Wall clock time and date at job start Fri Apr 10 2020 17:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99916 * 2 1 4 4 H 1.48506 * 109.47286 * 270.00474 * 3 2 1 5 5 H 1.48504 * 109.47288 * 30.00491 * 3 2 1 6 6 H 1.48497 * 109.47162 * 150.00274 * 3 2 1 7 7 C 1.37875 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00061 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00206 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47433 * 180.02562 * 9 7 2 11 11 C 1.47952 * 111.00141 * 170.00386 * 10 9 7 12 12 C 1.53933 * 86.18200 * 222.41562 * 11 10 9 13 13 O 1.42895 * 113.73766 * 138.07654 * 12 11 10 14 14 C 1.35522 * 117.00114 * 149.99829 * 13 12 11 15 15 N 1.32820 * 120.50853 * 0.02562 * 14 13 12 16 16 C 1.31774 * 120.71512 * 179.97438 * 15 14 13 17 17 N 1.31782 * 121.81583 * 0.02562 * 16 15 14 18 18 C 1.32495 * 120.96150 * 359.97438 * 17 16 15 19 19 C 1.38231 * 119.17836 * 359.97438 * 18 17 16 20 20 N 1.48003 * 120.82589 * 180.02562 * 19 18 17 21 21 O 1.21799 * 119.99945 * 0.02562 * 20 19 18 22 22 O 1.21794 * 120.00140 * 180.02562 * 20 19 18 23 23 C 1.47954 * 111.00201 * 70.64022 * 10 9 7 24 24 H 0.96999 * 120.00352 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46755 * 60.00216 * 9 7 2 26 26 H 1.09007 * 109.47353 * 300.00857 * 9 7 2 27 27 H 1.09001 * 113.76492 * 108.09412 * 11 10 9 28 28 H 1.09006 * 113.76251 * 336.73396 * 11 10 9 29 29 H 1.09002 * 113.73078 * 269.25718 * 12 11 10 30 30 H 1.08000 * 119.09035 * 179.97438 * 16 15 14 31 31 H 1.07999 * 120.40785 * 180.02562 * 18 17 16 32 32 H 1.09007 * 113.76014 * 23.26652 * 23 10 9 33 33 H 1.09008 * 113.76017 * 251.90297 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5163 -4.9026 0.2392 12 6 2.6929 -5.2412 1.1723 13 8 2.2971 -5.8746 2.3905 14 6 3.1807 -6.7352 2.9519 15 7 4.3565 -6.9641 2.3780 16 6 5.2189 -7.7997 2.9206 17 7 4.9558 -8.4381 4.0430 18 6 3.8040 -8.2615 4.6737 19 6 2.8700 -7.3930 4.1408 20 7 1.5720 -7.1679 4.8152 21 8 1.3160 -7.7511 5.8534 22 8 0.7598 -6.3996 4.3321 23 6 2.8983 -3.7212 1.3026 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 1.4576 -5.5405 -0.6427 28 1 0.5618 -4.8001 0.7555 29 1 3.5144 -5.7554 0.6735 30 1 6.1672 -7.9666 2.4314 31 1 3.5979 -8.7890 5.5933 32 1 2.3480 -3.2730 2.1300 33 1 3.9440 -3.4149 1.2703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228654034.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:18 Heat of formation + Delta-G solvation = 59.258417 kcal Electronic energy + Delta-G solvation = -21359.468026 eV Core-core repulsion = 17812.308494 eV Total energy + Delta-G solvation = -3547.159531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.60627 -41.48864 -39.96165 -37.79963 -36.55728 -34.13838 -33.13120 -32.70418 -29.38692 -27.38385 -26.06205 -25.71142 -24.51456 -23.87264 -21.90278 -19.92658 -19.74280 -19.24873 -18.96905 -17.82901 -17.77450 -16.60561 -16.18513 -16.12949 -15.53665 -14.70232 -14.54546 -14.53090 -14.22925 -13.25984 -13.03229 -12.46628 -12.27542 -12.08706 -11.71230 -11.65522 -11.41457 -11.18105 -11.09918 -11.01917 -10.86168 -10.68616 -10.42731 -10.20132 -9.87274 -9.73912 -9.26710 -8.56964 -8.02437 -6.11069 -4.14059 -0.63754 0.30271 0.97501 1.10090 2.17031 2.87296 3.15180 3.27685 3.31082 3.33762 3.36855 3.77995 3.92543 4.34951 4.48917 4.57532 4.60683 5.08456 5.24523 5.25434 5.55216 5.84334 5.89765 5.92254 6.05670 6.18248 6.21496 6.44547 6.74951 7.09397 7.14582 7.51058 7.51165 7.74380 7.97576 8.28978 8.92294 9.50837 11.00081 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024746 B = 0.003931 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.217227 B = 7121.553461 C = 7562.167555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.162 3.838 10 N -0.469 5.469 11 C 0.006 3.994 12 C 0.034 3.966 13 O -0.250 6.250 14 C 0.436 3.564 15 N -0.563 5.563 16 C 0.382 3.618 17 N -0.538 5.538 18 C 0.255 3.745 19 C -0.189 4.189 20 N 0.043 4.957 21 O -0.171 6.171 22 O -0.121 6.121 23 C 0.016 3.984 24 H 0.263 0.737 25 H 0.037 0.963 26 H 0.005 0.995 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.221 0.779 31 H 0.200 0.800 32 H 0.081 0.919 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.107 -17.695 7.256 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.036 3.964 10 N -0.194 5.194 11 C -0.122 4.122 12 C -0.021 4.021 13 O -0.148 6.148 14 C 0.247 3.753 15 N -0.295 5.295 16 C 0.096 3.904 17 N -0.258 5.258 18 C 0.088 3.912 19 C -0.280 4.280 20 N 0.563 4.437 21 O -0.381 6.381 22 O -0.343 6.343 23 C -0.113 4.113 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.023 0.977 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.144 0.856 30 H 0.237 0.763 31 H 0.217 0.783 32 H 0.099 0.901 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.447 -17.557 5.928 21.272 hybrid contribution -1.072 1.199 1.056 1.924 sum 9.375 -16.358 6.984 20.106 Atomic orbital electron populations 1.69948 1.06079 1.27036 1.50294 1.24983 0.94886 0.99417 0.95100 0.86469 0.79666 0.82914 0.78202 1.20506 1.21166 1.19871 1.21043 0.93415 0.89835 1.51120 0.91956 1.20264 0.90769 0.88182 0.97143 1.68667 1.21549 1.02039 1.27124 1.24291 0.96103 0.94968 0.96877 1.25545 1.01035 0.93989 0.81540 1.86738 1.37864 1.50136 1.40059 1.19919 0.86587 0.83333 0.85418 1.68588 1.02556 1.22765 1.35541 1.25427 0.96965 0.81750 0.86236 1.68880 1.18832 1.27085 1.11010 1.23303 0.84764 0.86305 0.96808 1.22311 0.92019 1.13410 1.00227 1.42965 1.01263 0.99361 1.00143 1.94529 1.82734 1.49555 1.11286 1.94694 1.41757 1.30480 1.67402 1.24206 1.01974 0.90457 0.94640 0.92713 0.94479 0.97742 0.89008 0.90111 0.85558 0.76312 0.78336 0.90116 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.33 8.84 -34.44 -0.30 -14.64 16 8 H 0.06 1.71 7.80 -52.48 -0.41 1.30 16 9 C 0.16 4.15 4.58 -4.98 -0.02 4.13 16 10 N -0.47 -9.80 6.25 -239.99 -1.50 -11.30 16 11 C 0.01 0.11 7.81 -2.77 -0.02 0.09 16 12 C 0.03 0.53 4.38 -25.80 -0.11 0.42 16 13 O -0.25 -3.83 8.33 -39.69 -0.33 -4.16 16 14 C 0.44 5.65 7.51 -16.70 -0.13 5.53 16 15 N -0.56 -6.10 8.76 -14.64 -0.13 -6.23 16 16 C 0.38 2.93 12.28 -92.18 -1.13 1.79 16 17 N -0.54 -4.43 10.43 -14.65 -0.15 -4.58 16 18 C 0.25 2.21 10.81 -17.27 -0.19 2.02 16 19 C -0.19 -2.25 6.91 -79.53 -0.55 -2.80 16 20 N 0.04 0.61 4.45 34.16 0.15 0.76 16 21 O -0.17 -2.33 18.55 -29.46 -0.55 -2.87 16 22 O -0.12 -2.01 17.40 -36.29 -0.63 -2.64 16 23 C 0.02 0.30 7.29 -2.77 -0.02 0.28 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.00 0.13 7.69 -51.93 -0.40 -0.27 16 27 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.08 1.44 7.79 -51.93 -0.40 1.04 16 29 H 0.13 1.76 6.91 -51.93 -0.36 1.40 16 30 H 0.22 0.73 8.06 -52.49 -0.42 0.30 16 31 H 0.20 1.15 7.70 -52.49 -0.40 0.75 16 32 H 0.08 1.63 7.78 -51.93 -0.40 1.23 16 33 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 LS Contribution 300.66 15.07 4.53 4.53 Total: -1.00 -31.78 300.66 -8.67 -40.45 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -3.21 Total: -3.12 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.57 Total: -1.63 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.89 Total: -46.99 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -1.51 Total: -9.68 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.78 -8.67 -40.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228654034.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.710 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds