Wall clock time and date at job start Fri Apr 10 2020 17:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39689 * 120.15472 * 300.75878 * 3 2 1 5 5 C 1.38461 * 119.81760 * 180.24703 * 4 3 2 6 6 N 1.39976 * 119.92818 * 179.73293 * 5 4 3 7 7 C 1.39701 * 119.99654 * 333.70840 * 6 5 4 8 8 C 1.39356 * 119.96036 * 328.14894 * 7 6 5 9 9 C 1.38461 * 120.42374 * 180.02562 * 8 7 6 10 10 C 1.37697 * 120.33053 * 359.97438 * 9 8 7 11 11 C 1.40749 * 119.89401 * 0.02562 * 10 9 8 12 12 C 1.41418 * 120.20645 * 179.97438 * 11 10 9 13 13 H 1.07992 * 119.99679 * 335.94456 * 12 11 10 14 14 C 1.39929 * 119.99749 * 155.94572 * 12 11 10 15 15 N 1.30826 * 120.00315 * 344.02921 * 14 12 11 16 16 Si 1.86803 * 119.99629 * 164.03195 * 14 12 11 17 17 H 1.48503 * 109.47118 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47010 * 119.99604 * 16 14 12 19 19 H 1.48494 * 109.47014 * 239.99905 * 16 14 12 20 20 C 1.38306 * 119.94995 * 148.14605 * 7 6 5 21 21 C 1.39108 * 120.14297 * 359.45902 * 5 4 3 22 22 C 1.38052 * 120.31848 * 0.27104 * 21 5 4 23 23 C 1.38628 * 120.17407 * 0.02562 * 22 21 5 24 24 O 1.35796 * 120.07239 * 180.02562 * 23 22 21 25 25 H 1.07994 * 120.09178 * 359.97438 * 4 3 2 26 26 H 0.97000 * 119.99933 * 153.71529 * 6 5 4 27 27 H 1.08002 * 119.78694 * 0.02562 * 8 7 6 28 28 H 1.08004 * 119.83716 * 179.97438 * 9 8 7 29 29 H 1.08002 * 120.05119 * 180.02562 * 10 9 8 30 30 H 0.96993 * 119.99951 * 179.97438 * 15 14 12 31 31 H 1.08002 * 120.16027 * 0.27628 * 20 7 6 32 32 H 1.08002 * 119.84591 * 180.29644 * 21 5 4 33 33 H 1.08000 * 119.91678 * 179.97438 * 22 21 5 34 34 H 0.96696 * 113.99684 * 89.99906 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2700 -0.6168 1.0379 5 6 4.6546 -0.6075 1.0336 6 7 5.3604 -1.2207 2.0754 7 6 4.7735 -1.3472 3.3368 8 6 3.8768 -0.3804 3.7875 9 6 3.2900 -0.4960 5.0362 10 6 3.5860 -1.5689 5.8470 11 6 4.4898 -2.5534 5.4055 12 6 4.7989 -3.6578 6.2329 13 1 4.6797 -3.5805 7.3035 14 6 5.2594 -4.8507 5.6645 15 7 5.1129 -5.0635 4.3820 16 14 6.0832 -6.1393 6.7370 17 1 6.1265 -5.6600 8.1418 18 1 5.3116 -7.4063 6.6694 19 1 7.4667 -6.3758 6.2523 20 6 5.0833 -2.4321 4.1368 21 6 5.3458 0.0048 -0.0068 22 6 4.6579 0.6118 -1.0384 23 6 3.2717 0.6157 -1.0441 24 8 2.5971 1.2130 -2.0601 25 1 2.7343 -1.0962 1.8438 26 1 6.2569 -1.5575 1.9215 27 1 3.6381 0.4646 3.1586 28 1 2.5966 0.2591 5.3761 29 1 3.1253 -1.6548 6.8200 30 1 5.4324 -5.8901 3.9880 31 1 5.7815 -3.1799 3.7905 32 1 6.4259 0.0050 -0.0078 33 1 5.2011 1.0856 -1.8426 34 1 2.4015 0.6243 -2.8019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210533788.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:15 Heat of formation + Delta-G solvation = 34.631935 kcal Electronic energy + Delta-G solvation = -20027.859753 eV Core-core repulsion = 16890.481601 eV Total energy + Delta-G solvation = -3137.378153 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08609 -38.29765 -36.78552 -36.32491 -34.49081 -33.38171 -31.35793 -29.64986 -29.43974 -27.04744 -25.42270 -23.90798 -22.40561 -21.18913 -20.32097 -19.00289 -18.17958 -17.42879 -16.48943 -15.75509 -15.44212 -15.31148 -14.79429 -14.66150 -13.92581 -13.67847 -13.42948 -13.14202 -12.98025 -12.91518 -12.58034 -12.36718 -12.14890 -11.94280 -11.76578 -11.34978 -11.14169 -10.78669 -10.57937 -10.53181 -10.17489 -9.86323 -9.65154 -9.25552 -8.95292 -8.10977 -7.51726 -6.87381 -6.54275 -4.48802 0.80692 1.35383 2.66838 2.79837 2.85166 3.01951 3.06687 3.10223 3.19215 3.75256 3.84306 3.85912 4.06322 4.21475 4.53416 4.91467 5.17731 5.45353 5.52367 5.58730 5.86241 6.00505 6.14456 6.30556 6.32216 6.39576 6.57021 6.71550 6.95099 6.95545 7.16215 7.18455 7.52111 7.59913 7.63514 7.71504 7.84880 7.95758 8.24232 8.25372 8.56899 8.79869 8.84970 10.08696 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024217 B = 0.004113 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.958537 B = 6805.785855 C = 7139.049932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.267 3.733 3 C -0.021 4.021 4 C -0.104 4.104 5 C 0.207 3.793 6 N -0.678 5.678 7 C 0.165 3.835 8 C -0.272 4.272 9 C -0.074 4.074 10 C -0.237 4.237 11 C 0.127 3.873 12 C -0.459 4.459 13 H 0.080 0.920 14 C 0.076 3.924 15 N -0.792 5.792 16 Si 0.908 3.092 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.272 1.272 20 C -0.194 4.194 21 C -0.145 4.145 22 C -0.106 4.106 23 C 0.090 3.910 24 O -0.494 6.494 25 H 0.147 0.853 26 H 0.404 0.596 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.280 0.720 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.744 4.984 -9.580 11.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.049 4.049 3 C -0.026 4.026 4 C -0.129 4.129 5 C 0.104 3.896 6 N -0.299 5.299 7 C 0.072 3.928 8 C -0.293 4.293 9 C -0.093 4.093 10 C -0.257 4.257 11 C 0.124 3.876 12 C -0.488 4.488 13 H 0.098 0.902 14 C -0.142 4.142 15 N -0.417 5.417 16 Si 0.732 3.268 17 H -0.184 1.184 18 H -0.200 1.200 19 H -0.197 1.197 20 C -0.216 4.216 21 C -0.168 4.168 22 C -0.125 4.125 23 C 0.041 3.959 24 O -0.303 6.303 25 H 0.165 0.835 26 H 0.240 0.760 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.964 5.295 -9.284 10.867 hybrid contribution 1.079 -1.214 0.068 1.625 sum 3.043 4.081 -9.216 10.528 Atomic orbital electron populations 1.81178 1.12046 1.08775 1.07861 1.25488 0.92504 0.93356 0.93510 1.16176 0.84488 1.03601 0.98323 1.21063 0.93034 1.00301 0.98489 1.17623 0.90701 0.92591 0.88649 1.42227 1.17806 1.62609 1.07271 1.17588 0.96694 0.94766 0.83793 1.20181 1.09327 1.00977 0.98816 1.20365 0.98182 0.96900 0.93810 1.21003 1.04826 0.99203 1.00697 1.17399 0.87823 0.91230 0.91195 1.19640 1.38338 0.95779 0.95071 0.90236 1.25915 0.93625 0.99431 0.95240 1.69819 1.34572 1.25043 1.12308 0.86263 0.79397 0.79887 0.81234 1.18353 1.19954 1.19712 1.21097 1.06477 0.96627 0.97412 1.20817 1.00157 1.00302 0.95534 1.20966 0.92382 0.99771 0.99386 1.18087 0.89695 0.98430 0.89668 1.84830 1.76710 1.39219 1.29569 0.83531 0.75986 0.88878 0.89062 0.88890 0.90929 0.85672 0.85058 0.84702 0.75896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.40 18.54 41.84 0.78 -6.63 16 2 C 0.27 4.24 14.86 -22.47 -0.33 3.91 16 3 C -0.02 -0.30 5.75 -106.72 -0.61 -0.92 16 4 C -0.10 -1.64 7.59 -38.96 -0.30 -1.94 16 5 C 0.21 3.06 6.02 -83.73 -0.50 2.56 16 6 N -0.68 -11.31 5.47 -8.46 -0.05 -11.35 16 7 C 0.17 3.45 5.89 -83.83 -0.49 2.95 16 8 C -0.27 -5.66 7.79 -39.08 -0.30 -5.96 16 9 C -0.07 -1.59 10.01 -39.70 -0.40 -1.98 16 10 C -0.24 -5.57 9.79 -38.83 -0.38 -5.95 16 11 C 0.13 3.19 5.58 -106.85 -0.60 2.59 16 12 C -0.46 -11.58 9.06 -37.74 -0.34 -11.93 16 13 H 0.08 1.95 7.89 -52.49 -0.41 1.53 16 14 C 0.08 1.80 5.18 -17.35 -0.09 1.71 16 15 N -0.79 -19.34 10.82 55.55 0.60 -18.74 16 16 Si 0.91 17.81 29.59 -169.99 -5.03 12.78 16 17 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 20 C -0.19 -4.61 8.60 -38.67 -0.33 -4.94 16 21 C -0.14 -1.67 9.92 -39.33 -0.39 -2.06 16 22 C -0.11 -1.12 9.97 -39.51 -0.39 -1.51 16 23 C 0.09 1.09 6.71 -38.73 -0.26 0.83 16 24 O -0.49 -5.40 12.93 -19.10 -0.25 -5.65 16 25 H 0.15 2.66 6.37 -52.49 -0.33 2.32 16 26 H 0.40 5.88 8.89 -40.82 -0.36 5.52 16 27 H 0.09 1.81 6.60 -52.49 -0.35 1.47 16 28 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 29 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 31 H 0.13 3.06 6.06 -52.49 -0.32 2.74 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.39 2.44 9.06 45.56 0.41 2.86 16 LS Contribution 306.80 15.07 4.62 4.62 Total: -1.00 -28.09 306.80 -7.24 -35.33 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -2.19 Total: 12.26 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -5.73 Total: -22.63 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 1.33 Total: -36.72 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.25 Total: -5.65 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.09 -7.24 -35.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210533788.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.963 kcal (2) G-P(sol) polarization free energy of solvation -28.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds