 4.6264 23 6 5.5834 -6.6105 4.1487 24 1 -0.4850 0.8400 -0.0004 25 1 -0.4558 -1.6626 -1.2940 26 1 -1.3653 -4.0094 -1.4454 27 1 2.8129 -5.8808 1.1276 28 1 6.6478 -6.0214 1.6068 29 1 5.3650 -6.9271 0.7687 30 1 6.5114 -5.4239 -0.7196 31 1 4.9401 -4.9143 -0.5255 32 1 3.7292 -7.1528 2.9928 33 1 4.5702 -4.6871 4.7385 34 1 3.7194 -6.2063 5.3461 35 1 5.6731 -7.6182 4.5543 36 1 6.5247 -6.0991 3.9468 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867959727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:16:02 Heat of formation + Delta-G solvation = -15.867730 kcal Electronic energy + Delta-G solvation = -19624.711727 eV Core-core repulsion = 16620.587696 eV Total energy + Delta-G solvation = -3004.124031 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.51979 -38.69168 -37.63667 -35.74562 -34.88034 -33.80793 -30.87918 -29.33887 -27.49387 -24.36394 -23.60523 -23.01899 -21.76127 -21.38429 -20.55609 -19.10427 -17.82555 -17.46201 -17.10316 -16.55910 -16.22838 -15.55717 -15.53206 -15.21825 -15.08025 -14.51155 -14.20105 -13.96849 -13.69668 -13.30933 -13.14443 -13.08963 -12.82471 -12.72470 -12.39779 -12.13589 -12.06743 -11.97798 -11.43302 -11.37202 -11.06112 -10.99971 -10.23737 -9.90109 -9.48024 -9.30651 -8.91119 -8.83252 -6.41675 0.34440 1.33285 1.34539 1.38567 1.48727 1.80541 2.00676 2.18540 2.49400 2.64257 2.96410 3.36103 3.48749 3.97202 4.01831 4.12711 4.20774 4.36917 4.39648 4.58174 4.67254 4.77241 4.82528 4.99275 5.02830 5.06172 5.25228 5.28576 5.34442 5.41980 5.60786 5.84098 5.90815 6.21078 6.44102 6.58974 6.62440 6.76629 7.04870 7.87466 8.10379 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.005823 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.498078 B = 4807.373052 C = 5610.239879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.036 3.964 3 Si 0.987 3.013 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.248 1.248 7 C -0.418 4.418 8 H 0.084 0.916 9 C 0.112 3.888 10 C -0.128 4.128 11 C -0.195 4.195 12 S 0.009 5.991 13 C -0.463 4.463 14 C 0.598 3.402 15 O -0.591 6.591 16 N -0.727 5.727 17 C 0.176 3.824 18 H 0.062 0.938 19 C 0.063 3.937 20 N -0.860 5.860 21 C -0.170 4.170 22 C -0.188 4.188 23 C -0.146 4.146 24 H 0.299 0.701 25 H 0.139 0.861 26 H 0.175 0.825 27 H 0.395 0.605 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.347 0.653 31 H 0.334 0.666 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.158 -10.466 2.138 11.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.190 1.190 6 H -0.171 1.171 7 C -0.449 4.449 8 H 0.102 0.898 9 C 0.101 3.899 10 C -0.161 4.161 11 C -0.329 4.329 12 S 0.265 5.735 13 C -0.582 4.582 14 C 0.394 3.606 15 O -0.475 6.475 16 N -0.379 5.379 17 C 0.070 3.930 18 H 0.080 0.920 19 C -0.068 4.068 20 N -0.391 5.391 21 C -0.190 4.190 22 C -0.225 4.225 23 C -0.183 4.183 24 H 0.111 0.889 25 H 0.156 0.844 26 H 0.192 0.808 27 H 0.229 0.771 28 H 0.109 0.891 29 H 0.059 0.941 30 H 0.161 0.839 31 H 0.147 0.853 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.646 -10.671 3.054 12.033 hybrid contribution -0.557 1.265 -0.829 1.612 sum 4.089 -9.405 2.225 10.494 Atomic orbital electron populations 1.69657 1.08723 1.31723 1.32081 1.27005 0.95759 1.04754 0.90827 0.85118 0.79109 0.75510 0.79603 1.19017 1.19044 1.17149 1.19989 0.96784 0.90663 1.37446 0.89838 1.18364 0.90786 0.92497 0.88261 1.21620 0.96517 0.97079 1.00880 1.25433 1.04266 0.96300 1.06901 1.82265 1.16088 1.11891 1.63263 1.23125 1.06414 0.97082 1.31556 1.16895 0.83946 0.82271 0.77484 1.90645 1.54646 1.42865 1.59365 1.45600 1.23424 1.08020 1.60863 1.20460 0.83941 0.97583 0.90980 0.92019 1.22085 0.99102 0.93526 0.92120 1.58535 1.14587 1.53311 1.12658 1.22468 1.04467 1.01439 0.90602 1.23028 1.03126 0.99385 0.96963 1.23021 0.92526 1.01878 1.00910 0.88944 0.84353 0.80790 0.77067 0.89141 0.94073 0.83934 0.85280 0.86459 0.90812 0.87509 0.86068 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.40 10.83 21.89 0.24 -39.17 16 2 C 0.04 1.82 5.40 85.37 0.46 2.28 16 3 Si 0.99 39.50 29.57 68.60 2.03 41.53 16 4 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.25 -8.79 7.11 99.48 0.71 -8.09 16 7 C -0.42 -23.79 8.51 23.33 0.20 -23.60 16 8 H 0.08 5.12 6.05 -2.91 -0.02 5.10 16 9 C 0.11 6.17 5.67 -20.89 -0.12 6.05 16 10 C -0.13 -6.30 9.04 22.61 0.20 -6.10 16 11 C -0.19 -8.14 11.07 66.64 0.74 -7.40 16 12 S 0.01 0.38 22.25 -56.49 -1.26 -0.88 16 13 C -0.46 -23.58 6.51 24.67 0.16 -23.42 16 14 C 0.60 29.60 6.86 86.32 0.59 30.19 16 15 O -0.59 -33.78 13.86 -4.54 -0.06 -33.84 16 16 N -0.73 -27.63 4.29 -446.89 -1.92 -29.55 16 17 C 0.18 5.73 2.74 44.99 0.12 5.85 16 18 H 0.06 2.53 6.87 -2.39 -0.02 2.51 16 19 C 0.06 1.74 6.36 86.30 0.55 2.29 16 20 N -0.86 -27.79 9.58 -186.72 -1.79 -29.58 16 21 C -0.17 -4.23 5.37 -10.79 -0.06 -4.29 16 22 C -0.19 -4.60 10.18 30.62 0.31 -4.29 16 23 C -0.15 -2.80 9.88 30.62 0.30 -2.50 16 24 H 0.30 13.04 8.29 -92.71 -0.77 12.27 16 25 H 0.14 6.82 6.42 -2.91 -0.02 6.81 16 26 H 0.17 5.82 8.06 -2.91 -0.02 5.79 16 27 H 0.40 13.47 7.87 -92.71 -0.73 12.74 16 28 H 0.09 2.15 7.78 -2.39 -0.02 2.13 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.35 8.97 9.08 -89.70 -0.81 8.15 16 31 H 0.33 12.42 7.44 -89.69 -0.67 11.75 16 32 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.07 2.14 8.08 -2.39 -0.02 2.12 16 34 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.12 1.69 8.14 -2.39 -0.02 1.68 16 36 H 0.10 1.85 7.95 -2.39 -0.02 1.83 16 Total: -1.00 -65.61 315.72 -0.37 -65.98 By element: Atomic # 1 Polarization: 51.50 SS G_CDS: -1.07 Total: 50.43 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 3.46 Total: -24.92 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -3.47 Total: -98.30 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.06 Total: -33.84 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -1.26 Total: -0.88 kcal Total: -65.61 -0.37 -65.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867959727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.109 kcal (2) G-P(sol) polarization free energy of solvation -65.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds