Wall clock time and date at job start Fri Apr 10 2020 17:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39650 * 120.15814 * 356.37008 * 3 2 1 5 5 C 1.38530 * 119.82200 * 179.97438 * 4 3 2 6 6 N 1.39794 * 119.93329 * 179.97438 * 5 4 3 7 7 C 1.38637 * 119.99503 * 134.64522 * 6 5 4 8 8 C 1.38830 * 120.29776 * 352.53799 * 7 6 5 9 9 C 1.38107 * 120.01916 * 179.97438 * 8 7 6 10 10 C 1.38941 * 120.63414 * 0.02562 * 9 8 7 11 11 C 1.36422 * 120.61046 * 359.97438 * 10 9 8 12 12 C 1.40748 * 119.95551 * 359.97438 * 11 10 9 13 13 C 1.41003 * 120.31237 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99812 * 159.11965 * 13 12 11 15 15 C 1.39902 * 119.99760 * 339.11681 * 13 12 11 16 16 N 1.30895 * 120.00320 * 337.13520 * 15 13 12 17 17 Si 1.86801 * 119.99824 * 157.13415 * 15 13 12 18 18 H 1.48493 * 109.47037 * 59.99669 * 17 15 13 19 19 H 1.48501 * 109.47025 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46929 * 300.00139 * 17 15 13 21 21 C 1.39183 * 120.12926 * 0.25955 * 5 4 3 22 22 C 1.38009 * 120.31402 * 359.48338 * 21 5 4 23 23 C 1.38663 * 120.18005 * 0.51253 * 22 21 5 24 24 O 1.35772 * 120.07155 * 179.72303 * 23 22 21 25 25 H 1.08002 * 120.09204 * 359.97438 * 4 3 2 26 26 H 0.96993 * 120.00725 * 314.64218 * 6 5 4 27 27 H 1.07998 * 119.99270 * 0.25626 * 8 7 6 28 28 H 1.07994 * 119.68352 * 180.02562 * 9 8 7 29 29 H 1.07998 * 119.69509 * 179.97438 * 10 9 8 30 30 H 1.07999 * 120.02137 * 180.02562 * 11 10 9 31 31 H 0.96994 * 120.00086 * 180.02562 * 16 15 13 32 32 H 1.08002 * 119.83790 * 179.71981 * 21 5 4 33 33 H 1.07997 * 119.91274 * 180.25955 * 22 21 5 34 34 H 0.96700 * 113.99980 * 270.02365 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2701 -1.2041 0.0764 5 6 4.6554 -1.1954 0.0754 6 7 5.3606 -2.4000 0.1524 7 6 6.4384 -2.6271 -0.6895 8 6 6.7284 -1.7345 -1.7125 9 6 7.8038 -1.9661 -2.5474 10 6 8.6044 -3.0887 -2.3759 11 6 8.3429 -3.9827 -1.3791 12 6 7.2539 -3.7708 -0.5129 13 6 6.9772 -4.6896 0.5202 14 1 6.3857 -4.3840 1.3705 15 6 7.4687 -5.9972 0.4437 16 7 7.7809 -6.5121 -0.7186 17 14 7.6797 -7.0083 2.0002 18 1 6.3654 -7.1580 2.6750 19 1 8.2129 -8.3495 1.6507 20 1 8.6289 -6.3209 2.9121 21 6 5.3464 0.0106 0.0038 22 6 4.6581 1.2041 -0.0772 23 6 3.2715 1.2105 -0.0772 24 8 2.5966 2.3862 -0.1514 25 1 2.7346 -2.1401 0.1362 26 1 5.0959 -3.0768 0.7947 27 1 6.1155 -0.8564 -1.8526 28 1 8.0247 -1.2680 -3.3412 29 1 9.4413 -3.2552 -3.0379 30 1 8.9716 -4.8518 -1.2542 31 1 8.1214 -7.4188 -0.7716 32 1 6.4264 0.0122 0.0079 33 1 5.2009 2.1359 -0.1367 34 1 2.4016 2.7828 0.7088 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210532830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:13 Heat of formation + Delta-G solvation = 23.905340 kcal Electronic energy + Delta-G solvation = -20095.574235 eV Core-core repulsion = 16957.730942 eV Total energy + Delta-G solvation = -3137.843293 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22281 -39.77671 -37.96368 -37.57811 -35.53948 -35.30982 -32.44454 -31.61022 -30.56792 -28.59883 -26.93131 -24.98700 -23.74245 -22.53906 -22.02066 -19.91966 -19.27265 -18.87936 -18.13199 -17.07788 -16.92918 -16.53460 -16.46078 -15.84229 -15.08266 -14.85735 -14.58929 -14.46587 -14.37851 -14.22805 -14.09882 -13.78155 -13.39420 -13.24792 -13.03387 -12.91627 -12.79612 -12.57176 -12.14450 -11.59421 -11.47630 -11.35231 -11.17647 -10.92404 -9.99065 -9.48560 -9.31104 -8.64689 -8.02828 -6.07631 -0.28287 0.25604 1.05998 1.29708 1.42350 1.50992 1.56379 1.59068 1.92723 2.23289 2.59113 2.74174 2.84288 2.97281 3.23282 3.83427 3.94033 4.20940 4.40745 4.49616 4.55906 4.67402 4.79582 4.90685 5.02710 5.13506 5.28846 5.33708 5.36796 5.46501 5.54217 5.70737 5.90311 5.96708 6.30855 6.35067 6.38846 6.58480 6.81779 6.85042 6.95227 7.14843 7.21924 8.37732 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.004581 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.577894 B = 6110.960187 C = 7042.347034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.285 3.715 3 C -0.041 4.041 4 C -0.101 4.101 5 C 0.167 3.833 6 N -0.676 5.676 7 C 0.073 3.927 8 C -0.156 4.156 9 C -0.206 4.206 10 C -0.142 4.142 11 C -0.175 4.175 12 C 0.050 3.950 13 C -0.492 4.492 14 H 0.081 0.919 15 C 0.041 3.959 16 N -0.822 5.822 17 Si 0.971 3.029 18 H -0.259 1.259 19 H -0.275 1.275 20 H -0.264 1.264 21 C -0.106 4.106 22 C -0.106 4.106 23 C 0.130 3.870 24 O -0.500 6.500 25 H 0.137 0.863 26 H 0.407 0.593 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.285 0.715 32 H 0.135 0.865 33 H 0.167 0.833 34 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.853 11.099 4.406 12.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.030 4.030 3 C -0.046 4.046 4 C -0.125 4.125 5 C 0.069 3.931 6 N -0.300 5.300 7 C -0.024 4.024 8 C -0.177 4.177 9 C -0.226 4.226 10 C -0.162 4.162 11 C -0.195 4.195 12 C 0.046 3.954 13 C -0.522 4.522 14 H 0.099 0.901 15 C -0.174 4.174 16 N -0.448 5.448 17 Si 0.793 3.207 18 H -0.183 1.183 19 H -0.200 1.200 20 H -0.188 1.188 21 C -0.128 4.128 22 C -0.125 4.125 23 C 0.081 3.919 24 O -0.314 6.314 25 H 0.155 0.845 26 H 0.244 0.756 27 H 0.140 0.860 28 H 0.134 0.866 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.153 0.847 33 H 0.185 0.815 34 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -4.488 10.845 3.629 12.285 hybrid contribution 0.538 -1.214 1.072 1.707 sum -3.950 9.631 4.701 11.422 Atomic orbital electron populations 1.81214 1.12982 1.08742 1.10586 1.25626 0.92539 0.92348 0.92454 1.16111 0.83610 0.94600 1.10245 1.20898 0.92568 0.97123 1.01905 1.17676 0.90121 0.86724 0.98594 1.41548 1.31678 1.16630 1.40188 1.17856 0.91243 0.98743 0.94604 1.20607 1.00111 1.00254 0.96769 1.20523 0.99424 0.99684 1.02941 1.20586 1.00449 0.96001 0.99134 1.20835 0.99123 1.00377 0.99183 1.17536 0.91232 0.92264 0.94392 1.19413 1.31696 0.95360 1.05723 0.90088 1.26583 0.92366 0.99011 0.99479 1.69931 1.32108 1.15846 1.26898 0.85417 0.79764 0.76975 0.78575 1.18333 1.20025 1.18818 1.21442 1.01218 0.90643 0.99486 1.21323 0.92054 0.99147 0.99932 1.18210 0.89894 0.83748 1.00014 1.84762 1.76389 1.33951 1.36265 0.84497 0.75568 0.86036 0.86606 0.88075 0.88344 0.90423 0.84692 0.81510 0.72778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.86 18.54 19.00 0.35 -13.51 16 2 C 0.28 7.52 14.86 88.33 1.31 8.83 16 3 C -0.04 -0.96 5.75 -21.22 -0.12 -1.08 16 4 C -0.10 -2.58 9.67 22.68 0.22 -2.36 16 5 C 0.17 4.81 5.72 38.17 0.22 5.03 16 6 N -0.68 -24.14 5.35 -179.39 -0.96 -25.10 16 7 C 0.07 3.13 6.45 39.03 0.25 3.38 16 8 C -0.16 -6.18 8.17 22.38 0.18 -6.00 16 9 C -0.21 -8.34 10.03 22.41 0.22 -8.12 16 10 C -0.14 -6.35 9.96 22.01 0.22 -6.13 16 11 C -0.17 -8.77 8.68 22.46 0.19 -8.58 16 12 C 0.05 2.47 5.61 -21.17 -0.12 2.35 16 13 C -0.49 -24.02 8.52 23.35 0.20 -23.82 16 14 H 0.08 3.67 6.68 -2.91 -0.02 3.65 16 15 C 0.04 1.95 5.05 85.24 0.43 2.38 16 16 N -0.82 -41.38 11.03 21.82 0.24 -41.14 16 17 Si 0.97 36.30 29.62 68.60 2.03 38.33 16 18 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 19 H -0.28 -10.03 7.11 99.48 0.71 -9.33 16 20 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 21 C -0.11 -2.61 7.42 22.44 0.17 -2.44 16 22 C -0.11 -1.99 9.97 22.32 0.22 -1.77 16 23 C 0.13 2.60 6.71 22.84 0.15 2.76 16 24 O -0.50 -8.55 12.93 -91.00 -1.18 -9.73 16 25 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 26 H 0.41 14.40 7.06 -92.71 -0.65 13.75 16 27 H 0.12 4.18 5.56 -2.91 -0.02 4.16 16 28 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 29 H 0.10 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.10 5.24 6.08 -2.91 -0.02 5.22 16 31 H 0.29 13.17 8.30 -92.71 -0.77 12.41 16 32 H 0.14 3.53 7.00 -2.91 -0.02 3.51 16 33 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.41 3.06 9.06 -74.06 -0.67 2.39 16 Total: -1.00 -59.14 303.35 4.10 -55.04 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: -0.14 Total: 31.69 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 3.76 Total: -35.57 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -0.37 Total: -79.75 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.18 Total: -9.73 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -59.14 4.10 -55.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210532830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.942 kcal (2) G-P(sol) polarization free energy of solvation -59.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds