Wall clock time and date at job start Fri Apr 10 2020 17:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39993 * 120.59852 * 117.27398 * 3 2 1 5 5 C 1.38378 * 118.34424 * 180.25887 * 4 3 2 6 6 C 1.38320 * 119.45581 * 359.51180 * 5 4 3 7 7 N 1.31910 * 121.19276 * 0.24807 * 6 5 4 8 8 C 1.32202 * 121.80678 * 0.02562 * 7 6 5 9 9 O 1.35480 * 119.80082 * 180.02562 * 8 7 6 10 10 C 1.42897 * 117.00075 * 359.97438 * 9 8 7 11 11 H 1.09004 * 109.47195 * 30.00491 * 10 9 8 12 12 C 1.50696 * 109.47056 * 270.00198 * 10 9 8 13 13 H 1.07995 * 120.00192 * 125.46501 * 12 10 9 14 14 C 1.37877 * 119.99684 * 305.45572 * 12 10 9 15 15 N 1.31513 * 120.00207 * 8.46403 * 14 12 10 16 16 Si 1.86802 * 119.99760 * 188.46437 * 14 12 10 17 17 H 1.48507 * 109.47314 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47270 * 120.00360 * 16 14 12 19 19 H 1.48503 * 109.47187 * 240.00479 * 16 14 12 20 20 C 1.50699 * 109.47000 * 149.99871 * 10 9 8 21 21 C 1.38236 * 120.00203 * 29.27603 * 20 10 9 22 22 C 1.38232 * 120.00051 * 179.81097 * 21 20 10 23 23 C 1.38235 * 119.99970 * 0.39192 * 22 21 20 24 24 C 1.38228 * 120.00080 * 359.86049 * 23 22 21 25 25 C 1.38233 * 120.00030 * 209.55005 * 20 10 9 26 26 H 1.07999 * 120.82814 * 0.04500 * 4 3 2 27 27 H 1.07997 * 120.26787 * 179.78824 * 5 4 3 28 28 H 1.07998 * 119.40313 * 180.27945 * 6 5 4 29 29 H 0.96998 * 119.99704 * 179.97438 * 15 14 12 30 30 H 1.07999 * 119.99675 * 0.02562 * 21 20 10 31 31 H 1.07999 * 119.99821 * 180.23248 * 22 21 20 32 32 H 1.07997 * 119.99878 * 179.83646 * 23 22 21 33 33 H 1.08003 * 120.00489 * 179.97438 * 24 23 22 34 34 H 1.07997 * 120.00254 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2803 0.5531 -1.0710 5 6 4.6631 0.5239 -1.0252 6 6 5.2956 -0.0351 0.0705 7 7 4.6046 -0.5458 1.0714 8 6 3.2826 -0.5485 1.0755 9 8 2.6137 -1.0835 2.1252 10 6 3.4005 -1.6251 3.1880 11 1 4.3435 -1.0823 3.2549 12 6 3.6772 -3.0813 2.9164 13 1 4.6939 -3.4454 2.9080 14 6 2.6323 -3.9488 2.6788 15 7 1.4125 -3.4823 2.5238 16 14 2.9491 -5.7870 2.5772 17 1 4.3954 -6.0523 2.7855 18 1 2.1625 -6.4837 3.6265 19 1 2.5415 -6.2864 1.2394 20 6 2.6500 -1.4901 4.4878 21 6 1.2677 -1.5003 4.4921 22 6 0.5794 -1.3805 5.6849 23 6 1.2732 -1.2423 6.8724 24 6 2.6554 -1.2269 6.8676 25 6 3.3438 -1.3505 5.6752 26 1 2.7636 0.9882 -1.9137 27 1 5.2435 0.9383 -1.8362 28 1 6.3748 -0.0534 0.1075 29 1 0.6775 -4.0927 2.3563 30 1 0.7256 -1.6054 3.5640 31 1 -0.5005 -1.3922 5.6886 32 1 0.7354 -1.1460 7.8040 33 1 3.1976 -1.1185 7.7954 34 1 4.4237 -1.3385 5.6715 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225408012.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:14:50 Heat of formation + Delta-G solvation = 43.975114 kcal Electronic energy + Delta-G solvation = -20970.341754 eV Core-core repulsion = 17833.368752 eV Total energy + Delta-G solvation = -3136.973002 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41805 -39.96702 -38.32845 -37.47758 -34.92818 -33.44866 -32.60424 -31.53321 -31.08312 -28.74913 -25.55075 -25.25118 -23.83306 -23.05600 -21.88507 -20.00721 -19.35853 -18.04898 -17.97713 -17.02665 -16.89226 -16.04496 -15.92329 -15.73005 -15.23556 -14.89035 -14.74858 -14.50482 -14.08111 -13.96085 -13.92943 -13.68152 -13.52718 -13.36425 -13.06850 -12.90588 -12.83936 -12.37433 -12.23631 -11.78664 -11.41958 -11.11360 -10.74617 -10.70536 -10.32480 -9.56965 -9.32190 -9.13361 -8.11907 -6.36327 -0.13799 0.56006 0.70393 0.82264 1.33276 1.37372 1.46760 1.72593 2.10500 2.35237 2.51327 2.99495 3.11422 3.13964 3.21913 3.70553 4.07408 4.17483 4.27153 4.29894 4.40006 4.52624 4.60714 4.71588 4.84781 4.96786 5.06651 5.16054 5.24219 5.34335 5.48460 5.61190 5.71158 5.77261 5.91684 6.00971 6.15654 6.39869 6.50396 6.58332 6.95406 7.13604 7.38739 8.82200 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.007322 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.846997 B = 3823.286842 C = 4431.838790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.290 3.710 3 C -0.158 4.158 4 C 0.017 3.983 5 C -0.215 4.215 6 C 0.167 3.833 7 N -0.562 5.562 8 C 0.368 3.632 9 O -0.292 6.292 10 C 0.247 3.753 11 H 0.055 0.945 12 C -0.547 4.547 13 H 0.061 0.939 14 C 0.042 3.958 15 N -0.863 5.863 16 Si 0.942 3.058 17 H -0.263 1.263 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.068 4.068 21 C -0.095 4.095 22 C -0.151 4.151 23 C -0.138 4.138 24 C -0.129 4.129 25 C -0.133 4.133 26 H 0.176 0.824 27 H 0.191 0.809 28 H 0.196 0.804 29 H 0.257 0.743 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.914 8.064 -2.341 11.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.024 4.024 3 C -0.165 4.165 4 C -0.011 4.011 5 C -0.235 4.235 6 C 0.008 3.992 7 N -0.287 5.287 8 C 0.186 3.814 9 O -0.196 6.196 10 C 0.193 3.807 11 H 0.072 0.928 12 C -0.584 4.584 13 H 0.080 0.920 14 C -0.164 4.164 15 N -0.498 5.498 16 Si 0.768 3.232 17 H -0.186 1.186 18 H -0.209 1.209 19 H -0.211 1.211 20 C -0.068 4.068 21 C -0.114 4.114 22 C -0.169 4.169 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.151 4.151 26 H 0.194 0.806 27 H 0.208 0.792 28 H 0.213 0.787 29 H 0.066 0.934 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.083 7.596 -1.543 9.853 hybrid contribution -0.247 -1.218 -0.666 1.410 sum 5.836 6.378 -2.209 8.923 Atomic orbital electron populations 1.81085 1.13139 1.11455 1.09484 1.25546 0.92668 0.91907 0.92235 1.16300 0.84729 1.15742 0.99736 1.21828 0.94877 0.90369 0.93993 1.22258 0.93699 1.05606 1.01901 1.23516 1.01776 0.86946 0.86913 1.67619 1.06013 1.23171 1.31872 1.20334 0.88047 0.85711 0.87309 1.86448 1.37350 1.68104 1.27673 1.18861 0.88655 0.92851 0.80336 0.92754 1.21433 0.93146 0.93068 1.50735 0.92045 1.25645 0.94919 1.02204 0.93604 1.70150 0.99922 1.35144 1.44535 0.85758 0.78780 0.81345 0.77328 1.18645 1.20862 1.21056 1.20181 0.94373 0.96824 0.95452 1.21247 0.94717 0.96967 0.98419 1.21350 0.99907 1.02387 0.93250 1.21284 0.94717 1.01774 0.97821 1.21264 0.94470 1.01205 0.97781 1.21039 1.00082 1.01892 0.92124 0.80625 0.79211 0.78713 0.93366 0.87215 0.86335 0.83848 0.83341 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -21.35 18.54 19.00 0.35 -21.00 16 2 C 0.29 12.05 14.91 88.33 1.32 13.37 16 3 C -0.16 -5.72 5.77 -21.10 -0.12 -5.84 16 4 C 0.02 0.39 9.90 22.73 0.23 0.62 16 5 C -0.21 -3.95 10.09 22.32 0.23 -3.73 16 6 C 0.17 4.05 11.17 84.70 0.95 4.99 16 7 N -0.56 -20.85 8.64 -307.95 -2.66 -23.51 16 8 C 0.37 15.67 7.46 85.14 0.64 16.30 16 9 O -0.29 -14.88 7.03 -87.79 -0.62 -15.49 16 10 C 0.25 12.38 2.33 29.10 0.07 12.44 16 11 H 0.05 2.63 6.93 -2.38 -0.02 2.61 16 12 C -0.55 -29.36 8.85 25.60 0.23 -29.14 16 13 H 0.06 3.29 7.83 -2.91 -0.02 3.27 16 14 C 0.04 2.26 5.22 84.65 0.44 2.70 16 15 N -0.86 -48.98 9.55 21.45 0.20 -48.78 16 16 Si 0.94 43.57 29.55 68.60 2.03 45.60 16 17 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 C -0.07 -3.26 4.82 -19.87 -0.10 -3.35 16 21 C -0.09 -4.66 8.08 22.27 0.18 -4.48 16 22 C -0.15 -6.21 10.05 22.27 0.22 -5.99 16 23 C -0.14 -4.78 10.05 22.27 0.22 -4.56 16 24 C -0.13 -4.43 10.05 22.27 0.22 -4.21 16 25 C -0.13 -5.40 9.70 22.27 0.22 -5.19 16 26 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 27 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 28 H 0.20 3.04 8.06 -2.91 -0.02 3.02 16 29 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.11 6.15 5.99 -2.91 -0.02 6.13 16 31 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 33 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -70.91 308.53 5.37 -65.54 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 1.13 Total: 13.69 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 4.93 Total: -16.05 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -2.10 Total: -93.28 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.62 Total: -15.49 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.91 5.37 -65.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225408012.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.517 kcal (2) G-P(sol) polarization free energy of solvation -70.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds