Wall clock time and date at job start Fri Apr 10 2020 17:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00149 * 2 1 4 4 H 1.48501 * 109.47366 * 354.49616 * 3 2 1 5 5 H 1.48503 * 109.47638 * 234.49384 * 3 2 1 6 6 H 1.48506 * 109.46908 * 114.49581 * 3 2 1 7 7 C 1.38816 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00193 * 15.13759 * 7 2 1 9 9 N 1.36943 * 119.99574 * 195.14049 * 7 2 1 10 10 C 1.47016 * 125.64813 * 9.75120 * 9 7 2 11 11 C 1.54340 * 107.26417 * 178.85116 * 10 9 7 12 12 C 1.55157 * 103.01956 * 338.13484 * 11 10 9 13 13 H 1.09002 * 111.00451 * 277.24091 * 12 11 10 14 14 O 1.42896 * 111.03789 * 153.39676 * 12 11 10 15 15 C 1.35514 * 117.00107 * 156.32989 * 14 12 11 16 16 N 1.32825 * 120.51301 * 0.02562 * 15 14 12 17 17 C 1.31760 * 120.72050 * 180.02562 * 16 15 14 18 18 N 1.31789 * 121.81800 * 0.02562 * 17 16 15 19 19 C 1.32494 * 120.95992 * 359.97438 * 18 17 16 20 20 C 1.38233 * 119.17423 * 359.72374 * 19 18 17 21 21 N 1.48004 * 120.82485 * 180.27628 * 20 19 18 22 22 O 1.21802 * 119.99759 * 0.28848 * 21 20 19 23 23 O 1.21800 * 120.00118 * 180.28559 * 21 20 19 24 24 C 1.47425 * 125.64570 * 190.05525 * 9 7 2 25 25 H 0.97003 * 119.99982 * 182.97409 * 1 2 3 26 26 H 1.09008 * 109.88213 * 298.38949 * 10 9 7 27 27 H 1.08998 * 109.88564 * 59.55693 * 10 9 7 28 28 H 1.08999 * 110.84488 * 219.67274 * 11 10 9 29 29 H 1.08990 * 110.51836 * 96.44803 * 11 10 9 30 30 H 1.08005 * 119.09541 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.41308 * 179.97438 * 19 18 17 32 32 H 1.08997 * 110.36537 * 322.92788 * 24 9 7 33 33 H 1.08997 * 110.36694 * 85.25697 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2908 2.7432 -0.1343 5 1 3.2019 1.6399 -1.1397 6 1 3.0004 1.7560 1.2741 7 6 2.0102 -1.2022 -0.0005 8 1 1.4983 -2.1211 -0.2452 9 7 3.3439 -1.2229 0.3092 10 6 4.1150 -0.0952 0.8526 11 6 5.5606 -0.5907 1.0689 12 6 5.3925 -2.1305 1.1588 13 1 5.0989 -2.4335 2.1639 14 8 6.5871 -2.8015 0.7530 15 6 6.7781 -4.0573 1.2250 16 7 5.8814 -4.6198 2.0274 17 6 6.0632 -5.8404 2.4891 18 7 7.1305 -6.5487 2.1793 19 6 8.0687 -6.0554 1.3844 20 6 7.9159 -4.7807 0.8719 21 7 8.9384 -4.1960 -0.0244 22 8 9.9271 -4.8415 -0.3232 23 8 8.7911 -3.0694 -0.4632 24 6 4.2458 -2.3778 0.1471 25 1 -0.4850 -0.8389 0.0436 26 1 4.1073 0.7342 0.1453 27 1 3.6875 0.2221 1.8038 28 1 5.9722 -0.1929 1.9965 29 1 6.1882 -0.3202 0.2199 30 1 5.3169 -6.2725 3.1394 31 1 8.9400 -6.6434 1.1366 32 1 3.7228 -3.3039 0.3855 33 1 4.6378 -2.4133 -0.8693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228654675.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:23 Heat of formation + Delta-G solvation = 36.497981 kcal Electronic energy + Delta-G solvation = -21835.633639 eV Core-core repulsion = 18287.487141 eV Total energy + Delta-G solvation = -3548.146498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.58517 -42.45060 -40.71917 -38.66594 -37.65134 -35.01990 -34.75399 -33.76622 -31.53947 -30.03481 -28.30343 -26.62615 -25.35032 -24.80668 -22.86699 -22.35281 -20.79460 -20.28546 -20.15008 -19.68558 -18.82948 -18.76699 -17.52355 -17.23969 -16.90778 -16.30612 -15.71072 -15.65403 -15.24162 -15.03691 -14.45700 -14.25077 -13.93343 -13.58327 -13.28124 -13.14280 -12.76643 -12.45456 -12.42241 -12.30928 -12.11628 -12.01679 -11.79787 -11.49776 -11.11622 -11.04718 -10.94900 -10.73756 -9.22226 -8.71957 -5.56239 -1.53150 -0.54035 -0.01742 0.11716 1.08394 1.39111 1.50556 1.72016 2.08943 2.28923 2.51881 2.62496 2.85704 3.02854 3.11256 3.24356 3.35609 3.58163 3.86571 4.00825 4.14506 4.28032 4.53034 4.56278 4.65799 4.71834 4.77655 5.00439 5.03522 5.18041 5.41234 5.58320 6.01293 6.36244 6.42294 6.73149 7.31487 7.96626 8.81325 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.028031 B = 0.004680 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.656389 B = 5981.372600 C = 6633.121142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.073 4.073 3 Si 1.105 2.895 4 H -0.310 1.310 5 H -0.286 1.286 6 H -0.240 1.240 7 C -0.319 4.319 8 H 0.046 0.954 9 N -0.626 5.626 10 C 0.100 3.900 11 C -0.111 4.111 12 C 0.082 3.918 13 H 0.115 0.885 14 O -0.261 6.261 15 C 0.421 3.579 16 N -0.578 5.578 17 C 0.392 3.608 18 N -0.530 5.530 19 C 0.272 3.728 20 C -0.198 4.198 21 N 0.046 4.954 22 O -0.140 6.140 23 O -0.187 6.187 24 C 0.125 3.875 25 H 0.248 0.752 26 H 0.036 0.964 27 H 0.054 0.946 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.260 0.740 31 H 0.234 0.766 32 H 0.045 0.955 33 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.175 -11.957 7.635 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.266 4.266 3 Si 0.932 3.068 4 H -0.239 1.239 5 H -0.214 1.214 6 H -0.165 1.165 7 C -0.447 4.447 8 H 0.064 0.936 9 N -0.355 5.355 10 C -0.024 4.024 11 C -0.148 4.148 12 C 0.025 3.975 13 H 0.133 0.867 14 O -0.160 6.160 15 C 0.233 3.767 16 N -0.310 5.310 17 C 0.108 3.892 18 N -0.249 5.249 19 C 0.105 3.895 20 C -0.289 4.289 21 N 0.562 4.438 22 O -0.361 6.361 23 O -0.394 6.394 24 C -0.001 4.001 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.136 0.864 29 H 0.112 0.888 30 H 0.275 0.725 31 H 0.250 0.750 32 H 0.064 0.936 33 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 17.831 -10.668 8.392 22.410 hybrid contribution 0.052 -1.337 -1.160 1.771 sum 17.883 -12.005 7.232 22.721 Atomic orbital electron populations 1.71016 1.06949 1.28447 1.53818 1.27165 0.96433 1.04507 0.98525 0.83472 0.72663 0.71794 0.78836 1.23919 1.21367 1.16476 1.20027 0.83712 0.95060 1.45909 0.93563 1.44683 1.05458 1.09678 1.75727 1.22243 0.91386 0.91318 0.97427 1.22737 0.95799 0.90768 1.05536 1.23804 0.81032 0.93000 0.99620 0.86702 1.86553 1.42613 1.21919 1.64965 1.20080 0.86681 0.85687 0.84286 1.68736 1.29845 1.16824 1.15553 1.26293 0.92223 0.82694 0.87971 1.69052 1.03474 1.36117 1.16239 1.23914 0.96948 0.86454 0.82179 1.22429 0.94704 1.00687 1.11061 1.43169 1.00667 1.00568 0.99356 1.94489 1.18848 1.61032 1.61684 1.94684 1.83884 1.04216 1.56652 1.21876 0.90613 0.91324 0.96335 0.94251 0.94719 0.92773 0.86357 0.88819 0.72478 0.74992 0.93649 0.95812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.41 13.71 21.65 0.30 -61.11 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 1.11 52.51 24.52 68.60 1.68 54.19 16 4 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 5 H -0.29 -13.00 6.82 99.48 0.68 -12.32 16 6 H -0.24 -9.67 5.41 99.48 0.54 -9.13 16 7 C -0.32 -18.52 10.56 84.03 0.89 -17.63 16 8 H 0.05 2.91 8.06 -2.91 -0.02 2.88 16 9 N -0.63 -30.14 3.33 -691.96 -2.30 -32.44 16 10 C 0.10 4.00 4.61 86.74 0.40 4.40 16 11 C -0.11 -3.32 6.69 31.79 0.21 -3.11 16 12 C 0.08 2.56 3.24 31.99 0.10 2.67 16 13 H 0.12 3.40 7.20 -2.39 -0.02 3.38 16 14 O -0.26 -7.76 8.12 -67.68 -0.55 -8.31 16 15 C 0.42 10.60 7.51 84.82 0.64 11.24 16 16 N -0.58 -12.57 8.89 -312.90 -2.78 -15.35 16 17 C 0.39 5.49 12.28 180.90 2.22 7.71 16 18 N -0.53 -7.32 10.43 -200.25 -2.09 -9.41 16 19 C 0.27 3.87 10.81 84.59 0.91 4.79 16 20 C -0.20 -4.30 6.91 36.65 0.25 -4.05 16 21 N 0.05 1.21 4.45 -45.82 -0.20 1.01 16 22 O -0.14 -3.32 18.55 18.88 0.35 -2.97 16 23 O -0.19 -5.89 17.40 25.42 0.44 -5.45 16 24 C 0.12 5.00 6.97 86.86 0.61 5.61 16 25 H 0.25 15.98 8.73 -92.71 -0.81 15.17 16 26 H 0.04 1.45 3.89 -2.38 -0.01 1.44 16 27 H 0.05 2.17 6.70 -2.39 -0.02 2.15 16 28 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.26 1.34 8.06 -2.91 -0.02 1.31 16 31 H 0.23 1.64 7.70 -2.91 -0.02 1.62 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -74.36 286.72 2.47 -71.89 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: 0.92 Total: 0.18 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 6.70 Total: 7.76 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -7.08 Total: -117.30 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.24 Total: -16.72 kcal Atomic # 14 Polarization: 52.51 SS G_CDS: 1.68 Total: 54.19 kcal Total: -74.36 2.47 -71.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228654675.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.390 kcal (2) G-P(sol) polarization free energy of solvation -74.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds