Wall clock time and date at job start Fri Apr 10 2020 17:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99916 * 2 1 4 4 H 1.48506 * 109.47286 * 270.00474 * 3 2 1 5 5 H 1.48504 * 109.47288 * 30.00491 * 3 2 1 6 6 H 1.48497 * 109.47162 * 150.00274 * 3 2 1 7 7 C 1.37875 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00061 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00206 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47433 * 180.02562 * 9 7 2 11 11 C 1.47952 * 111.00141 * 170.00386 * 10 9 7 12 12 C 1.53933 * 86.18200 * 222.41562 * 11 10 9 13 13 O 1.42895 * 113.73766 * 138.07654 * 12 11 10 14 14 C 1.35522 * 117.00114 * 149.99829 * 13 12 11 15 15 N 1.32820 * 120.50853 * 0.02562 * 14 13 12 16 16 C 1.31774 * 120.71512 * 179.97438 * 15 14 13 17 17 N 1.31782 * 121.81583 * 0.02562 * 16 15 14 18 18 C 1.32495 * 120.96150 * 359.97438 * 17 16 15 19 19 C 1.38231 * 119.17836 * 359.97438 * 18 17 16 20 20 N 1.48003 * 120.82589 * 180.02562 * 19 18 17 21 21 O 1.21799 * 119.99945 * 0.02562 * 20 19 18 22 22 O 1.21794 * 120.00140 * 180.02562 * 20 19 18 23 23 C 1.47954 * 111.00201 * 70.64022 * 10 9 7 24 24 H 0.96999 * 120.00352 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46755 * 60.00216 * 9 7 2 26 26 H 1.09007 * 109.47353 * 300.00857 * 9 7 2 27 27 H 1.09001 * 113.76492 * 108.09412 * 11 10 9 28 28 H 1.09006 * 113.76251 * 336.73396 * 11 10 9 29 29 H 1.09002 * 113.73078 * 269.25718 * 12 11 10 30 30 H 1.08000 * 119.09035 * 179.97438 * 16 15 14 31 31 H 1.07999 * 120.40785 * 180.02562 * 18 17 16 32 32 H 1.09007 * 113.76014 * 23.26652 * 23 10 9 33 33 H 1.09008 * 113.76017 * 251.90297 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5163 -4.9026 0.2392 12 6 2.6929 -5.2412 1.1723 13 8 2.2971 -5.8746 2.3905 14 6 3.1807 -6.7352 2.9519 15 7 4.3565 -6.9641 2.3780 16 6 5.2189 -7.7997 2.9206 17 7 4.9558 -8.4381 4.0430 18 6 3.8040 -8.2615 4.6737 19 6 2.8700 -7.3930 4.1408 20 7 1.5720 -7.1679 4.8152 21 8 1.3160 -7.7511 5.8534 22 8 0.7598 -6.3996 4.3321 23 6 2.8983 -3.7212 1.3026 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 1.4576 -5.5405 -0.6427 28 1 0.5618 -4.8001 0.7555 29 1 3.5144 -5.7554 0.6735 30 1 6.1672 -7.9666 2.4314 31 1 3.5979 -8.7890 5.5933 32 1 2.3480 -3.2730 2.1300 33 1 3.9440 -3.4149 1.2703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228654034.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:18 Heat of formation + Delta-G solvation = 35.846014 kcal Electronic energy + Delta-G solvation = -21360.483264 eV Core-core repulsion = 17812.308494 eV Total energy + Delta-G solvation = -3548.174769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.57076 -42.45366 -41.24320 -39.08792 -37.65196 -35.10353 -34.92065 -33.77960 -31.21341 -28.29812 -27.67771 -27.14857 -25.80587 -24.78637 -23.58276 -21.29790 -20.80448 -20.25521 -20.04161 -18.85191 -18.77426 -18.56863 -17.30187 -17.11612 -16.99114 -16.30628 -15.92466 -15.72225 -15.08433 -14.75563 -14.37514 -13.97433 -13.86821 -13.63549 -13.31763 -12.88840 -12.77865 -12.63222 -12.32725 -12.32041 -12.29061 -12.09318 -11.93624 -11.67867 -11.28659 -11.01036 -10.86824 -10.68989 -9.81272 -8.27361 -6.38964 -1.52227 -0.52562 -0.01909 0.13686 1.16342 1.38551 1.40229 1.51161 2.11494 2.30494 2.36598 2.66798 2.90891 2.98911 3.06501 3.12214 3.19424 3.84163 3.98480 4.11452 4.39516 4.47851 4.57429 4.65937 4.73255 4.80275 4.98257 5.03698 5.18800 5.42367 5.61668 5.67823 5.97998 6.23709 6.35533 6.42417 6.75024 7.31219 8.84605 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024746 B = 0.003931 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.217227 B = 7121.553461 C = 7562.167555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.533 4.533 8 H 0.064 0.936 9 C 0.177 3.823 10 N -0.478 5.478 11 C 0.003 3.997 12 C 0.066 3.934 13 O -0.271 6.271 14 C 0.422 3.578 15 N -0.573 5.573 16 C 0.394 3.606 17 N -0.531 5.531 18 C 0.274 3.726 19 C -0.202 4.202 20 N 0.046 4.954 21 O -0.132 6.132 22 O -0.205 6.205 23 C 0.011 3.989 24 H 0.266 0.734 25 H 0.010 0.990 26 H -0.025 1.025 27 H 0.119 0.881 28 H 0.064 0.936 29 H 0.151 0.849 30 H 0.267 0.733 31 H 0.232 0.768 32 H 0.054 0.946 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.192 -19.321 7.857 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.571 4.571 8 H 0.082 0.918 9 C 0.050 3.950 10 N -0.202 5.202 11 C -0.125 4.125 12 C 0.011 3.989 13 O -0.171 6.171 14 C 0.233 3.767 15 N -0.305 5.305 16 C 0.111 3.889 17 N -0.250 5.250 18 C 0.107 3.893 19 C -0.293 4.293 20 N 0.561 4.439 21 O -0.356 6.356 22 O -0.407 6.407 23 C -0.118 4.118 24 H 0.075 0.925 25 H 0.028 0.972 26 H -0.008 1.008 27 H 0.137 0.863 28 H 0.083 0.917 29 H 0.168 0.832 30 H 0.282 0.718 31 H 0.248 0.752 32 H 0.073 0.927 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.501 -19.105 6.417 24.258 hybrid contribution -1.874 1.439 1.028 2.577 sum 11.627 -17.666 7.445 22.421 Atomic orbital electron populations 1.70080 1.07824 1.28165 1.51144 1.25947 0.95767 1.03397 0.94429 0.85341 0.78477 0.77946 0.78621 1.19534 1.20710 1.18794 1.21382 0.93631 0.90997 1.51057 0.91810 1.19897 0.90879 0.89826 0.94375 1.68526 1.20951 1.01983 1.28751 1.24338 0.96069 0.93512 0.98607 1.25070 1.00187 0.92118 0.81572 1.86707 1.39174 1.51233 1.39943 1.20113 0.87207 0.83384 0.85964 1.68656 1.02026 1.23906 1.35902 1.26412 0.97403 0.79535 0.85576 1.69054 1.18095 1.26739 1.11076 1.23889 0.83662 0.84569 0.97178 1.22498 0.91371 1.15063 1.00413 1.43268 1.01920 0.98724 1.00006 1.94468 1.82731 1.47639 1.10778 1.94727 1.43701 1.33476 1.68828 1.24176 1.01722 0.93336 0.92589 0.92483 0.97153 1.00768 0.86284 0.91737 0.83177 0.71778 0.75193 0.92722 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.53 -30.44 8.84 25.60 0.23 -30.21 16 8 H 0.06 3.54 7.80 -2.91 -0.02 3.52 16 9 C 0.18 9.57 4.58 85.56 0.39 9.96 16 10 N -0.48 -20.56 6.25 -916.41 -5.73 -26.29 16 11 C 0.00 0.12 7.81 86.41 0.67 0.79 16 12 C 0.07 2.03 4.38 31.24 0.14 2.17 16 13 O -0.27 -8.49 8.33 -67.76 -0.56 -9.06 16 14 C 0.42 10.47 7.51 84.82 0.64 11.11 16 15 N -0.57 -10.81 8.76 -312.89 -2.74 -13.55 16 16 C 0.39 4.37 12.28 180.89 2.22 6.59 16 17 N -0.53 -6.48 10.43 -200.25 -2.09 -8.57 16 18 C 0.27 3.81 10.81 84.59 0.91 4.72 16 19 C -0.20 -4.52 6.91 36.65 0.25 -4.26 16 20 N 0.05 1.30 4.45 -45.82 -0.20 1.10 16 21 O -0.13 -3.39 18.55 18.89 0.35 -3.04 16 22 O -0.20 -7.27 17.40 25.43 0.44 -6.83 16 23 C 0.01 0.41 7.29 86.41 0.63 1.04 16 24 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 25 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 26 H -0.03 -1.49 7.69 -2.38 -0.02 -1.51 16 27 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 28 H 0.06 2.48 7.79 -2.38 -0.02 2.46 16 29 H 0.15 3.88 6.91 -2.39 -0.02 3.87 16 30 H 0.27 0.26 8.06 -2.91 -0.02 0.23 16 31 H 0.23 1.63 7.70 -2.91 -0.02 1.61 16 32 H 0.05 2.36 7.78 -2.38 -0.02 2.34 16 33 H 0.10 3.51 8.14 -2.38 -0.02 3.49 16 Total: -1.00 -72.54 300.66 -0.52 -73.06 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: 1.15 Total: 0.66 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 6.55 Total: 2.56 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -10.48 Total: -103.72 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.23 Total: -18.93 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -72.54 -0.52 -73.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228654034.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.907 kcal (2) G-P(sol) polarization free energy of solvation -72.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds