Wall clock time and date at job start Fri Apr 10 2020 17:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00149 * 2 1 4 4 H 1.48501 * 109.47366 * 354.49616 * 3 2 1 5 5 H 1.48503 * 109.47638 * 234.49384 * 3 2 1 6 6 H 1.48506 * 109.46908 * 114.49581 * 3 2 1 7 7 C 1.38816 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00193 * 15.13759 * 7 2 1 9 9 N 1.36943 * 119.99574 * 195.14049 * 7 2 1 10 10 C 1.47016 * 125.64813 * 9.75120 * 9 7 2 11 11 C 1.54340 * 107.26417 * 178.85116 * 10 9 7 12 12 C 1.55157 * 103.01956 * 338.13484 * 11 10 9 13 13 H 1.09002 * 111.00451 * 277.24091 * 12 11 10 14 14 O 1.42896 * 111.03789 * 153.39676 * 12 11 10 15 15 C 1.35514 * 117.00107 * 156.32989 * 14 12 11 16 16 N 1.32825 * 120.51301 * 0.02562 * 15 14 12 17 17 C 1.31760 * 120.72050 * 180.02562 * 16 15 14 18 18 N 1.31789 * 121.81800 * 0.02562 * 17 16 15 19 19 C 1.32494 * 120.95992 * 359.97438 * 18 17 16 20 20 C 1.38233 * 119.17423 * 359.72374 * 19 18 17 21 21 N 1.48004 * 120.82485 * 180.27628 * 20 19 18 22 22 O 1.21802 * 119.99759 * 0.28848 * 21 20 19 23 23 O 1.21800 * 120.00118 * 180.28559 * 21 20 19 24 24 C 1.47425 * 125.64570 * 190.05525 * 9 7 2 25 25 H 0.97003 * 119.99982 * 182.97409 * 1 2 3 26 26 H 1.09008 * 109.88213 * 298.38949 * 10 9 7 27 27 H 1.08998 * 109.88564 * 59.55693 * 10 9 7 28 28 H 1.08999 * 110.84488 * 219.67274 * 11 10 9 29 29 H 1.08990 * 110.51836 * 96.44803 * 11 10 9 30 30 H 1.08005 * 119.09541 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.41308 * 179.97438 * 19 18 17 32 32 H 1.08997 * 110.36537 * 322.92788 * 24 9 7 33 33 H 1.08997 * 110.36694 * 85.25697 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2908 2.7432 -0.1343 5 1 3.2019 1.6399 -1.1397 6 1 3.0004 1.7560 1.2741 7 6 2.0102 -1.2022 -0.0005 8 1 1.4983 -2.1211 -0.2452 9 7 3.3439 -1.2229 0.3092 10 6 4.1150 -0.0952 0.8526 11 6 5.5606 -0.5907 1.0689 12 6 5.3925 -2.1305 1.1588 13 1 5.0989 -2.4335 2.1639 14 8 6.5871 -2.8015 0.7530 15 6 6.7781 -4.0573 1.2250 16 7 5.8814 -4.6198 2.0274 17 6 6.0632 -5.8404 2.4891 18 7 7.1305 -6.5487 2.1793 19 6 8.0687 -6.0554 1.3844 20 6 7.9159 -4.7807 0.8719 21 7 8.9384 -4.1960 -0.0244 22 8 9.9271 -4.8415 -0.3232 23 8 8.7911 -3.0694 -0.4632 24 6 4.2458 -2.3778 0.1471 25 1 -0.4850 -0.8389 0.0436 26 1 4.1073 0.7342 0.1453 27 1 3.6875 0.2221 1.8038 28 1 5.9722 -0.1929 1.9965 29 1 6.1882 -0.3202 0.2199 30 1 5.3169 -6.2725 3.1394 31 1 8.9400 -6.6434 1.1366 32 1 3.7228 -3.3039 0.3855 33 1 4.6378 -2.4133 -0.8693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228654675.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:23 Heat of formation + Delta-G solvation = 59.669901 kcal Electronic energy + Delta-G solvation = -21834.628829 eV Core-core repulsion = 18287.487141 eV Total energy + Delta-G solvation = -3547.141688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.100 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.63136 -41.50327 -39.54623 -37.17113 -36.58624 -34.14039 -33.16359 -32.38555 -29.79894 -28.48755 -27.39243 -25.33296 -23.90344 -23.79188 -21.37929 -20.70882 -19.79352 -19.30430 -19.08235 -17.97384 -17.81970 -17.51113 -16.36995 -16.11128 -15.52390 -15.01156 -14.53746 -14.26885 -13.92570 -13.62368 -12.98542 -12.68353 -12.44216 -12.42040 -11.70697 -11.62248 -11.43483 -11.24309 -11.23299 -11.14008 -10.95034 -10.77183 -10.23673 -10.10231 -9.86030 -9.45233 -9.09113 -8.80809 -7.19045 -6.41467 -3.33986 -0.64554 0.31241 0.95230 1.06817 2.12315 2.88884 3.16277 3.32614 3.33727 3.44528 3.64588 3.76794 3.91831 4.53679 4.58665 4.69999 4.84819 5.04883 5.16127 5.26182 5.39276 5.57810 5.71292 5.91247 5.97324 6.02063 6.17572 6.25510 6.29746 6.56948 6.75511 7.16458 7.47565 7.50092 8.22247 8.92645 9.42308 10.07603 11.09692 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.028031 B = 0.004680 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.656389 B = 5981.372600 C = 6633.121142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.018 4.018 3 Si 1.069 2.931 4 H -0.299 1.299 5 H -0.295 1.295 6 H -0.285 1.285 7 C -0.328 4.328 8 H 0.080 0.920 9 N -0.606 5.606 10 C 0.111 3.889 11 C -0.122 4.122 12 C 0.061 3.939 13 H 0.107 0.893 14 O -0.250 6.250 15 C 0.437 3.563 16 N -0.558 5.558 17 C 0.383 3.617 18 N -0.537 5.537 19 C 0.254 3.746 20 C -0.188 4.188 21 N 0.044 4.956 22 O -0.172 6.172 23 O -0.124 6.124 24 C 0.127 3.873 25 H 0.262 0.738 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.221 0.779 31 H 0.200 0.800 32 H 0.053 0.947 33 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.469 -10.921 6.019 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.218 4.218 3 Si 0.903 3.097 4 H -0.227 1.227 5 H -0.224 1.224 6 H -0.212 1.212 7 C -0.454 4.454 8 H 0.097 0.903 9 N -0.335 5.335 10 C -0.013 4.013 11 C -0.159 4.159 12 C 0.005 3.995 13 H 0.125 0.875 14 O -0.148 6.148 15 C 0.248 3.752 16 N -0.289 5.289 17 C 0.098 3.902 18 N -0.257 5.257 19 C 0.088 3.912 20 C -0.279 4.279 21 N 0.564 4.436 22 O -0.381 6.381 23 O -0.346 6.346 24 C 0.000 4.000 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.237 0.763 31 H 0.217 0.783 32 H 0.071 0.929 33 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 15.136 -9.690 6.766 19.204 hybrid contribution 0.832 -1.287 -0.678 1.676 sum 15.968 -10.977 6.088 20.311 Atomic orbital electron populations 1.70911 1.05645 1.29217 1.50658 1.25862 0.96452 1.00954 0.98555 0.83862 0.73340 0.76102 0.76411 1.22697 1.22398 1.21197 1.20153 0.81486 0.96333 1.47454 0.90254 1.44657 1.06180 1.07197 1.75468 1.22075 0.89021 0.92216 0.98030 1.22765 0.98796 0.91114 1.03272 1.24229 0.81762 0.92581 1.00900 0.87543 1.86565 1.43598 1.20550 1.64113 1.19869 0.85728 0.86108 0.83503 1.68684 1.29829 1.15311 1.15112 1.25462 0.91848 0.83948 0.88964 1.68893 1.03539 1.36638 1.16601 1.23304 0.96340 0.87797 0.83798 1.22281 0.95335 0.99787 1.10537 1.42954 1.00431 1.00801 0.99416 1.94531 1.18949 1.61683 1.62958 1.94666 1.82854 1.03018 1.54108 1.21830 0.89799 0.92908 0.95488 0.92754 0.94358 0.92791 0.90097 0.89515 0.76254 0.78307 0.92851 0.94889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.61 13.71 55.49 0.76 -27.85 16 2 C -0.02 -0.53 5.50 -17.43 -0.10 -0.63 16 3 Si 1.07 26.19 24.52 -169.99 -4.17 22.02 16 4 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 5 H -0.30 -7.02 6.82 56.52 0.39 -6.63 16 6 H -0.28 -6.25 5.41 56.52 0.31 -5.95 16 7 C -0.33 -9.25 10.56 -15.05 -0.16 -9.41 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 9 N -0.61 -14.59 3.33 -170.06 -0.57 -15.16 16 10 C 0.11 2.33 4.61 -3.06 -0.01 2.32 16 11 C -0.12 -1.99 6.69 -24.89 -0.17 -2.15 16 12 C 0.06 1.01 3.24 -24.58 -0.08 0.93 16 13 H 0.11 1.68 7.20 -51.93 -0.37 1.31 16 14 O -0.25 -3.86 8.12 -39.67 -0.32 -4.18 16 15 C 0.44 5.86 7.51 -16.70 -0.13 5.73 16 16 N -0.56 -6.70 8.89 -14.64 -0.13 -6.83 16 17 C 0.38 3.33 12.28 -92.19 -1.13 2.19 16 18 N -0.54 -4.72 10.43 -14.65 -0.15 -4.87 16 19 C 0.25 2.27 10.81 -17.27 -0.19 2.08 16 20 C -0.19 -2.26 6.91 -79.53 -0.55 -2.81 16 21 N 0.04 0.61 4.45 34.17 0.15 0.77 16 22 O -0.17 -2.25 18.55 -29.46 -0.55 -2.80 16 23 O -0.12 -1.96 17.40 -36.29 -0.63 -2.59 16 24 C 0.13 2.54 6.97 -2.53 -0.02 2.52 16 25 H 0.26 8.03 8.73 -40.82 -0.36 7.67 16 26 H 0.04 0.85 3.89 -51.92 -0.20 0.65 16 27 H 0.05 1.15 6.70 -51.93 -0.35 0.81 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.22 1.03 8.06 -52.48 -0.42 0.60 16 31 H 0.20 1.17 7.70 -52.49 -0.40 0.76 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 286.72 15.07 4.32 4.32 Total: -1.00 -32.86 286.72 -6.94 -39.80 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -3.13 Total: -3.40 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -2.53 Total: 0.78 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.06 Total: -53.95 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -1.50 Total: -9.57 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -4.17 Total: 22.02 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.86 -6.94 -39.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228654675.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.467 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds