Wall clock time and date at job start Fri Apr 10 2020 17:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86796 * 119.99710 * 2 1 4 4 H 1.48509 * 109.47023 * 275.30627 * 3 2 1 5 5 H 1.48499 * 109.47316 * 35.30503 * 3 2 1 6 6 H 1.48498 * 109.47269 * 155.31039 * 3 2 1 7 7 C 1.39933 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00347 * 344.09380 * 7 2 1 9 9 C 1.41157 * 119.99453 * 164.09897 * 7 2 1 10 10 C 1.40719 * 120.29079 * 331.92663 * 9 7 2 11 11 C 1.36502 * 119.92780 * 180.32444 * 10 9 7 12 12 C 1.38813 * 120.53485 * 359.67886 * 11 10 9 13 13 C 1.38317 * 120.59420 * 0.02562 * 12 11 10 14 14 C 1.38447 * 120.04754 * 359.97438 * 13 12 11 15 15 O 1.35644 * 120.25935 * 180.02562 * 14 13 12 16 16 C 1.42901 * 117.00338 * 5.35394 * 15 14 13 17 17 H 1.08996 * 109.46929 * 35.27928 * 16 15 14 18 18 C 1.52998 * 109.46738 * 275.28462 * 16 15 14 19 19 C 1.53004 * 109.47003 * 179.97438 * 18 16 15 20 20 C 1.52996 * 109.47058 * 60.00043 * 19 18 16 21 21 C 1.53003 * 109.46914 * 300.00040 * 20 19 18 22 22 C 1.52995 * 109.47202 * 60.00251 * 21 20 19 23 23 H 1.08994 * 109.47510 * 60.00251 * 22 21 20 24 24 Cl 1.80305 * 109.47162 * 180.02562 * 22 21 20 25 25 H 0.96994 * 120.00180 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.04139 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.73232 * 179.70129 * 11 10 9 28 28 H 1.08001 * 119.70633 * 180.02562 * 12 11 10 29 29 H 1.07996 * 119.97014 * 180.02562 * 13 12 11 30 30 H 1.09005 * 109.47405 * 299.99786 * 18 16 15 31 31 H 1.09003 * 109.47743 * 59.99891 * 18 16 15 32 32 H 1.08994 * 109.47345 * 299.99554 * 19 18 16 33 33 H 1.09004 * 109.46824 * 179.97438 * 19 18 16 34 34 H 1.09000 * 109.47333 * 180.02562 * 20 19 18 35 35 H 1.09006 * 109.47655 * 60.00004 * 20 19 18 36 36 H 1.09004 * 109.47113 * 299.99647 * 21 20 19 37 37 H 1.09008 * 109.47096 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3780 2.1112 -1.3942 5 1 1.5006 2.6177 0.8091 6 1 3.5918 1.4105 0.5848 7 6 2.0084 -1.2119 -0.0005 8 1 1.4995 -2.1293 0.2554 9 6 3.3794 -1.2350 -0.3355 10 6 3.9153 -0.2628 -1.2003 11 6 5.2409 -0.2961 -1.5245 12 6 6.0701 -1.2793 -1.0024 13 6 5.5678 -2.2420 -0.1456 14 6 4.2270 -2.2312 0.1996 15 8 3.7299 -3.1728 1.0398 16 6 4.6668 -4.0782 1.6269 17 1 5.6018 -3.5547 1.8264 18 6 4.9272 -5.2381 0.6637 19 6 5.9308 -6.2071 1.2920 20 6 5.3617 -6.7514 2.6037 21 6 5.1012 -5.5914 3.5668 22 6 4.0977 -4.6225 2.9386 23 1 3.1627 -5.1461 2.7395 24 17 3.7913 -3.2551 4.0733 25 1 -0.4850 0.8400 0.0004 26 1 3.2776 0.5060 -1.6109 27 1 5.6478 0.4487 -2.1923 28 1 7.1170 -1.2928 -1.2675 29 1 6.2221 -3.0020 0.2550 30 1 3.9922 -5.7616 0.4642 31 1 5.3331 -4.8504 -0.2707 32 1 6.8658 -5.6835 1.4911 33 1 6.1160 -7.0337 0.6060 34 1 6.0768 -7.4414 3.0515 35 1 4.4267 -7.2752 2.4046 36 1 6.0362 -5.0677 3.7661 37 1 4.6961 -5.9792 4.5016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276129.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:15:36 Heat of formation + Delta-G solvation = -62.762150 kcal Electronic energy + Delta-G solvation = -20086.447550 eV Core-core repulsion = 17045.953567 eV Total energy + Delta-G solvation = -3040.493983 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.10830 -39.21563 -37.36070 -36.55554 -35.47992 -32.46580 -31.57346 -31.17289 -30.09212 -26.89676 -24.32614 -23.72513 -22.69712 -22.10682 -20.92583 -19.36007 -18.79616 -17.41751 -16.73221 -16.33636 -15.96033 -15.67933 -15.55339 -15.30563 -15.02192 -14.49910 -14.17000 -14.00931 -13.79613 -13.62979 -13.54756 -12.92565 -12.74500 -12.59280 -12.50286 -12.25261 -11.92297 -11.82049 -11.63596 -11.59222 -11.49393 -11.34614 -11.19330 -10.98890 -10.89353 -9.54017 -8.91540 -8.85025 -6.34829 0.75589 0.87320 1.23528 1.27891 1.40014 1.47475 2.12281 2.48413 2.64192 3.46455 3.50156 3.79662 3.83409 3.96388 4.10506 4.12591 4.23082 4.28456 4.36408 4.39853 4.54701 4.73326 4.77721 4.81690 4.94907 5.05587 5.07370 5.10924 5.19194 5.24397 5.25891 5.31026 5.43622 5.74161 5.77252 5.99444 6.21026 6.36272 6.49824 6.82402 7.10917 8.24371 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.006399 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.122393 B = 4374.347759 C = 5151.217449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.041 3.959 3 Si 0.965 3.035 4 H -0.255 1.255 5 H -0.283 1.283 6 H -0.254 1.254 7 C -0.460 4.460 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.230 4.230 11 C -0.115 4.115 12 C -0.192 4.192 13 C -0.173 4.173 14 C 0.030 3.970 15 O -0.318 6.318 16 C 0.078 3.922 17 H 0.075 0.925 18 C -0.140 4.140 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.112 4.112 22 C 0.009 3.991 23 H 0.098 0.902 24 Cl -0.201 7.201 25 H 0.291 0.709 26 H 0.099 0.901 27 H 0.127 0.873 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.337 -10.676 4.405 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.171 4.171 3 Si 0.790 3.210 4 H -0.180 1.180 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.490 4.490 8 H 0.068 0.932 9 C 0.042 3.958 10 C -0.249 4.249 11 C -0.134 4.134 12 C -0.211 4.211 13 C -0.192 4.192 14 C -0.015 4.015 15 O -0.233 6.233 16 C 0.021 3.979 17 H 0.093 0.907 18 C -0.178 4.178 19 C -0.150 4.150 20 C -0.153 4.153 21 C -0.150 4.150 22 C -0.034 4.034 23 H 0.117 0.883 24 Cl -0.174 7.174 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.145 0.855 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.824 -10.528 4.567 17.210 hybrid contribution -0.545 0.920 -0.015 1.070 sum 12.279 -9.608 4.552 16.242 Atomic orbital electron populations 1.69733 1.09048 1.31063 1.38655 1.26806 0.95421 1.04013 0.90870 0.85503 0.79500 0.76648 0.79368 1.18004 1.20973 1.17767 1.19165 0.93423 0.94975 1.41409 0.93214 1.17390 0.92741 0.92360 0.93267 1.20663 0.96998 1.02876 1.04357 1.20662 0.92977 0.99302 1.00414 1.20722 0.99807 0.97584 1.03027 1.21114 0.93322 1.02113 1.02609 1.19208 0.92402 0.93601 0.96282 1.86044 1.36169 1.42175 1.58877 1.22714 0.92526 0.90528 0.92166 0.90674 1.22116 1.01179 0.95968 0.98543 1.21559 0.97677 0.98516 0.97290 1.21612 1.02527 0.96652 0.94476 1.21917 0.98077 0.95200 0.99761 1.24399 1.02634 0.88001 0.88406 0.88336 1.98730 1.97117 1.54554 1.67013 0.89889 0.88310 0.85473 0.84653 0.84837 0.91617 0.91344 0.90725 0.89417 0.88195 0.91209 0.89994 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.96 13.93 21.83 0.30 -49.65 16 2 C 0.04 2.37 5.44 85.25 0.46 2.83 16 3 Si 0.97 45.51 24.40 68.60 1.67 47.19 16 4 H -0.25 -11.12 6.72 99.48 0.67 -10.45 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.25 -12.24 6.65 99.48 0.66 -11.57 16 7 C -0.46 -27.54 9.23 23.40 0.22 -27.33 16 8 H 0.05 3.28 7.87 -2.91 -0.02 3.26 16 9 C 0.05 2.43 5.19 -21.20 -0.11 2.32 16 10 C -0.23 -11.19 6.98 22.47 0.16 -11.04 16 11 C -0.12 -4.74 9.97 22.00 0.22 -4.52 16 12 C -0.19 -7.22 10.04 22.43 0.23 -7.00 16 13 C -0.17 -6.82 8.24 22.34 0.18 -6.64 16 14 C 0.03 1.42 6.63 23.08 0.15 1.57 16 15 O -0.32 -14.31 8.83 -89.59 -0.79 -15.10 16 16 C 0.08 2.47 1.62 30.59 0.05 2.52 16 17 H 0.08 2.35 6.33 -2.39 -0.02 2.34 16 18 C -0.14 -3.60 5.18 30.59 0.16 -3.44 16 19 C -0.11 -1.87 5.92 30.59 0.18 -1.69 16 20 C -0.12 -1.63 5.92 30.59 0.18 -1.45 16 21 C -0.11 -2.05 5.33 30.59 0.16 -1.88 16 22 C 0.01 0.26 2.93 30.59 0.09 0.35 16 23 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 24 Cl -0.20 -6.89 28.33 -2.72 -0.08 -6.96 16 25 H 0.29 15.26 8.30 -92.71 -0.77 14.49 16 26 H 0.10 4.81 4.31 -2.91 -0.01 4.80 16 27 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 28 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 29 H 0.13 4.33 5.43 -2.91 -0.02 4.32 16 30 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.07 1.90 6.90 -2.39 -0.02 1.88 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -67.28 304.98 4.42 -62.85 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.98 Total: 17.06 kcal Atomic # 6 Polarization: -57.72 SS G_CDS: 2.33 Total: -55.39 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.30 Total: -49.65 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.79 Total: -15.10 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.67 Total: 47.19 kcal Atomic # 17 Polarization: -6.89 SS G_CDS: -0.08 Total: -6.96 kcal Total: -67.28 4.42 -62.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276129.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.091 kcal (2) G-P(sol) polarization free energy of solvation -67.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds