Wall clock time and date at job start Fri Apr 10 2020 17:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39689 * 120.15472 * 300.75878 * 3 2 1 5 5 C 1.38461 * 119.81760 * 180.24703 * 4 3 2 6 6 N 1.39976 * 119.92818 * 179.73293 * 5 4 3 7 7 C 1.39701 * 119.99654 * 333.70840 * 6 5 4 8 8 C 1.39356 * 119.96036 * 328.14894 * 7 6 5 9 9 C 1.38461 * 120.42374 * 180.02562 * 8 7 6 10 10 C 1.37697 * 120.33053 * 359.97438 * 9 8 7 11 11 C 1.40749 * 119.89401 * 0.02562 * 10 9 8 12 12 C 1.41418 * 120.20645 * 179.97438 * 11 10 9 13 13 H 1.07992 * 119.99679 * 335.94456 * 12 11 10 14 14 C 1.39929 * 119.99749 * 155.94572 * 12 11 10 15 15 N 1.30826 * 120.00315 * 344.02921 * 14 12 11 16 16 Si 1.86803 * 119.99629 * 164.03195 * 14 12 11 17 17 H 1.48503 * 109.47118 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47010 * 119.99604 * 16 14 12 19 19 H 1.48494 * 109.47014 * 239.99905 * 16 14 12 20 20 C 1.38306 * 119.94995 * 148.14605 * 7 6 5 21 21 C 1.39108 * 120.14297 * 359.45902 * 5 4 3 22 22 C 1.38052 * 120.31848 * 0.27104 * 21 5 4 23 23 C 1.38628 * 120.17407 * 0.02562 * 22 21 5 24 24 O 1.35796 * 120.07239 * 180.02562 * 23 22 21 25 25 H 1.07994 * 120.09178 * 359.97438 * 4 3 2 26 26 H 0.97000 * 119.99933 * 153.71529 * 6 5 4 27 27 H 1.08002 * 119.78694 * 0.02562 * 8 7 6 28 28 H 1.08004 * 119.83716 * 179.97438 * 9 8 7 29 29 H 1.08002 * 120.05119 * 180.02562 * 10 9 8 30 30 H 0.96993 * 119.99951 * 179.97438 * 15 14 12 31 31 H 1.08002 * 120.16027 * 0.27628 * 20 7 6 32 32 H 1.08002 * 119.84591 * 180.29644 * 21 5 4 33 33 H 1.08000 * 119.91678 * 179.97438 * 22 21 5 34 34 H 0.96696 * 113.99684 * 89.99906 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2700 -0.6168 1.0379 5 6 4.6546 -0.6075 1.0336 6 7 5.3604 -1.2207 2.0754 7 6 4.7735 -1.3472 3.3368 8 6 3.8768 -0.3804 3.7875 9 6 3.2900 -0.4960 5.0362 10 6 3.5860 -1.5689 5.8470 11 6 4.4898 -2.5534 5.4055 12 6 4.7989 -3.6578 6.2329 13 1 4.6797 -3.5805 7.3035 14 6 5.2594 -4.8507 5.6645 15 7 5.1129 -5.0635 4.3820 16 14 6.0832 -6.1393 6.7370 17 1 6.1265 -5.6600 8.1418 18 1 5.3116 -7.4063 6.6694 19 1 7.4667 -6.3758 6.2523 20 6 5.0833 -2.4321 4.1368 21 6 5.3458 0.0048 -0.0068 22 6 4.6579 0.6118 -1.0384 23 6 3.2717 0.6157 -1.0441 24 8 2.5971 1.2130 -2.0601 25 1 2.7343 -1.0962 1.8438 26 1 6.2569 -1.5575 1.9215 27 1 3.6381 0.4646 3.1586 28 1 2.5966 0.2591 5.3761 29 1 3.1253 -1.6548 6.8200 30 1 5.4324 -5.8901 3.9880 31 1 5.7815 -3.1799 3.7905 32 1 6.4259 0.0050 -0.0078 33 1 5.2011 1.0856 -1.8426 34 1 2.4015 0.6243 -2.8019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210533788.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:15 Heat of formation + Delta-G solvation = 17.887786 kcal Electronic energy + Delta-G solvation = -20028.585834 eV Core-core repulsion = 16890.481601 eV Total energy + Delta-G solvation = -3138.104233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20584 -39.72339 -38.03913 -37.59061 -35.93107 -34.99368 -32.45293 -31.40653 -30.81663 -28.41364 -27.19632 -25.03516 -23.56849 -22.90213 -21.84684 -20.18626 -19.32304 -18.96976 -17.89373 -17.04922 -16.73099 -16.57265 -16.36208 -16.11209 -15.14006 -14.96875 -14.83756 -14.60739 -14.29750 -14.21476 -14.09279 -13.73312 -13.45831 -13.30300 -13.03868 -12.83521 -12.75486 -12.52203 -12.12245 -11.70088 -11.63883 -11.51431 -11.27701 -10.92054 -10.00054 -9.50373 -9.31120 -8.62782 -7.99220 -6.36133 -0.26780 0.29418 1.01165 1.18295 1.40406 1.51916 1.54743 1.55337 1.93292 2.22290 2.50176 2.71456 2.82402 2.88239 3.26956 3.76700 3.94616 4.21398 4.37083 4.40806 4.58868 4.69846 4.81158 4.93179 5.03747 5.16046 5.22463 5.26660 5.31812 5.39829 5.53860 5.65448 5.91581 6.03400 6.13285 6.17628 6.37347 6.49685 6.82201 6.83813 6.91217 6.97697 7.09180 8.34179 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024217 B = 0.004113 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.958537 B = 6805.785855 C = 7139.049932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.280 3.720 3 C -0.038 4.038 4 C -0.119 4.119 5 C 0.182 3.818 6 N -0.679 5.679 7 C 0.183 3.817 8 C -0.269 4.269 9 C -0.075 4.075 10 C -0.263 4.263 11 C 0.098 3.902 12 C -0.498 4.498 13 H 0.073 0.927 14 C 0.039 3.961 15 N -0.821 5.821 16 Si 0.979 3.021 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.262 1.262 20 C -0.219 4.219 21 C -0.117 4.117 22 C -0.093 4.093 23 C 0.115 3.885 24 O -0.501 6.501 25 H 0.113 0.887 26 H 0.414 0.586 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.287 0.713 31 H 0.113 0.887 32 H 0.164 0.836 33 H 0.176 0.824 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.334 6.116 -11.939 14.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.035 4.035 3 C -0.043 4.043 4 C -0.144 4.144 5 C 0.082 3.918 6 N -0.302 5.302 7 C 0.087 3.913 8 C -0.291 4.291 9 C -0.094 4.094 10 C -0.283 4.283 11 C 0.095 3.905 12 C -0.527 4.527 13 H 0.091 0.909 14 C -0.176 4.176 15 N -0.447 5.447 16 Si 0.800 3.200 17 H -0.184 1.184 18 H -0.194 1.194 19 H -0.186 1.186 20 C -0.242 4.242 21 C -0.139 4.139 22 C -0.112 4.112 23 C 0.066 3.934 24 O -0.314 6.314 25 H 0.131 0.869 26 H 0.251 0.749 27 H 0.128 0.872 28 H 0.134 0.866 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.182 0.818 33 H 0.194 0.806 34 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 3.542 6.448 -11.714 13.832 hybrid contribution 0.529 -1.382 0.544 1.577 sum 4.072 5.065 -11.169 12.922 Atomic orbital electron populations 1.81180 1.13118 1.10299 1.09115 1.25823 0.92877 0.92280 0.92479 1.16218 0.83497 1.05272 0.99295 1.20796 0.93644 1.01470 0.98468 1.17789 0.90300 0.94247 0.89464 1.42055 1.18283 1.63556 1.06324 1.17559 0.95489 0.93250 0.85014 1.20408 1.08795 1.01237 0.98616 1.20674 0.98169 0.96744 0.93830 1.21129 1.05670 1.00138 1.01386 1.17764 0.88607 0.91906 0.92215 1.19857 1.40773 0.97120 0.94972 0.90880 1.26675 0.93532 1.00933 0.96492 1.69870 1.35154 1.25977 1.13703 0.85199 0.78575 0.77012 0.79179 1.18429 1.19386 1.18612 1.21026 1.07514 0.97729 0.97922 1.21177 1.01743 0.97483 0.93481 1.21353 0.91491 0.98606 0.99727 1.18227 0.90381 0.95913 0.88923 1.84769 1.76645 1.39957 1.30023 0.86879 0.74856 0.87233 0.86618 0.88882 0.90222 0.86919 0.81829 0.80648 0.73046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.16 18.54 19.01 0.35 -15.81 16 2 C 0.28 8.76 14.86 88.33 1.31 10.07 16 3 C -0.04 -1.03 5.75 -21.22 -0.12 -1.15 16 4 C -0.12 -3.67 7.59 22.67 0.17 -3.50 16 5 C 0.18 5.01 6.02 38.10 0.23 5.24 16 6 N -0.68 -22.04 5.47 -180.67 -0.99 -23.03 16 7 C 0.18 7.72 5.89 38.17 0.22 7.95 16 8 C -0.27 -11.24 7.79 22.59 0.18 -11.06 16 9 C -0.08 -3.29 10.01 22.19 0.22 -3.07 16 10 C -0.26 -12.89 9.79 22.76 0.22 -12.67 16 11 C 0.10 5.18 5.58 -21.31 -0.12 5.06 16 12 C -0.50 -26.40 9.06 23.46 0.21 -26.18 16 13 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 14 C 0.04 1.89 5.18 85.25 0.44 2.34 16 15 N -0.82 -41.37 10.82 21.82 0.24 -41.13 16 16 Si 0.98 37.21 29.59 68.60 2.03 39.23 16 17 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 18 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 19 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 20 C -0.22 -10.83 8.60 22.86 0.20 -10.63 16 21 C -0.12 -2.15 9.92 22.43 0.22 -1.93 16 22 C -0.09 -1.45 9.97 22.32 0.22 -1.23 16 23 C 0.11 2.34 6.71 22.82 0.15 2.49 16 24 O -0.50 -8.88 12.93 -91.26 -1.18 -10.06 16 25 H 0.11 4.24 6.37 -2.91 -0.02 4.22 16 26 H 0.41 11.56 8.89 -92.71 -0.82 10.74 16 27 H 0.11 4.18 6.60 -2.91 -0.02 4.16 16 28 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 29 H 0.09 4.38 8.06 -2.91 -0.02 4.35 16 30 H 0.29 13.03 8.30 -92.71 -0.77 12.26 16 31 H 0.11 5.76 6.06 -2.91 -0.02 5.74 16 32 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.41 3.44 9.06 -74.06 -0.67 2.77 16 Total: -1.00 -64.13 306.80 3.90 -60.23 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -0.32 Total: 28.84 kcal Atomic # 6 Polarization: -42.04 SS G_CDS: 3.77 Total: -38.28 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -0.40 Total: -79.97 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -1.18 Total: -10.06 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.23 kcal Total: -64.13 3.90 -60.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210533788.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.119 kcal (2) G-P(sol) polarization free energy of solvation -64.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds