Wall clock time and date at job start Fri Apr 10 2020 17:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86799 * 119.99966 * 2 1 4 4 H 1.48501 * 109.47204 * 240.00046 * 3 2 1 5 5 H 1.48501 * 109.47393 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46889 * 120.00307 * 3 2 1 7 7 C 1.39927 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00115 * 192.11220 * 7 2 1 9 9 C 1.41413 * 119.99928 * 12.10563 * 7 2 1 10 10 C 1.40790 * 120.20971 * 207.46722 * 9 7 2 11 11 C 1.37645 * 119.89814 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32998 * 359.72821 * 11 10 9 13 13 C 1.39319 * 120.41764 * 0.55044 * 12 11 10 14 14 N 1.39702 * 119.95270 * 179.72208 * 13 12 11 15 15 C 1.39922 * 120.00060 * 328.05920 * 14 13 12 16 16 C 1.39342 * 119.87163 * 334.89657 * 15 14 13 17 17 C 1.37816 * 120.40237 * 180.25030 * 16 15 14 18 18 C 1.38698 * 119.97315 * 359.49124 * 17 16 15 19 19 O 1.35219 * 133.83594 * 180.18071 * 18 17 16 20 20 C 1.34206 * 108.15964 * 180.31101 * 19 18 17 21 21 N 1.29922 * 110.29237 * 0.02562 * 20 19 18 22 22 C 1.36078 * 108.80878 * 0.02562 * 21 20 19 23 23 C 1.38333 * 119.86965 * 154.91212 * 15 14 13 24 24 C 1.38340 * 120.09376 * 359.45140 * 13 12 11 25 25 H 0.97004 * 120.00057 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.04594 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.83538 * 180.02562 * 11 10 9 28 28 H 1.07997 * 119.79131 * 180.26935 * 12 11 10 29 29 H 0.97000 * 120.00331 * 148.06197 * 14 13 12 30 30 H 1.07998 * 119.79576 * 359.97431 * 16 15 14 31 31 H 1.07991 * 120.01098 * 179.71935 * 17 16 15 32 32 H 1.07997 * 124.85170 * 179.97438 * 20 19 18 33 33 H 1.07993 * 120.16509 * 359.97438 * 23 15 14 34 34 H 1.07994 * 120.16084 * 180.25409 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0699 -1.2223 0.1957 9 6 1.3245 -2.4227 -0.2579 10 6 1.8047 -3.6343 0.2748 11 6 1.1346 -4.8093 0.0198 12 6 -0.0141 -4.8056 -0.7544 13 6 -0.4979 -3.6154 -1.2930 14 7 -1.6540 -3.6238 -2.0772 15 6 -1.9547 -4.7380 -2.8683 16 6 -0.9314 -5.5805 -3.2981 17 6 -1.2146 -6.6780 -4.0820 18 6 -2.5260 -6.9550 -4.4387 19 8 -3.1112 -7.9281 -5.1728 20 6 -4.4331 -7.6972 -5.1955 21 7 -4.7154 -6.6276 -4.5141 22 6 -3.5615 -6.1104 -4.0114 23 6 -3.2667 -4.9986 -3.2211 24 6 0.1617 -2.4243 -1.0478 25 1 -0.4850 0.8401 0.0004 26 1 2.6974 -3.6416 0.8826 27 1 1.5036 -5.7380 0.4293 28 1 -0.5353 -5.7320 -0.9453 29 1 -2.2484 -2.8572 -2.0732 30 1 0.0903 -5.3695 -3.0188 31 1 -0.4161 -7.3242 -4.4153 32 1 -5.1583 -8.3120 -5.7078 33 1 -4.0586 -4.3448 -2.8870 34 1 -0.2147 -1.5005 -1.4614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210573304.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:21 Heat of formation + Delta-G solvation = 45.912224 kcal Electronic energy + Delta-G solvation = -20100.268085 eV Core-core repulsion = 16963.379083 eV Total energy + Delta-G solvation = -3136.889002 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.09405 -40.54697 -38.77176 -36.27633 -35.53366 -35.04431 -31.75607 -31.35448 -30.54234 -28.70910 -27.19314 -24.80236 -23.84129 -23.02859 -22.63399 -21.90048 -19.56622 -18.86660 -18.37622 -17.89681 -17.56732 -17.24812 -16.47305 -16.42278 -15.49498 -15.22784 -15.07564 -14.80253 -14.56906 -14.18376 -13.88237 -13.81469 -13.42647 -12.96770 -12.81587 -12.70737 -12.60042 -12.42381 -12.22634 -11.69720 -11.56240 -11.44341 -11.24645 -11.00219 -9.57697 -9.54227 -9.27481 -8.63246 -8.05103 -6.36867 -0.24837 0.22399 1.01555 1.19976 1.39805 1.50247 1.52633 1.57688 1.72077 2.22232 2.39705 2.63316 2.81518 3.22981 3.58552 3.74708 4.03084 4.17936 4.23150 4.33792 4.47805 4.68827 4.73649 4.93666 5.03027 5.10870 5.16419 5.19487 5.24842 5.34097 5.38694 5.45761 5.57627 5.89658 6.02861 6.13451 6.17784 6.49787 6.63930 6.78803 6.82880 6.98063 7.06621 8.36763 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.033252 B = 0.003714 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.848909 B = 7537.811757 C = 8050.702994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.099 3.901 10 C -0.255 4.255 11 C -0.071 4.071 12 C -0.264 4.264 13 C 0.179 3.821 14 N -0.680 5.680 15 C 0.202 3.798 16 C -0.140 4.140 17 C -0.049 4.049 18 C -0.050 4.050 19 O -0.220 6.220 20 C 0.252 3.748 21 N -0.531 5.531 22 C 0.040 3.960 23 C -0.153 4.153 24 C -0.215 4.215 25 H 0.285 0.715 26 H 0.098 0.902 27 H 0.125 0.875 28 H 0.111 0.889 29 H 0.408 0.592 30 H 0.143 0.857 31 H 0.163 0.837 32 H 0.310 0.690 33 H 0.134 0.866 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.505 -10.694 -8.996 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.096 3.904 10 C -0.275 4.275 11 C -0.089 4.089 12 C -0.286 4.286 13 C 0.083 3.917 14 N -0.303 5.303 15 C 0.100 3.900 16 C -0.161 4.161 17 C -0.068 4.068 18 C -0.100 4.100 19 O -0.112 6.112 20 C 0.022 3.978 21 N -0.261 5.261 22 C -0.071 4.071 23 C -0.177 4.177 24 C -0.238 4.238 25 H 0.096 0.904 26 H 0.117 0.883 27 H 0.143 0.857 28 H 0.129 0.871 29 H 0.245 0.755 30 H 0.161 0.839 31 H 0.181 0.819 32 H 0.324 0.676 33 H 0.152 0.848 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.186 -10.329 -8.845 14.940 hybrid contribution 0.505 1.057 0.192 1.187 sum -5.682 -9.272 -8.653 13.897 Atomic orbital electron populations 1.69856 1.08742 1.30216 1.36671 1.26692 0.95593 1.04279 0.91380 0.85266 0.78714 0.75869 0.79942 1.18596 1.19449 1.18504 1.19812 0.96535 0.91802 1.44731 0.90587 1.17749 0.91453 0.93085 0.88084 1.21195 1.04378 0.93486 1.08479 1.20702 0.94513 0.97143 0.96574 1.20447 1.02379 0.96016 1.09721 1.17631 0.87125 0.94461 0.92449 1.42138 1.24720 1.17481 1.45927 1.17622 0.92399 0.88735 0.91199 1.21024 0.99562 0.95860 0.99608 1.19843 0.92059 0.97495 0.97400 1.20297 0.96192 0.91829 1.01704 1.84509 1.22835 1.44797 1.59028 1.29490 0.81354 0.93156 0.93789 1.70598 1.27996 1.11904 1.15571 1.19585 0.89083 0.97550 1.00873 1.19652 0.94667 0.98840 1.04549 1.21008 1.00299 0.95919 1.06557 0.90409 0.88341 0.85742 0.87085 0.75541 0.83929 0.81949 0.67582 0.84833 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.63 10.83 21.82 0.24 -42.40 16 2 C 0.03 1.72 5.24 85.25 0.45 2.17 16 3 Si 0.98 37.96 29.58 68.60 2.03 39.99 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.50 -26.49 9.06 23.46 0.21 -26.28 16 8 H 0.08 3.88 7.87 -2.91 -0.02 3.86 16 9 C 0.10 5.24 5.56 -21.31 -0.12 5.12 16 10 C -0.26 -12.15 9.79 22.75 0.22 -11.93 16 11 C -0.07 -2.96 10.01 22.20 0.22 -2.73 16 12 C -0.26 -10.98 7.73 22.60 0.17 -10.81 16 13 C 0.18 7.89 5.90 38.17 0.23 8.12 16 14 N -0.68 -25.69 5.46 -180.63 -0.99 -26.68 16 15 C 0.20 6.86 6.05 38.14 0.23 7.09 16 16 C -0.14 -4.37 7.84 22.44 0.18 -4.19 16 17 C -0.05 -1.30 10.05 22.28 0.22 -1.07 16 18 C -0.05 -1.39 7.43 22.88 0.17 -1.22 16 19 O -0.22 -4.99 10.78 -10.82 -0.12 -5.11 16 20 C 0.25 4.45 13.13 130.53 1.71 6.16 16 21 N -0.53 -14.32 11.34 -308.46 -3.50 -17.81 16 22 C 0.04 1.24 7.23 39.30 0.28 1.52 16 23 C -0.15 -4.92 9.98 22.61 0.23 -4.69 16 24 C -0.22 -10.94 8.57 22.86 0.20 -10.74 16 25 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 26 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 27 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 28 H 0.11 4.22 6.55 -2.91 -0.02 4.20 16 29 H 0.41 14.58 8.88 -92.71 -0.82 13.76 16 30 H 0.14 4.71 6.27 -2.91 -0.02 4.69 16 31 H 0.16 3.27 8.06 -2.92 -0.02 3.25 16 32 H 0.31 0.99 8.06 -2.91 -0.02 0.96 16 33 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 34 H 0.11 5.68 6.17 -2.91 -0.02 5.67 16 Total: -1.00 -63.86 297.20 2.60 -61.26 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.33 Total: 34.24 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 4.60 Total: -43.49 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -4.25 Total: -86.89 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.12 Total: -5.11 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -63.86 2.60 -61.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210573304.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.171 kcal (2) G-P(sol) polarization free energy of solvation -63.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds