Wall clock time and date at job start Fri Apr 10 2020 17:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39993 * 120.59852 * 117.27398 * 3 2 1 5 5 C 1.38378 * 118.34424 * 180.25887 * 4 3 2 6 6 C 1.38320 * 119.45581 * 359.51180 * 5 4 3 7 7 N 1.31910 * 121.19276 * 0.24807 * 6 5 4 8 8 C 1.32202 * 121.80678 * 0.02562 * 7 6 5 9 9 O 1.35480 * 119.80082 * 180.02562 * 8 7 6 10 10 C 1.42897 * 117.00075 * 359.97438 * 9 8 7 11 11 H 1.09004 * 109.47195 * 30.00491 * 10 9 8 12 12 C 1.50696 * 109.47056 * 270.00198 * 10 9 8 13 13 H 1.07995 * 120.00192 * 125.46501 * 12 10 9 14 14 C 1.37877 * 119.99684 * 305.45572 * 12 10 9 15 15 N 1.31513 * 120.00207 * 8.46403 * 14 12 10 16 16 Si 1.86802 * 119.99760 * 188.46437 * 14 12 10 17 17 H 1.48507 * 109.47314 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47270 * 120.00360 * 16 14 12 19 19 H 1.48503 * 109.47187 * 240.00479 * 16 14 12 20 20 C 1.50699 * 109.47000 * 149.99871 * 10 9 8 21 21 C 1.38236 * 120.00203 * 29.27603 * 20 10 9 22 22 C 1.38232 * 120.00051 * 179.81097 * 21 20 10 23 23 C 1.38235 * 119.99970 * 0.39192 * 22 21 20 24 24 C 1.38228 * 120.00080 * 359.86049 * 23 22 21 25 25 C 1.38233 * 120.00030 * 209.55005 * 20 10 9 26 26 H 1.07999 * 120.82814 * 0.04500 * 4 3 2 27 27 H 1.07997 * 120.26787 * 179.78824 * 5 4 3 28 28 H 1.07998 * 119.40313 * 180.27945 * 6 5 4 29 29 H 0.96998 * 119.99704 * 179.97438 * 15 14 12 30 30 H 1.07999 * 119.99675 * 0.02562 * 21 20 10 31 31 H 1.07999 * 119.99821 * 180.23248 * 22 21 20 32 32 H 1.07997 * 119.99878 * 179.83646 * 23 22 21 33 33 H 1.08003 * 120.00489 * 179.97438 * 24 23 22 34 34 H 1.07997 * 120.00254 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2803 0.5531 -1.0710 5 6 4.6631 0.5239 -1.0252 6 6 5.2956 -0.0351 0.0705 7 7 4.6046 -0.5458 1.0714 8 6 3.2826 -0.5485 1.0755 9 8 2.6137 -1.0835 2.1252 10 6 3.4005 -1.6251 3.1880 11 1 4.3435 -1.0823 3.2549 12 6 3.6772 -3.0813 2.9164 13 1 4.6939 -3.4454 2.9080 14 6 2.6323 -3.9488 2.6788 15 7 1.4125 -3.4823 2.5238 16 14 2.9491 -5.7870 2.5772 17 1 4.3954 -6.0523 2.7855 18 1 2.1625 -6.4837 3.6265 19 1 2.5415 -6.2864 1.2394 20 6 2.6500 -1.4901 4.4878 21 6 1.2677 -1.5003 4.4921 22 6 0.5794 -1.3805 5.6849 23 6 1.2732 -1.2423 6.8724 24 6 2.6554 -1.2269 6.8676 25 6 3.3438 -1.3505 5.6752 26 1 2.7636 0.9882 -1.9137 27 1 5.2435 0.9383 -1.8362 28 1 6.3748 -0.0534 0.1075 29 1 0.6775 -4.0927 2.3563 30 1 0.7256 -1.6054 3.5640 31 1 -0.5005 -1.3922 5.6886 32 1 0.7354 -1.1460 7.8040 33 1 3.1976 -1.1185 7.7954 34 1 4.4237 -1.3385 5.6715 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225408012.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:51 Heat of formation + Delta-G solvation = 61.230329 kcal Electronic energy + Delta-G solvation = -20969.593512 eV Core-core repulsion = 17833.368752 eV Total energy + Delta-G solvation = -3136.224760 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.07013 -38.41334 -36.80851 -35.91911 -33.10087 -32.17783 -30.96068 -30.02159 -29.68661 -26.96309 -24.20960 -23.66461 -22.38358 -21.51151 -20.27263 -18.64655 -17.75583 -16.63034 -16.37800 -15.53672 -15.13882 -14.65110 -14.44498 -14.17730 -13.75885 -13.36536 -13.18396 -12.98209 -12.67367 -12.50071 -12.39541 -12.18657 -11.89270 -11.73203 -11.50915 -11.42037 -11.05340 -10.62549 -10.56152 -10.14438 -9.72605 -9.58148 -9.33958 -9.01139 -8.75775 -7.99733 -7.80468 -7.60351 -6.19545 -4.37373 1.10583 1.74475 2.29607 2.40410 3.19407 3.27060 3.28870 3.31697 3.55274 3.95406 4.26371 4.36088 4.44195 4.77752 4.91545 5.07113 5.11743 5.41104 5.54140 5.68815 5.75673 5.81347 5.92675 6.20119 6.24468 6.30862 6.46363 6.59348 6.72275 6.78730 6.91572 7.10228 7.33213 7.49728 7.67955 7.78055 7.88411 8.03523 8.08572 8.23926 8.43211 8.76585 9.34656 10.78333 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.007322 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.846997 B = 3823.286842 C = 4431.838790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.280 3.720 3 C -0.133 4.133 4 C 0.005 3.995 5 C -0.248 4.248 6 C 0.173 3.827 7 N -0.531 5.531 8 C 0.405 3.595 9 O -0.262 6.262 10 C 0.240 3.760 11 H 0.059 0.941 12 C -0.536 4.536 13 H 0.071 0.929 14 C 0.082 3.918 15 N -0.842 5.842 16 Si 0.891 3.109 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.283 1.283 20 C -0.040 4.040 21 C -0.071 4.071 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.138 4.138 25 C -0.123 4.123 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.156 0.844 29 H 0.265 0.735 30 H 0.146 0.854 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 7.071 -2.247 9.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.036 4.036 3 C -0.140 4.140 4 C -0.023 4.023 5 C -0.269 4.269 6 C 0.013 3.987 7 N -0.256 5.256 8 C 0.222 3.778 9 O -0.164 6.164 10 C 0.187 3.813 11 H 0.077 0.923 12 C -0.573 4.573 13 H 0.089 0.911 14 C -0.127 4.127 15 N -0.475 5.475 16 Si 0.718 3.282 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.209 1.209 20 C -0.041 4.041 21 C -0.089 4.089 22 C -0.158 4.158 23 C -0.164 4.164 24 C -0.156 4.156 25 C -0.141 4.141 26 H 0.156 0.844 27 H 0.154 0.846 28 H 0.174 0.826 29 H 0.075 0.925 30 H 0.164 0.836 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.930 6.586 -1.427 7.801 hybrid contribution 0.247 -1.062 -0.615 1.252 sum 4.177 5.523 -2.042 7.220 Atomic orbital electron populations 1.81111 1.11955 1.09679 1.08036 1.25045 0.92045 0.93076 0.93396 1.15998 0.85784 1.13738 0.98472 1.21304 0.94011 0.92139 0.94842 1.21674 0.94352 1.08896 1.01946 1.22684 1.00049 0.88393 0.87581 1.67660 1.06742 1.21732 1.29434 1.20033 0.86824 0.83811 0.87128 1.86539 1.36676 1.66569 1.26585 1.19063 0.88577 0.94019 0.79661 0.92305 1.21278 0.93755 0.91493 1.50748 0.91062 1.25058 0.94994 0.99161 0.93460 1.69965 0.99584 1.34832 1.43165 0.86542 0.78804 0.85040 0.77785 1.19388 1.20651 1.20852 1.20022 0.94202 0.95190 0.94672 1.21481 0.94337 0.94489 0.98594 1.21127 0.98996 1.02436 0.93288 1.20856 0.94360 1.03899 0.97296 1.20793 0.94227 1.03512 0.97098 1.20757 0.99178 1.02014 0.92163 0.84402 0.84644 0.82634 0.92537 0.83617 0.87661 0.87805 0.87467 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.23 18.54 41.84 0.78 -8.45 16 2 C 0.28 5.57 14.91 -22.47 -0.34 5.23 16 3 C -0.13 -2.38 5.77 -106.53 -0.61 -3.00 16 4 C 0.00 0.06 9.90 -38.87 -0.38 -0.32 16 5 C -0.25 -2.86 10.09 -39.50 -0.40 -3.26 16 6 C 0.17 2.35 11.17 -17.49 -0.20 2.16 16 7 N -0.53 -9.88 8.64 -12.97 -0.11 -10.00 16 8 C 0.40 8.35 7.46 -16.61 -0.12 8.22 16 9 O -0.26 -6.27 7.03 -18.13 -0.13 -6.40 16 10 C 0.24 5.73 2.33 -29.04 -0.07 5.67 16 11 H 0.06 1.35 6.93 -51.93 -0.36 0.99 16 12 C -0.54 -13.84 8.85 -34.44 -0.30 -14.15 16 13 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 14 C 0.08 2.13 5.22 -17.82 -0.09 2.04 16 15 N -0.84 -22.60 9.55 55.43 0.53 -22.08 16 16 Si 0.89 20.65 29.55 -169.99 -5.02 15.63 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.04 -0.93 4.82 -104.62 -0.50 -1.44 16 21 C -0.07 -1.65 8.08 -39.58 -0.32 -1.97 16 22 C -0.14 -2.87 10.05 -39.58 -0.40 -3.27 16 23 C -0.15 -2.69 10.05 -39.59 -0.40 -3.09 16 24 C -0.14 -2.54 10.05 -39.59 -0.40 -2.94 16 25 C -0.12 -2.51 9.70 -39.58 -0.38 -2.90 16 26 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 28 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.15 3.76 5.99 -52.49 -0.31 3.45 16 31 H 0.11 1.94 8.06 -52.49 -0.42 1.51 16 32 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 34 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 308.53 15.07 4.65 4.65 Total: -1.00 -29.59 308.53 -7.41 -36.99 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.18 Total: 2.66 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -4.92 Total: -13.01 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 1.19 Total: -40.52 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.13 Total: -6.40 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.59 -7.41 -36.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225408012.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.224 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds