Wall clock time and date at job start Fri Apr 10 2020 17:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86796 * 119.99710 * 2 1 4 4 H 1.48509 * 109.47023 * 275.30627 * 3 2 1 5 5 H 1.48499 * 109.47316 * 35.30503 * 3 2 1 6 6 H 1.48498 * 109.47269 * 155.31039 * 3 2 1 7 7 C 1.39933 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00347 * 344.09380 * 7 2 1 9 9 C 1.41157 * 119.99453 * 164.09897 * 7 2 1 10 10 C 1.40719 * 120.29079 * 331.92663 * 9 7 2 11 11 C 1.36502 * 119.92780 * 180.32444 * 10 9 7 12 12 C 1.38813 * 120.53485 * 359.67886 * 11 10 9 13 13 C 1.38317 * 120.59420 * 0.02562 * 12 11 10 14 14 C 1.38447 * 120.04754 * 359.97438 * 13 12 11 15 15 O 1.35644 * 120.25935 * 180.02562 * 14 13 12 16 16 C 1.42901 * 117.00338 * 5.35394 * 15 14 13 17 17 H 1.08996 * 109.46929 * 35.27928 * 16 15 14 18 18 C 1.52998 * 109.46738 * 275.28462 * 16 15 14 19 19 C 1.53004 * 109.47003 * 179.97438 * 18 16 15 20 20 C 1.52996 * 109.47058 * 60.00043 * 19 18 16 21 21 C 1.53003 * 109.46914 * 300.00040 * 20 19 18 22 22 C 1.52995 * 109.47202 * 60.00251 * 21 20 19 23 23 H 1.08994 * 109.47510 * 60.00251 * 22 21 20 24 24 Cl 1.80305 * 109.47162 * 180.02562 * 22 21 20 25 25 H 0.96994 * 120.00180 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.04139 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.73232 * 179.70129 * 11 10 9 28 28 H 1.08001 * 119.70633 * 180.02562 * 12 11 10 29 29 H 1.07996 * 119.97014 * 180.02562 * 13 12 11 30 30 H 1.09005 * 109.47405 * 299.99786 * 18 16 15 31 31 H 1.09003 * 109.47743 * 59.99891 * 18 16 15 32 32 H 1.08994 * 109.47345 * 299.99554 * 19 18 16 33 33 H 1.09004 * 109.46824 * 179.97438 * 19 18 16 34 34 H 1.09000 * 109.47333 * 180.02562 * 20 19 18 35 35 H 1.09006 * 109.47655 * 60.00004 * 20 19 18 36 36 H 1.09004 * 109.47113 * 299.99647 * 21 20 19 37 37 H 1.09008 * 109.47096 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3780 2.1112 -1.3942 5 1 1.5006 2.6177 0.8091 6 1 3.5918 1.4105 0.5848 7 6 2.0084 -1.2119 -0.0005 8 1 1.4995 -2.1293 0.2554 9 6 3.3794 -1.2350 -0.3355 10 6 3.9153 -0.2628 -1.2003 11 6 5.2409 -0.2961 -1.5245 12 6 6.0701 -1.2793 -1.0024 13 6 5.5678 -2.2420 -0.1456 14 6 4.2270 -2.2312 0.1996 15 8 3.7299 -3.1728 1.0398 16 6 4.6668 -4.0782 1.6269 17 1 5.6018 -3.5547 1.8264 18 6 4.9272 -5.2381 0.6637 19 6 5.9308 -6.2071 1.2920 20 6 5.3617 -6.7514 2.6037 21 6 5.1012 -5.5914 3.5668 22 6 4.0977 -4.6225 2.9386 23 1 3.1627 -5.1461 2.7395 24 17 3.7913 -3.2551 4.0733 25 1 -0.4850 0.8400 0.0004 26 1 3.2776 0.5060 -1.6109 27 1 5.6478 0.4487 -2.1923 28 1 7.1170 -1.2928 -1.2675 29 1 6.2221 -3.0020 0.2550 30 1 3.9922 -5.7616 0.4642 31 1 5.3331 -4.8504 -0.2707 32 1 6.8658 -5.6835 1.4911 33 1 6.1160 -7.0337 0.6060 34 1 6.0768 -7.4414 3.0515 35 1 4.4267 -7.2752 2.4046 36 1 6.0362 -5.0677 3.7661 37 1 4.6961 -5.9792 4.5016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276129.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:36 Heat of formation + Delta-G solvation = -47.083012 kcal Electronic energy + Delta-G solvation = -20085.767651 eV Core-core repulsion = 17045.953567 eV Total energy + Delta-G solvation = -3039.814085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.62665 -37.77110 -35.83656 -35.33967 -33.53993 -30.77714 -30.46875 -29.77602 -28.52287 -24.97911 -22.96403 -22.66048 -21.21538 -20.41869 -19.82803 -17.46059 -17.13769 -15.93726 -15.19188 -14.87580 -14.68294 -14.23974 -13.95735 -13.82032 -13.75068 -13.07530 -12.74510 -12.62376 -12.41540 -12.15989 -11.84637 -11.54310 -11.29943 -11.13688 -10.97982 -10.75133 -10.67967 -10.61058 -10.38392 -10.08099 -10.02139 -9.77518 -9.63150 -9.53546 -9.08388 -7.68025 -7.13330 -6.86709 -4.31121 2.47254 2.59868 2.68836 3.15044 3.27263 3.37964 3.87756 4.04411 4.53806 4.55707 4.78563 4.81711 5.00972 5.11342 5.20820 5.28656 5.32782 5.45367 5.60667 5.74150 5.84221 5.90356 5.91895 5.97365 5.99648 6.06800 6.19214 6.26241 6.37502 6.60487 6.84814 7.00665 7.20050 7.53385 7.61709 7.83378 8.06551 8.26509 8.46940 8.84626 8.88267 10.15737 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.006399 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.122393 B = 4374.347759 C = 5151.217449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.081 3.919 3 Si 0.911 3.089 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.242 1.242 7 C -0.422 4.422 8 H 0.095 0.905 9 C 0.080 3.920 10 C -0.224 4.224 11 C -0.101 4.101 12 C -0.218 4.218 13 C -0.171 4.171 14 C 0.033 3.967 15 O -0.289 6.289 16 C 0.086 3.914 17 H 0.074 0.926 18 C -0.145 4.145 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.120 4.120 22 C 0.006 3.994 23 H 0.104 0.896 24 Cl -0.171 7.171 25 H 0.284 0.716 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.398 -9.799 4.611 14.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.137 4.137 3 Si 0.738 3.262 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.166 1.166 7 C -0.451 4.451 8 H 0.113 0.887 9 C 0.077 3.923 10 C -0.244 4.244 11 C -0.120 4.120 12 C -0.238 4.238 13 C -0.190 4.190 14 C -0.011 4.011 15 O -0.203 6.203 16 C 0.028 3.972 17 H 0.092 0.908 18 C -0.183 4.183 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.038 4.038 23 H 0.122 0.878 24 Cl -0.144 7.144 25 H 0.094 0.906 26 H 0.121 0.879 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.872 -9.634 4.779 13.942 hybrid contribution 0.430 0.849 -0.045 0.952 sum 9.302 -8.785 4.734 13.643 Atomic orbital electron populations 1.69693 1.07988 1.30068 1.35661 1.26158 0.94780 1.01562 0.91187 0.86332 0.81419 0.79884 0.78546 1.19867 1.22106 1.16570 1.19338 0.91959 0.95973 1.37804 0.88724 1.17138 0.93009 0.90271 0.91902 1.20489 0.95585 1.03468 1.04819 1.20245 0.93984 0.97953 0.99783 1.20099 0.97951 0.99753 1.06005 1.20715 0.94121 1.01261 1.02909 1.18984 0.91589 0.94011 0.96516 1.86064 1.33607 1.41653 1.58963 1.22312 0.93412 0.90543 0.90932 0.90796 1.22147 1.00344 0.96326 0.99495 1.21551 0.98671 0.98887 0.96597 1.21589 1.01605 0.97097 0.95459 1.21881 0.99142 0.95698 0.99011 1.24125 1.01549 0.88567 0.89519 0.87766 1.98732 1.96905 1.52706 1.66106 0.90559 0.87919 0.88960 0.88921 0.88151 0.90788 0.90209 0.91697 0.91347 0.91146 0.91408 0.90641 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.21 13.93 55.55 0.77 -21.43 16 2 C 0.08 2.20 5.44 -17.32 -0.09 2.11 16 3 Si 0.91 21.57 24.40 -169.99 -4.15 17.42 16 4 H -0.27 -6.18 6.72 56.52 0.38 -5.81 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.91 6.65 56.52 0.38 -5.54 16 7 C -0.42 -11.83 9.23 -37.84 -0.35 -12.18 16 8 H 0.09 2.83 7.87 -52.49 -0.41 2.42 16 9 C 0.08 2.10 5.19 -106.68 -0.55 1.54 16 10 C -0.22 -5.54 6.98 -39.27 -0.27 -5.81 16 11 C -0.10 -2.25 9.97 -40.00 -0.40 -2.64 16 12 C -0.22 -4.59 10.04 -39.34 -0.39 -4.99 16 13 C -0.17 -3.61 8.24 -39.48 -0.33 -3.94 16 14 C 0.03 0.79 6.63 -38.34 -0.25 0.53 16 15 O -0.29 -6.32 8.83 -18.63 -0.16 -6.48 16 16 C 0.09 1.41 1.62 -26.73 -0.04 1.36 16 17 H 0.07 1.23 6.33 -51.93 -0.33 0.90 16 18 C -0.15 -1.99 5.18 -26.73 -0.14 -2.12 16 19 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 20 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 21 C -0.12 -1.25 5.33 -26.73 -0.14 -1.40 16 22 C 0.01 0.09 2.93 -26.74 -0.08 0.01 16 23 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 24 Cl -0.17 -2.90 28.33 -51.86 -1.47 -4.37 16 25 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 26 H 0.10 2.52 4.31 -52.49 -0.23 2.30 16 27 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.10 1.82 5.43 -52.49 -0.29 1.54 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.19 6.90 -51.93 -0.36 0.83 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 LS Contribution 304.98 15.07 4.60 4.60 Total: -1.00 -28.93 304.98 -8.80 -37.73 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.02 Total: 2.67 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: -3.36 Total: -30.13 kcal Atomic # 7 Polarization: -22.21 SS G_CDS: 0.77 Total: -21.43 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.16 Total: -6.48 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.15 Total: 17.42 kcal Atomic # 17 Polarization: -2.90 SS G_CDS: -1.47 Total: -4.37 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.93 -8.80 -37.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276129.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.357 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds