Wall clock time and date at job start Fri Apr 10 2020 17:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30708 * 1 3 3 Si 1.86797 * 120.00287 * 2 1 4 4 H 1.48501 * 109.46995 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47323 * 120.00003 * 3 2 1 6 6 H 1.48502 * 109.47175 * 239.99952 * 3 2 1 7 7 C 1.40131 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99814 * 0.16554 * 7 2 1 9 9 C 1.40738 * 119.99886 * 180.16009 * 7 2 1 10 10 N 1.33718 * 119.95076 * 351.16299 * 9 7 2 11 11 C 1.31265 * 121.63862 * 179.97438 * 10 9 7 12 12 C 1.39090 * 121.36147 * 0.03206 * 11 10 9 13 13 C 1.38329 * 119.73767 * 359.97119 * 12 11 10 14 14 C 1.39778 * 118.47075 * 359.72600 * 13 12 11 15 15 C 1.47674 * 120.65657 * 180.26019 * 14 13 12 16 16 C 1.39846 * 120.24152 * 130.30043 * 15 14 13 17 17 C 1.37482 * 120.21665 * 180.02562 * 16 15 14 18 18 C 1.39692 * 120.33154 * 359.95743 * 17 16 15 19 19 C 1.39218 * 119.18290 * 0.02562 * 18 17 16 20 20 C 1.37254 * 120.96594 * 359.74124 * 19 18 17 21 21 C 1.51174 * 106.29261 * 180.02562 * 19 18 17 22 22 C 1.51383 * 104.02155 * 0.02562 * 21 19 18 23 23 O 1.21280 * 126.42766 * 180.02562 * 22 21 19 24 24 N 1.34339 * 107.15053 * 359.97438 * 22 21 19 25 25 H 0.97001 * 120.00435 * 175.16248 * 1 2 3 26 26 H 1.08000 * 119.32030 * 180.02562 * 11 10 9 27 27 H 1.07995 * 120.12911 * 179.97438 * 12 11 10 28 28 H 1.07997 * 120.76553 * 180.02562 * 13 12 11 29 29 H 1.08000 * 119.89267 * 0.02562 * 16 15 14 30 30 H 1.07992 * 119.83385 * 179.97438 * 17 16 15 31 31 H 1.08000 * 120.10608 * 180.25516 * 20 19 18 32 32 H 1.09005 * 110.51739 * 118.63875 * 21 19 18 33 33 H 1.09005 * 110.51876 * 241.22910 * 21 19 18 34 34 H 0.97000 * 123.82764 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 1.2762 2.7464 0.0006 5 1 3.0949 1.6963 1.2125 6 1 3.0949 1.6963 -1.2125 7 6 2.0077 -1.2136 -0.0005 8 1 1.4677 -2.1488 -0.0037 9 6 3.4151 -1.2136 0.0029 10 7 4.0831 -0.0684 -0.1714 11 6 5.3952 -0.0301 -0.1736 12 6 6.1533 -1.1825 0.0051 13 6 5.5203 -2.3984 0.1903 14 6 4.1228 -2.4278 0.1974 15 6 3.3974 -3.6986 0.3969 16 6 2.3725 -3.7833 1.3445 17 6 1.6979 -4.9667 1.5302 18 6 2.0291 -6.0937 0.7742 19 6 3.0502 -6.0030 -0.1679 20 6 3.7269 -4.8253 -0.3647 21 6 3.1606 -7.3688 -0.8064 22 6 2.0961 -8.1875 -0.1077 23 8 1.8348 -9.3540 -0.3123 24 7 1.4958 -7.3799 0.7824 25 1 -0.4851 -0.8370 -0.0708 26 1 5.8965 0.9156 -0.3172 27 1 7.2319 -1.1281 -0.0006 28 1 6.0926 -3.3034 0.3310 29 1 2.1100 -2.9162 1.9324 30 1 0.9077 -5.0253 2.2640 31 1 4.5139 -4.7694 -1.1021 32 1 2.9555 -7.3086 -1.8753 33 1 4.1491 -7.7937 -0.6313 34 1 0.7729 -7.6610 1.3649 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206227741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:04 Heat of formation + Delta-G solvation = -5.907438 kcal Electronic energy + Delta-G solvation = -20531.915561 eV Core-core repulsion = 17392.779490 eV Total energy + Delta-G solvation = -3139.136072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.38216 -40.59592 -39.24530 -36.84878 -35.76831 -33.35709 -33.21652 -32.53293 -29.86362 -28.73063 -27.26534 -24.64278 -23.24134 -22.87184 -22.11357 -21.66389 -20.30535 -18.85440 -17.93746 -17.38241 -17.07172 -16.94056 -16.65696 -15.66326 -15.60297 -15.13774 -14.96859 -14.58463 -14.47560 -14.24280 -14.11726 -13.90074 -13.64663 -13.50327 -13.38402 -12.60281 -12.42323 -12.02250 -11.87317 -11.84117 -11.36025 -11.30824 -11.25946 -10.37992 -9.86569 -9.75218 -9.65401 -9.18251 -8.70722 -6.68997 -0.00225 0.42595 0.76899 0.88466 1.44220 1.64896 1.76856 2.00011 2.09856 2.48375 2.70478 2.83400 3.11901 3.42057 3.65973 3.87752 3.98339 4.19830 4.29682 4.38121 4.42337 4.48820 4.51775 4.69038 4.79051 4.84174 5.04177 5.13052 5.14651 5.39664 5.46182 5.48307 5.57658 5.69601 5.76137 5.84115 5.94900 6.07549 6.13586 6.44470 6.73170 6.90447 7.63541 8.00234 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.005191 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.437725 B = 5392.576306 C = 6312.220220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.016 3.984 3 Si 1.186 2.814 4 H -0.338 1.338 5 H -0.296 1.296 6 H -0.282 1.282 7 C -0.492 4.492 8 H 0.082 0.918 9 C 0.243 3.757 10 N -0.599 5.599 11 C 0.134 3.866 12 C -0.291 4.291 13 C -0.025 4.025 14 C -0.222 4.222 15 C -0.022 4.022 16 C -0.085 4.085 17 C -0.131 4.131 18 C 0.112 3.888 19 C -0.139 4.139 20 C -0.072 4.072 21 C -0.104 4.104 22 C 0.527 3.473 23 O -0.549 6.549 24 N -0.647 5.647 25 H 0.280 0.720 26 H 0.158 0.842 27 H 0.145 0.855 28 H 0.140 0.860 29 H 0.113 0.887 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.759 -9.249 1.108 12.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.202 4.202 3 Si 1.021 2.979 4 H -0.272 1.272 5 H -0.225 1.225 6 H -0.210 1.210 7 C -0.523 4.523 8 H 0.100 0.900 9 C 0.120 3.880 10 N -0.317 5.317 11 C -0.027 4.027 12 C -0.313 4.313 13 C -0.049 4.049 14 C -0.226 4.226 15 C -0.024 4.024 16 C -0.104 4.104 17 C -0.152 4.152 18 C 0.016 3.984 19 C -0.141 4.141 20 C -0.090 4.090 21 C -0.142 4.142 22 C 0.317 3.683 23 O -0.427 6.427 24 N -0.290 5.290 25 H 0.091 0.909 26 H 0.175 0.825 27 H 0.163 0.837 28 H 0.158 0.842 29 H 0.131 0.869 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 6.867 -7.682 0.863 10.340 hybrid contribution -0.352 -2.328 0.493 2.405 sum 6.515 -10.010 1.355 12.020 Atomic orbital electron populations 1.70669 1.08614 1.32617 1.33132 1.28423 0.95533 1.07823 0.88406 0.81332 0.69694 0.68006 0.78849 1.27241 1.22482 1.21040 1.20812 0.91356 0.95998 1.44156 0.90027 1.18778 0.93695 0.87451 0.88121 1.66395 1.10913 1.28363 1.26073 1.22856 0.89094 0.99241 0.91503 1.21606 1.00853 0.92970 1.15910 1.21485 0.92342 0.98364 0.92694 1.19416 0.93837 0.92859 1.16480 1.18582 0.95964 0.92177 0.95635 1.21044 0.95186 0.96544 0.97605 1.20341 1.02595 0.90372 1.01894 1.18162 0.96137 0.85373 0.98746 1.19796 0.98771 0.95816 0.99761 1.20421 0.99972 0.89768 0.98870 1.21089 1.00716 0.90047 1.02378 1.20890 0.82782 0.85494 0.79165 1.90779 1.68670 1.16005 1.67278 1.43539 1.36925 1.09419 1.39094 0.90876 0.82455 0.83702 0.84241 0.86939 0.84266 0.84123 0.84345 0.83544 0.74195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.60 13.65 21.86 0.30 -44.30 16 2 C 0.02 0.82 5.52 85.32 0.47 1.29 16 3 Si 1.19 56.43 25.50 68.60 1.75 58.18 16 4 H -0.34 -16.05 7.11 99.48 0.71 -15.34 16 5 H -0.30 -14.00 7.08 99.48 0.70 -13.29 16 6 H -0.28 -13.24 6.77 99.48 0.67 -12.57 16 7 C -0.49 -25.41 8.18 23.34 0.19 -25.22 16 8 H 0.08 4.26 5.85 -2.91 -0.02 4.24 16 9 C 0.24 11.68 6.39 40.37 0.26 11.94 16 10 N -0.60 -28.04 4.58 -188.40 -0.86 -28.90 16 11 C 0.13 5.11 11.17 84.98 0.95 6.06 16 12 C -0.29 -9.63 10.10 22.50 0.23 -9.41 16 13 C -0.02 -0.85 9.67 22.66 0.22 -0.63 16 14 C -0.22 -9.06 5.54 -19.51 -0.11 -9.17 16 15 C -0.02 -0.80 4.98 -19.99 -0.10 -0.90 16 16 C -0.08 -3.04 7.63 22.48 0.17 -2.87 16 17 C -0.13 -3.85 10.06 22.44 0.23 -3.63 16 18 C 0.11 3.00 7.11 38.55 0.27 3.28 16 19 C -0.14 -3.59 6.34 -19.71 -0.12 -3.72 16 20 C -0.07 -2.11 9.54 22.45 0.21 -1.90 16 21 C -0.10 -2.07 6.88 29.47 0.20 -1.87 16 22 C 0.53 13.10 8.71 87.94 0.77 13.87 16 23 O -0.55 -16.99 18.03 -3.03 -0.05 -17.04 16 24 N -0.65 -14.97 5.86 -303.00 -1.78 -16.74 16 25 H 0.28 14.64 8.72 -92.71 -0.81 13.84 16 26 H 0.16 4.90 8.06 -2.91 -0.02 4.88 16 27 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 28 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 29 H 0.11 4.51 7.30 -2.91 -0.02 4.49 16 30 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 32 H 0.14 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.15 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.42 7.94 8.96 -92.71 -0.83 7.11 16 Total: -1.00 -62.89 293.80 3.44 -59.45 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.25 Total: 12.23 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 3.84 Total: -22.88 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -2.34 Total: -89.94 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.05 Total: -17.04 kcal Atomic # 14 Polarization: 56.43 SS G_CDS: 1.75 Total: 58.18 kcal Total: -62.89 3.44 -59.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206227741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.542 kcal (2) G-P(sol) polarization free energy of solvation -62.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds