Wall clock time and date at job start Fri Apr 10 2020 17:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30708 * 1 3 3 Si 1.86797 * 120.00287 * 2 1 4 4 H 1.48501 * 109.46995 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47323 * 120.00003 * 3 2 1 6 6 H 1.48502 * 109.47175 * 239.99952 * 3 2 1 7 7 C 1.40131 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99814 * 0.16554 * 7 2 1 9 9 C 1.40738 * 119.99886 * 180.16009 * 7 2 1 10 10 N 1.33718 * 119.95076 * 351.16299 * 9 7 2 11 11 C 1.31265 * 121.63862 * 179.97438 * 10 9 7 12 12 C 1.39090 * 121.36147 * 0.03206 * 11 10 9 13 13 C 1.38329 * 119.73767 * 359.97119 * 12 11 10 14 14 C 1.39778 * 118.47075 * 359.72600 * 13 12 11 15 15 C 1.47674 * 120.65657 * 180.26019 * 14 13 12 16 16 C 1.39846 * 120.24152 * 130.30043 * 15 14 13 17 17 C 1.37482 * 120.21665 * 180.02562 * 16 15 14 18 18 C 1.39692 * 120.33154 * 359.95743 * 17 16 15 19 19 C 1.39218 * 119.18290 * 0.02562 * 18 17 16 20 20 C 1.37254 * 120.96594 * 359.74124 * 19 18 17 21 21 C 1.51174 * 106.29261 * 180.02562 * 19 18 17 22 22 C 1.51383 * 104.02155 * 0.02562 * 21 19 18 23 23 O 1.21280 * 126.42766 * 180.02562 * 22 21 19 24 24 N 1.34339 * 107.15053 * 359.97438 * 22 21 19 25 25 H 0.97001 * 120.00435 * 175.16248 * 1 2 3 26 26 H 1.08000 * 119.32030 * 180.02562 * 11 10 9 27 27 H 1.07995 * 120.12911 * 179.97438 * 12 11 10 28 28 H 1.07997 * 120.76553 * 180.02562 * 13 12 11 29 29 H 1.08000 * 119.89267 * 0.02562 * 16 15 14 30 30 H 1.07992 * 119.83385 * 179.97438 * 17 16 15 31 31 H 1.08000 * 120.10608 * 180.25516 * 20 19 18 32 32 H 1.09005 * 110.51739 * 118.63875 * 21 19 18 33 33 H 1.09005 * 110.51876 * 241.22910 * 21 19 18 34 34 H 0.97000 * 123.82764 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 1.2762 2.7464 0.0006 5 1 3.0949 1.6963 1.2125 6 1 3.0949 1.6963 -1.2125 7 6 2.0077 -1.2136 -0.0005 8 1 1.4677 -2.1488 -0.0037 9 6 3.4151 -1.2136 0.0029 10 7 4.0831 -0.0684 -0.1714 11 6 5.3952 -0.0301 -0.1736 12 6 6.1533 -1.1825 0.0051 13 6 5.5203 -2.3984 0.1903 14 6 4.1228 -2.4278 0.1974 15 6 3.3974 -3.6986 0.3969 16 6 2.3725 -3.7833 1.3445 17 6 1.6979 -4.9667 1.5302 18 6 2.0291 -6.0937 0.7742 19 6 3.0502 -6.0030 -0.1679 20 6 3.7269 -4.8253 -0.3647 21 6 3.1606 -7.3688 -0.8064 22 6 2.0961 -8.1875 -0.1077 23 8 1.8348 -9.3540 -0.3123 24 7 1.4958 -7.3799 0.7824 25 1 -0.4851 -0.8370 -0.0708 26 1 5.8965 0.9156 -0.3172 27 1 7.2319 -1.1281 -0.0006 28 1 6.0926 -3.3034 0.3310 29 1 2.1100 -2.9162 1.9324 30 1 0.9077 -5.0253 2.2640 31 1 4.5139 -4.7694 -1.1021 32 1 2.9555 -7.3086 -1.8753 33 1 4.1491 -7.7937 -0.6313 34 1 0.7729 -7.6610 1.3649 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206227741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:05 Heat of formation + Delta-G solvation = 10.404024 kcal Electronic energy + Delta-G solvation = -20531.208243 eV Core-core repulsion = 17392.779490 eV Total energy + Delta-G solvation = -3138.428754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23430 -39.05203 -37.94372 -35.58636 -33.99929 -32.15836 -31.76882 -30.91515 -28.57159 -27.47610 -25.60372 -23.23610 -21.77098 -21.49377 -20.97517 -20.25253 -18.51654 -17.69719 -16.67003 -15.98003 -15.91982 -15.44264 -15.09112 -14.45821 -13.94276 -13.74566 -13.69638 -13.14441 -13.01172 -12.86129 -12.78733 -12.42483 -12.30314 -12.02214 -11.99207 -10.98073 -10.86302 -10.64905 -10.49221 -10.25592 -10.10917 -9.64831 -9.41078 -8.81152 -8.59039 -8.21250 -7.88855 -7.41323 -7.31656 -4.91254 1.28915 1.65820 2.26842 2.49263 2.66528 3.08227 3.53710 3.60407 3.93711 4.09465 4.20675 4.33311 4.48206 4.55540 5.02404 5.33400 5.33901 5.36098 5.44853 5.53854 5.67939 5.76558 5.79276 6.00136 6.15473 6.24819 6.31899 6.43317 6.54273 6.75888 6.82871 6.88487 6.96190 7.13927 7.28614 7.32147 7.38391 7.55038 7.93725 7.96887 8.13631 8.47672 9.30873 9.84298 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.005191 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.437725 B = 5392.576306 C = 6312.220220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.042 3.958 3 Si 1.154 2.846 4 H -0.332 1.332 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.460 4.460 8 H 0.093 0.907 9 C 0.259 3.741 10 N -0.571 5.571 11 C 0.161 3.839 12 C -0.318 4.318 13 C -0.019 4.019 14 C -0.222 4.222 15 C 0.008 3.992 16 C -0.071 4.071 17 C -0.133 4.133 18 C 0.106 3.894 19 C -0.142 4.142 20 C -0.078 4.078 21 C -0.112 4.112 22 C 0.527 3.473 23 O -0.521 6.521 24 N -0.655 5.655 25 H 0.285 0.715 26 H 0.129 0.871 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.071 -7.407 1.458 9.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.181 4.181 3 Si 0.989 3.011 4 H -0.266 1.266 5 H -0.220 1.220 6 H -0.209 1.209 7 C -0.490 4.490 8 H 0.111 0.889 9 C 0.138 3.862 10 N -0.288 5.288 11 C -0.003 4.003 12 C -0.341 4.341 13 C -0.043 4.043 14 C -0.227 4.227 15 C 0.006 3.994 16 C -0.090 4.090 17 C -0.154 4.154 18 C 0.011 3.989 19 C -0.145 4.145 20 C -0.096 4.096 21 C -0.151 4.151 22 C 0.316 3.684 23 O -0.397 6.397 24 N -0.298 5.298 25 H 0.096 0.904 26 H 0.146 0.854 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.154 0.846 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 4.147 -5.846 1.203 7.268 hybrid contribution 0.221 -2.713 0.353 2.744 sum 4.368 -8.559 1.556 9.734 Atomic orbital electron populations 1.70647 1.08278 1.32940 1.29423 1.27914 0.95281 1.06330 0.88597 0.81813 0.70576 0.69355 0.79361 1.26575 1.22039 1.20858 1.20943 0.90534 0.96659 1.40905 0.88883 1.18551 0.93690 0.85999 0.87977 1.66531 1.09087 1.27988 1.25202 1.22234 0.89895 0.96955 0.91237 1.21084 0.98893 0.93917 1.20159 1.21036 0.93034 0.96683 0.93537 1.19091 0.92557 0.92830 1.18176 1.18556 0.94893 0.92016 0.93938 1.21184 0.94417 0.96291 0.97062 1.20253 1.02606 0.90997 1.01494 1.18110 0.96368 0.85139 0.99318 1.19573 0.99621 0.95130 1.00134 1.20365 0.99653 0.90343 0.99268 1.20997 0.99988 0.92319 1.01801 1.20615 0.82658 0.85838 0.79338 1.90780 1.67751 1.14765 1.66428 1.43562 1.36863 1.10232 1.39132 0.90386 0.85394 0.87656 0.87745 0.84572 0.86219 0.85882 0.86342 0.86363 0.75391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.26 13.65 55.56 0.76 -19.50 16 2 C 0.04 1.05 5.52 -17.32 -0.10 0.96 16 3 Si 1.15 26.88 25.50 -169.99 -4.34 22.55 16 4 H -0.33 -7.74 7.11 56.52 0.40 -7.33 16 5 H -0.29 -6.81 7.08 56.52 0.40 -6.41 16 6 H -0.28 -6.54 6.77 56.52 0.38 -6.15 16 7 C -0.46 -11.39 8.18 -37.93 -0.31 -11.70 16 8 H 0.09 2.29 5.85 -52.49 -0.31 1.98 16 9 C 0.26 6.18 6.39 -84.71 -0.54 5.64 16 10 N -0.57 -13.47 4.58 -10.90 -0.05 -13.52 16 11 C 0.16 3.26 11.17 -17.48 -0.20 3.06 16 12 C -0.32 -5.90 10.10 -39.23 -0.40 -6.29 16 13 C -0.02 -0.36 9.67 -38.97 -0.38 -0.73 16 14 C -0.22 -4.66 5.54 -104.07 -0.58 -5.23 16 15 C 0.01 0.14 4.98 -104.81 -0.52 -0.38 16 16 C -0.07 -1.26 7.63 -39.26 -0.30 -1.56 16 17 C -0.13 -2.00 10.06 -39.31 -0.40 -2.40 16 18 C 0.11 1.54 7.11 -83.59 -0.59 0.95 16 19 C -0.14 -2.06 6.34 -104.38 -0.66 -2.72 16 20 C -0.08 -1.24 9.54 -39.31 -0.38 -1.62 16 21 C -0.11 -1.34 6.88 -28.47 -0.20 -1.54 16 22 C 0.53 7.33 8.71 -10.85 -0.09 7.24 16 23 O -0.52 -8.67 18.03 5.56 0.10 -8.57 16 24 N -0.66 -8.41 5.86 -9.62 -0.06 -8.47 16 25 H 0.28 6.97 8.72 -40.82 -0.36 6.61 16 26 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 27 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.14 2.57 7.30 -52.49 -0.38 2.18 16 30 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 32 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.41 4.33 8.96 -40.82 -0.37 3.96 16 LS Contribution 293.80 15.07 4.43 4.43 Total: -1.00 -28.28 293.80 -7.97 -36.25 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.19 Total: 3.17 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -5.63 Total: -16.34 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.65 Total: -41.49 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.10 Total: -8.57 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -4.34 Total: 22.55 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.28 -7.97 -36.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206227741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.656 kcal (2) G-P(sol) polarization free energy of solvation -28.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds