Wall clock time and date at job start Fri Apr 10 2020 17:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00326 * 2 1 4 4 H 1.48499 * 109.47073 * 270.00325 * 3 2 1 5 5 H 1.48504 * 109.46558 * 29.99722 * 3 2 1 6 6 H 1.48489 * 109.47282 * 149.99733 * 3 2 1 7 7 C 1.37883 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99722 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.46908 * 180.02562 * 9 7 2 11 11 C 1.47960 * 111.00163 * 169.99954 * 10 9 7 12 12 C 1.53934 * 86.18058 * 222.41402 * 11 10 9 13 13 O 1.42905 * 113.73169 * 138.07945 * 12 11 10 14 14 C 1.35455 * 116.99852 * 151.90168 * 13 12 11 15 15 N 1.32313 * 119.19617 * 359.72253 * 14 13 12 16 16 C 1.32303 * 120.75756 * 179.76317 * 15 14 13 17 17 C 1.38588 * 119.17517 * 0.50596 * 16 15 14 18 18 N 1.48006 * 120.74047 * 179.73039 * 17 16 15 19 19 O 1.21800 * 120.00031 * 180.02562 * 18 17 16 20 20 O 1.21807 * 119.99777 * 0.02562 * 18 17 16 21 21 C 1.38593 * 118.52270 * 359.75012 * 17 16 15 22 22 N 1.32302 * 119.17143 * 359.97438 * 21 17 16 23 23 C 1.48186 * 111.07427 * 70.56351 * 10 9 7 24 24 H 0.96993 * 120.00194 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47240 * 59.99989 * 9 7 2 26 26 H 1.08996 * 109.46984 * 299.99722 * 9 7 2 27 27 H 1.09001 * 113.75866 * 108.09297 * 11 10 9 28 28 H 1.09001 * 113.75942 * 336.73414 * 11 10 9 29 29 H 1.08998 * 113.73400 * 269.25164 * 12 11 10 30 30 H 1.07999 * 120.41062 * 180.23801 * 16 15 14 31 31 H 1.07996 * 120.41597 * 179.97438 * 21 17 16 32 32 H 1.09000 * 113.75847 * 23.23813 * 23 10 9 33 33 H 1.08998 * 113.82742 * 251.81086 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2055 -3.6158 -0.0015 11 6 1.5160 -4.9029 0.2373 12 6 2.6919 -5.2418 1.1711 13 8 2.2952 -5.8757 2.3888 14 6 3.1935 -6.7057 2.9710 15 7 4.3696 -6.8910 2.3939 16 6 5.2718 -7.6912 2.9382 17 6 4.9679 -8.3464 4.1210 18 7 5.9490 -9.2540 4.7567 19 8 5.6676 -9.8234 5.7960 20 8 7.0379 -9.4316 4.2405 21 6 3.7246 -8.1331 4.6951 22 7 2.8714 -7.3153 4.1004 23 6 2.9005 -3.7223 1.3030 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5564 -0.8919 26 1 0.6240 -2.5576 0.8880 27 1 1.4580 -5.5403 -0.6450 28 1 0.5611 -4.8005 0.7529 29 1 3.5138 -5.7558 0.6727 30 1 6.2315 -7.8353 2.4643 31 1 3.4556 -8.6283 5.6163 32 1 2.3515 -3.2739 2.1310 33 1 3.9467 -3.4183 1.2706 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226732980.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:05 Heat of formation + Delta-G solvation = 64.403294 kcal Electronic energy + Delta-G solvation = -20696.526202 eV Core-core repulsion = 17149.589769 eV Total energy + Delta-G solvation = -3546.936433 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.76237 -41.75339 -39.91912 -37.60643 -36.96379 -34.76826 -33.08761 -32.68395 -29.49779 -27.20607 -26.13636 -25.77575 -25.13898 -23.73138 -21.97057 -19.97943 -19.88256 -19.49782 -19.17708 -17.99475 -17.94493 -16.78561 -16.40179 -16.10771 -15.54086 -14.70272 -14.55475 -14.35685 -14.31345 -13.17937 -13.12633 -12.69585 -12.35431 -12.15414 -11.97725 -11.90365 -11.77096 -11.50932 -11.44628 -11.07428 -10.89196 -10.72763 -10.49319 -10.05387 -9.92590 -9.77769 -9.32874 -8.62885 -8.09949 -6.16956 -4.20043 -0.72797 0.13612 0.80769 0.85678 1.94216 2.82066 3.08339 3.23988 3.30238 3.33320 3.40435 3.67350 3.88556 4.29352 4.40164 4.53210 4.70453 4.87405 5.09818 5.19433 5.50061 5.69149 5.76567 5.82886 5.93584 6.07355 6.13509 6.36610 6.59020 7.00043 7.20168 7.23832 7.44323 7.67391 7.90926 8.22381 8.86542 9.45214 10.94193 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.035764 B = 0.003009 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.713966 B = 9303.206034 C = 9575.049989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.163 3.837 10 N -0.468 5.468 11 C 0.007 3.993 12 C 0.042 3.958 13 O -0.257 6.257 14 C 0.550 3.450 15 N -0.552 5.552 16 C 0.272 3.728 17 C -0.215 4.215 18 N 0.049 4.951 19 O -0.156 6.156 20 O -0.156 6.156 21 C 0.270 3.730 22 N -0.513 5.513 23 C 0.014 3.986 24 H 0.264 0.736 25 H 0.038 0.962 26 H 0.003 0.997 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.200 0.800 31 H 0.203 0.797 32 H 0.080 0.920 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.198 -17.072 7.413 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.037 3.963 10 N -0.193 5.193 11 C -0.122 4.122 12 C -0.014 4.014 13 O -0.154 6.154 14 C 0.252 3.748 15 N -0.282 5.282 16 C 0.103 3.897 17 C -0.306 4.306 18 N 0.567 4.433 19 O -0.372 6.372 20 O -0.372 6.372 21 C 0.100 3.900 22 N -0.239 5.239 23 C -0.115 4.115 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.021 0.979 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.146 0.854 30 H 0.217 0.783 31 H 0.220 0.780 32 H 0.098 0.902 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.863 -15.555 6.019 18.036 hybrid contribution 0.713 0.259 1.113 1.347 sum 7.576 -15.296 7.132 18.500 Atomic orbital electron populations 1.69942 1.06110 1.27101 1.50294 1.24994 0.94905 0.99493 0.95042 0.86452 0.79670 0.82784 0.78271 1.20453 1.21167 1.19810 1.21048 0.93466 0.89777 1.51160 0.91871 1.20262 0.90745 0.88223 0.97078 1.68720 1.21502 1.01964 1.27140 1.24308 0.95912 0.95060 0.96909 1.25589 1.01106 0.93784 0.80946 1.86407 1.36942 1.52278 1.39822 1.21395 0.84446 0.83937 0.85025 1.68538 1.03175 1.21442 1.35080 1.23109 0.97933 0.82166 0.86535 1.22819 0.95745 1.08375 1.03635 1.43016 1.00877 0.99304 1.00060 1.94568 1.83520 1.48193 1.10901 1.94575 1.08810 1.67921 1.65848 1.23243 0.84434 0.85945 0.96419 1.68151 1.34241 1.11696 1.09849 1.24282 1.02143 0.90512 0.94537 0.92686 0.94411 0.97915 0.88747 0.90352 0.85411 0.78293 0.77996 0.90163 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.09 8.84 -34.43 -0.30 -14.39 16 8 H 0.06 1.71 7.80 -52.49 -0.41 1.30 16 9 C 0.16 4.06 4.58 -4.97 -0.02 4.04 16 10 N -0.47 -9.49 6.25 -239.76 -1.50 -10.99 16 11 C 0.01 0.11 7.81 -2.76 -0.02 0.09 16 12 C 0.04 0.62 4.32 -25.80 -0.11 0.51 16 13 O -0.26 -3.77 10.22 -18.06 -0.18 -3.95 16 14 C 0.55 6.99 8.49 -91.26 -0.77 6.22 16 15 N -0.55 -6.13 8.63 -14.74 -0.13 -6.26 16 16 C 0.27 2.33 10.82 -17.22 -0.19 2.15 16 17 C -0.21 -1.90 6.89 -79.69 -0.55 -2.45 16 18 N 0.05 0.49 4.45 34.09 0.15 0.64 16 19 O -0.16 -1.64 18.54 -29.46 -0.55 -2.18 16 20 O -0.16 -1.65 18.54 -29.46 -0.55 -2.20 16 21 C 0.27 2.32 10.82 -17.22 -0.19 2.13 16 22 N -0.51 -5.95 10.46 -14.74 -0.15 -6.10 16 23 C 0.01 0.25 7.32 -2.63 -0.02 0.23 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.00 0.08 7.70 -51.93 -0.40 -0.32 16 27 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.08 1.31 7.79 -51.93 -0.40 0.91 16 29 H 0.13 1.72 6.88 -51.93 -0.36 1.36 16 30 H 0.20 1.13 7.70 -52.49 -0.40 0.73 16 31 H 0.20 1.10 7.70 -52.49 -0.40 0.69 16 32 H 0.08 1.55 7.79 -51.93 -0.40 1.14 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 302.69 15.07 4.56 4.56 Total: -1.00 -30.39 302.69 -8.09 -38.48 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: -3.19 Total: -2.91 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.27 Total: 0.03 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.89 Total: -47.96 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -1.28 Total: -8.33 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.39 -8.09 -38.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226732980.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.884 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds